| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 127847 | 160 (0.790) | 8 (0.050) | 4/138 | NT | 5.5% | intergenic (+67/+262) | lctP_1/spa | L‑lactate permease/Immunoglobulin G‑binding protein A |
| ? | USA300TCH1516_ALE | = 127871 | 138 (0.790) | intergenic (+91/+238) | lctP_1/spa | L‑lactate permease/Immunoglobulin G‑binding protein A | |||||
Only 100 of 251 total aligned reads displayed.
ATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAG > USA300TCH1516_ALE/127781‑127961 | aaacgcctcaacactttctactctgattacatatatgacattttaaagcaataaaaAATCGAACTAGTACGAAATGCAATGAGCATCTTGt > 2:1617329‑M1/57‑91 (MQ=255) tataAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTc > 2:939533‑M2/1‑90 (MQ=255) aacgcctcaacactttctactctgattacatatatgacatttttaggcattaaaaAATCGAACTAGTACGAAATGCAATGAGCATCTTGTc > 2:1069369‑M1/56‑91 (MQ=255) ataaataaTGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTct > 1:2150858‑M2/1‑89 (MQ=255) ataaataaTGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTct < 2:2076069‑M2/91‑3 (MQ=255) gcctcaacactttctactctgattacatatatgacatttttaggcattaaaaAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAg > 1:2507273‑M1/53‑91 (MQ=255) cctcaacactttctactctgattacatatatgacatttttaggcattaaaaAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGt > 2:3633480‑M1/52‑91 (MQ=255) aataatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCGTGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagt > 2:2583102‑M2/1‑86 (MQ=255) aataatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagt > 2:851969‑M2/1‑86 (MQ=255) aataatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagt > 1:294408‑M2/1‑86 (MQ=255) aataatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagt > 2:1341708‑M2/1‑86 (MQ=255) ataatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagtt > 2:3751653‑M2/1‑85 (MQ=255) taatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagttc < 1:1195962‑M2/91‑8 (MQ=255) aatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGACTCGAACTAGTACGAAATGCAATGAGCATCTTGTctagttcg < 2:1296814‑M2/91‑9 (MQ=255) aatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagttcg < 2:371783‑M2/91‑9 (MQ=255) atGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagttcga > 2:1325602‑M2/1‑82 (MQ=255) aacactttctactctgattacatatatgacatttttaggcattaaaaAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGa > 1:3114909‑M1/48‑91 (MQ=255) gttgtCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagttcgatt > 1:3524073‑M2/1‑80 (MQ=255) tCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGAtttttt > 1:3513340/1‑91 (MQ=255) tCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGAtctttt > 1:3296780/1‑91 (MQ=255) cACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTa > 2:3265903/1‑91 (MQ=255) aCTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTaa < 1:283226/91‑1 (MQ=255) cTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAAt < 1:818718/91‑1 (MQ=255) tGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGc < 2:1791903/91‑1 (MQ=255) tGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGc < 1:1640904/91‑1 (MQ=255) gATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCt < 1:2070785/91‑1 (MQ=255) aTTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTa < 1:21358/91‑1 (MQ=255) aTTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTa < 2:369238/91‑1 (MQ=255) ttCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTaa > 1:1448000/1‑91 (MQ=255) ttCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTaa < 2:2008814/91‑1 (MQ=255) cAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTaaaa > 2:2164664/1‑91 (MQ=255) aaTGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAAt > 2:3870499/1‑91 (MQ=255) gACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTc < 2:3409173/91‑1 (MQ=255) aCATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCa < 1:1191946/91‑1 (MQ=255) aTTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCata > 2:1107592/1‑91 (MQ=255) ttAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCatatat < 2:720201/91‑1 (MQ=255) ttAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCatatat < 1:3847088/91‑1 (MQ=255) ttAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGACTAAAAATGTCatatat > 1:3458200/1‑91 (MQ=255) aaaTCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGt > 1:940007/1‑91 (MQ=255) aaTCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTa > 2:3341998/1‑91 (MQ=255) aaTCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTa > 1:84970/1‑91 (MQ=255) cTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATc < 2:587843/91‑1 (MQ=255) tAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCa > 1:1597586/1‑91 (MQ=255) ttattCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCagag < 2:3825708/91‑1 (MQ=255) tattCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGt < 1:2003259/91‑1 (MQ=255) tattCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGt < 2:1211683/91‑1 (MQ=255) cATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGaa > 1:35837/1‑91 (MQ=255) aTGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGaaa > 2:3593624/1‑91 (MQ=255) aTGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGaaa < 1:2370653/91‑1 (MQ=255) tGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAg < 1:2728751/91‑1 (MQ=255) gAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAgt > 2:2179026/1‑91 (MQ=255) gAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAgt > 1:1205049/1‑91 (MQ=255) gAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAgt > 2:1940529/1‑91 (MQ=255) TCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGtt > 2:2941939‑M1/1‑91 (MQ=255) TCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGtt < 2:905419‑M1/91‑1 (MQ=255) TCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGtt > 2:1654756‑M1/1‑91 (MQ=255) GAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGa > 2:347985‑M1/1‑91 (MQ=255) AACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAg < 2:769298‑M1/91‑1 (MQ=255) AACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAg < 2:1733317‑M1/91‑1 (MQ=255) AACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAg > 2:1848690‑M1/1‑91 (MQ=255) aCTAGTACGAAATGCAATGAGCATCTTGTctagttcgattcatgaataattagatttaaaatgtcatttgaatccaagtgacaacattatt < 2:2704927‑M2/91‑63 (MQ=255) aCTAGTACGAAATGCAATGAGCATCTTGTctagttcgattcatgaataattagatttaaaatgtcatttgaatccaagtgacaacattatt < 2:502386‑M2/91‑63 (MQ=255) aCTAGTACGAAATGCAATGAGCATCTTGTctagttcgattcatgaataattagatttaaaatgtcatttgaatccaagtgacaacattatt < 2:3788673‑M2/91‑63 (MQ=255) ACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAgg < 2:3818110‑M1/91‑1 (MQ=255) ACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAgg < 1:480504‑M1/91‑1 (MQ=255) ACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAgg < 2:1466089‑M1/91‑1 (MQ=255) ACTAGTACGAAATGCAATGAGCATCTAGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAgg < 2:2245239‑M1/91‑1 (MQ=255) CTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGc > 1:33150‑M1/1‑91 (MQ=255) TAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCg < 1:17431‑M1/91‑1 (MQ=255) AGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGt < 1:2259573‑M1/91‑1 (MQ=255) AGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGt < 1:121954‑M1/91‑1 (MQ=255) aCGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTc > 2:2750716/1‑91 (MQ=255) aCGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTc < 2:1133423/91‑1 (MQ=255) cGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCa < 1:2824307/91‑1 (MQ=255) gAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAg > 1:731559/1‑91 (MQ=255) gAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAg > 1:1986948/1‑91 (MQ=255) gAAATGCAAAGAGCATCTTGTCTAGTTCGCTTTTCTAATGTCCTTAGATGTCATATATGTGATCAGAGTAGAATGTGTTGCGGCGttgcgg > 2:1168483/1‑87 (MQ=255) aaTGCAATGGGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGaa < 1:3790329/91‑1 (MQ=255) aTGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAg < 1:3217187/91‑1 (MQ=255) tGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgt > 2:3154590/1‑91 (MQ=255) tGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgt < 1:605072/91‑1 (MQ=255) tGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgt < 1:3381467/91‑1 (MQ=255) cAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttg < 1:3100612/91‑1 (MQ=255) cAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttg > 1:1825881/1‑91 (MQ=255) cAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttg > 1:2661346/1‑91 (MQ=255) aaTGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttgt < 1:3644977/91‑1 (MQ=255) aTGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttgtt > 1:1055646/1‑91 (MQ=255) aTGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttgtt > 1:1039798/1‑91 (MQ=255) aTGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttgtt < 1:2452492/91‑1 (MQ=255) aTGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttgtt < 2:3753901/91‑1 (MQ=255) aTCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGaaa > 1:3220722/1‑91 (MQ=255) tCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTGATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGaaaa < 2:3118816/91‑1 (MQ=255) tCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGaaaa < 1:1697643/91‑1 (MQ=255) tCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGaaaa > 2:2914354/1‑91 (MQ=255) cTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAaag < 1:54123/91‑1 (MQ=255) ttGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAaagt < 1:158214/91‑1 (MQ=255) tGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAaagta > 2:2341988/1‑91 (MQ=255) gTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAaagtaa > 1:2525938/1‑91 (MQ=255) gTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAaagtaa > 1:1331720/1‑91 (MQ=255) tCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAaagtaag > 1:2598326/1‑91 (MQ=255) | ATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAG > USA300TCH1516_ALE/127781‑127961 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |