| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 145649 = | 193 (0.950) | 13 (0.070) | 6/140 | NT | 7.2% | intergenic (+74/‑122) | noc_1/USA300HOU_RS00655 | Nucleoid occlusion protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 145689 = | 168 (0.940) | intergenic (+114/‑82) | noc_1/USA300HOU_RS00655 | Nucleoid occlusion protein/hypothetical protein | |||||
Only 100 of 265 total aligned reads displayed.
ACTTGGTGGAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAA > USA300TCH1516_ALE/145559‑145739 | gagctcatactcattccccatttatttaaaatttatactttaccttaatataccttattttatttaatttttatatgcaaaatacaaaaat > 1:674692‑M1/91‑91 (MQ=255) agctcatactcattccccatttatttaaaatttatactttaccttaatataccttattttatttaatttttatatgcaaaatacaaaaaTg < 1:1025568‑M1/2‑1 (MQ=255) agctcatactcattccccatttatttaaaatttatactttaccttaatataccttattttatttaatttttatatacaaaatacaaaaaTg > 2:1950713‑M1/90‑91 (MQ=255) ttGGTGGAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTgg < 1:2262513/91‑1 (MQ=255) ttGATGGAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTgg < 1:3187883/91‑1 (MQ=255) gctcatactcattccccatttatttaaaatttatactttaccttaatataccttattttatttaatttttatatgcaaaatacaaaaaTgg < 2:2946062‑M1/3‑1 (MQ=255) gctcatactcattccccatttatttaaaatttatactttaccttaatataccttattttatttaatttttatatgcaaaatacaaaaaTgg < 2:429612‑M1/3‑1 (MQ=255) caacatactcattccccatttatttaaaatttatactttaccttaatataccttattttatttaatttttatatgcaaaatacaaaaaTgg > 2:1047853‑M1/89‑91 (MQ=255) atggtggAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTgg < 2:3938915/90‑1 (MQ=255) tcatactcattccccatttatttaaaatttatactttaccttaatataccttattttatttaatttttatatgcaaaatacaaaaaTGgag > 2:2173658‑M1/87‑91 (MQ=255) catactcattccccatttatttaaaatttatactttaccttaatataccttattttatttaatttttatatgcaaaatacaaaaaTGgaga < 2:509983‑M1/6‑1 (MQ=255) tggAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGaa > 2:20816/1‑91 (MQ=255) atacttattccccatttatttaaaatttatactttaccttaatataccttattttatttaatttttatatgcaaaatacaaaaaTGGAGaa > 2:3645776‑M1/85‑91 (MQ=255) atactcattccccatttatttaaaatttatactttaccttaatataccttattttatttaatttttatatgcaaaatacaaaaaTGGAGaa > 2:3134585‑M1/85‑91 (MQ=255) atactcattccccatttatttaaaatttatactttaccttaatataccttattttatttaatttttatatgcaaaatacaaaaaTGGAGaa > 1:2052481‑M1/85‑91 (MQ=255) gAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACt < 2:3325967/91‑1 (MQ=255) actcattccccatttatttaaaatttatactttaccttaatataccttattttatttaatttttatatgcaaaatacaaaaaTGGAGAACt > 2:183180‑M1/83‑91 (MQ=255) ctcattccccatttatttaaaatttatactttaccttaatataccttattttatttaatttttatatgcaaaatacaaaaaTGGAGAACtt < 1:648181‑M1/10‑1 (MQ=255) aGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCAAAAATATAATAAAACAATATAGTGTGGAGAACtt < 2:2297313/91‑1 (MQ=255) cAATAGTTTTACAGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACtttt < 2:3280099/91‑1 (MQ=255) aTAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGa > 1:88786/1‑91 (MQ=255) aTAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGa > 1:2651207/1‑91 (MQ=255) tAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGat > 1:2603929/1‑91 (MQ=255) aGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGata > 2:719992/1‑91 (MQ=255) tttACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATAttt > 2:3236799/1‑91 (MQ=255) tACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTta > 2:3573320/1‑91 (MQ=255) cTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTtata < 2:308101/91‑1 (MQ=255) tgtgATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATaa < 1:749714/91‑1 (MQ=255) gATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAata > 1:714398/1‑91 (MQ=255) gATGTTGAGGGAAATATGATGATCTAGCGTATTGATAGCGAAATTATAATTAAACAATATAGTGTGGAGAACTTTTGATATTTaataaata < 2:3680812/91‑1 (MQ=255) aatttatactttaccttaatataccttattttatttaatttttatatgcaaaatacaaaaaTGGAGAACTTTTGATATTTTATAAATATTg > 1:3227413‑M1/62‑91 (MQ=255) ttGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATCGa > 1:3035526/1‑91 (MQ=255) tttatactttaccttaatataccttattttatttaatttttatatgcaaaatacaaaaaTGGAGAACTTTTGATATTTTATAAATATTGaa > 1:2456848‑M1/60‑91 (MQ=255) tttatactttaccttaatataccttattttatttaatttttatatgcaaaatacaaaaaTGGAGAACTTTTGATATTTTATAAATATTGaa > 2:1236732‑M1/60‑91 (MQ=255) tatactttaccttaatataccttattttatttactttttatatgcaaaatacaaaaaTGGAGAACTTTTGATATTTTATAAATATTGAAGt > 1:3503912‑M1/58‑91 (MQ=255) gggAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGtt > 2:1677388/1‑91 (MQ=255) gggAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGtt > 1:1831228/1‑91 (MQ=255) gggaaTATGATGATTGGGCGTAGTGATAGCGAAAATATAATAAAGCAATATAGTGTGGAGAACTTTTGATATGTTATAAATATTGAAGTtc < 2:244907/88‑1 (MQ=255) ggAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTtc < 1:3723083/91‑1 (MQ=255) ggAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTtc < 1:1194451/91‑1 (MQ=255) ggAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTtc < 2:2614753/91‑1 (MQ=255) ggAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTtc < 1:198585/91‑1 (MQ=255) actttaccttaatataccttattttatttaatttttatatgcaaaatacaaaaaTGGAGAACTTTTGATATTTTATAAATATTGAAGTtct > 1:3268705‑M1/55‑91 (MQ=255) aaTATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTcc < 1:3868956/91‑1 (MQ=255) aaTATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTcc < 1:819148/91‑1 (MQ=255) atatGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCa < 1:3122829/91‑1 (MQ=255) atgatgATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAtt > 2:3803177/1‑91 (MQ=255) tgatgaTTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAttt > 2:2394403/1‑91 (MQ=255) gatgatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAtttt > 2:3652664/1‑91 (MQ=255) atgatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAttttt > 2:3731503/1‑91 (MQ=255) atgatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAttttt > 2:83466/1‑91 (MQ=255) atTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTa > 1:1592267/1‑91 (MQ=255) tttAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTAt > 2:3447041/1‑91 (MQ=255) tttAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTAt > 2:3447395/1‑91 (MQ=255) tttAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTAt > 1:2589322/1‑91 (MQ=255) gTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCa < 1:2304212/91‑1 (MQ=255) aTTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCata < 2:1002865/91‑1 (MQ=255) ttGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCatat > 1:2143044/1‑91 (MQ=255) ttGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCatat > 2:1638594/1‑91 (MQ=255) tGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCAtata < 2:2335270/91‑1 (MQ=255) aTAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTTTTTTTTTTATaaa > 2:1470080/1‑91 (MQ=255) tAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATaaaa > 1:1413941/1‑91 (MQ=255) aGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATaaaaa < 1:1720605/91‑1 (MQ=255) cGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAAtt > 1:1248711/1‑91 (MQ=255) aaaaTATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaa > 1:1113812/1‑91 (MQ=255) aaaaTATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaa > 1:477490/1‑91 (MQ=255) aaTATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaaat > 1:2195439/1‑91 (MQ=255) aaTATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaaat > 2:1740995/1‑91 (MQ=255) atatAATAAAACAATATAGTGTGGAGAACTTTTGGTATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaaata < 2:2555510/91‑1 (MQ=255) atatAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTTTTTTTTATATAAAAATtaaata > 2:3644899/1‑91 (MQ=255) atatAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaaata > 1:2086281/1‑91 (MQ=255) ataataAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaaataaa > 1:1163252/1‑91 (MQ=255) aataaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTaaataaaat > 2:969468/1‑91 (MQ=255) aataaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTaaataaaat > 1:2203461/1‑91 (MQ=255) aataaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTaaataaaat > 1:2700649/1‑91 (MQ=255) aataaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTACTTTGCATATAAAAATTaaataaaat > 1:3687066/1‑91 (MQ=255) ataaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTaaataaaata < 1:348358/91‑1 (MQ=255) taaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAaataaaataa > 1:1487662/1‑91 (MQ=255) aaaaCAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTTTTTTTTTTTTATAAAAATTAAATAAAATAAg > 2:2858172/1‑91 (MQ=255) aaaaCAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAg < 2:2913240/91‑1 (MQ=255) aaaaCAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAg < 1:3633373/91‑1 (MQ=255) aaaCAATATAGTGTTGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAgg < 2:211388/91‑1 (MQ=255) aCAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGta < 1:2318378/91‑1 (MQ=255) atatAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTTCATATAAAAATTAAATAAAATAAGGTatat > 2:130175/1‑91 (MQ=255) atatAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTatat < 2:1684937/91‑1 (MQ=255) atatAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTatat < 2:1398213/91‑1 (MQ=255) atatAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTatat > 2:1142495/1‑91 (MQ=255) atatAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTatat > 1:2533963/1‑91 (MQ=255) tataGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATAtt < 2:111524/91‑1 (MQ=255) tataGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATAtt > 1:3312512/1‑91 (MQ=255) ataGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTa > 1:271231/1‑91 (MQ=255) ataGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTa > 2:1007364/1‑91 (MQ=255) ataGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTa > 1:3935608/1‑91 (MQ=255) taGTGTGGAGAACTTTTGATATTTTATAAATATTGAAATTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTaa > 1:3342723/1‑91 (MQ=255) gtgtGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAgg > 1:2856429/1‑91 (MQ=255) gtgtGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAgg > 1:1870083/1‑91 (MQ=255) gtgtGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAgg > 2:2727585/1‑91 (MQ=255) tgtgGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGt < 2:1102819/91‑1 (MQ=255) tgtgGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGt < 1:2073180/91‑1 (MQ=255) TGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTaa < 1:1531851‑M1/91‑1 (MQ=255) | ACTTGGTGGAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAA > USA300TCH1516_ALE/145559‑145739 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |