BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	145649 =	193 (0.950)	13 (0.070)	6/140	NT	7.2%	intergenic (+74/‑122)	noc_1/USA300HOU_RS00655	Nucleoid occlusion protein/hypothetical protein
*	?	USA300TCH1516_ALE	145689 =	168 (0.940)	13 (0.070)	6/140	NT	7.2%	intergenic (+114/‑82)	noc_1/USA300HOU_RS00655	Nucleoid occlusion protein/hypothetical protein

Only 100 of 270 total aligned reads displayed.

TATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAATGAGTATGAGCTCA  >  USA300TCH1516_ALE/145599‑145779

 atgatgATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAtt                                                                                           >  2:2276091/1‑91 (MQ=255)

  tgatgaTTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAttt                                                                                          >  2:1815226/1‑91 (MQ=255)

  tgatgaTTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAttt                                                                                          <  1:1313764/91‑1 (MQ=255)

  tgatgaTTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAttt                                                                                          >  2:3745405/1‑91 (MQ=255)

   gatgatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAtttt                                                                                         <  2:294465/91‑1 (MQ=255)

   gatgatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAtttt                                                                                         >  2:3652664/1‑91 (MQ=255)

   gatgatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACGTTTGATATTTTATAAATATTGAAGTTCTCCAtttt                                                                                         <  1:3645497/91‑1 (MQ=255)

    atgatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAttttt                                                                                        >  2:83466/1‑91 (MQ=255)

    atgatTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCAttttt                                                                                        >  1:2055415/1‑91 (MQ=255)

        tttAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTAt                                                                                    >  2:3447339/1‑91 (MQ=255)

          tAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATtttttttttt                                                                                  >  2:2615426/1‑91 (MQ=255)

              gTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCa                                                                              <  1:2304212/91‑1 (MQ=255)

              gTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCa                                                                              >  1:900811/1‑91 (MQ=255)

                aTTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCata                                                                            <  1:733599/91‑1 (MQ=255)

                aTTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCata                                                                            <  2:1002865/91‑1 (MQ=255)

                 ttGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCatat                                                                           >  1:2143044/1‑91 (MQ=255)

                    aTAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTTTTTTTTTTATaaa                                                                        >  2:1470080/1‑91 (MQ=255)

                       gCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAAt                                                                     <  1:2702001/91‑1 (MQ=255)

                           aaaTATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaaa                                                                 <  1:3043303/91‑1 (MQ=255)

                            aaTATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaaat                                                                >  2:1740995/1‑91 (MQ=255)

                            aaTATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaaat                                                                <  1:2006000/91‑1 (MQ=255)

                            aaTATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaaat                                                                >  1:2195439/1‑91 (MQ=255)

                             atatAATAAAACAATATAGTGTGGAGAACTTTTGGTATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaaata                                                               <  2:2555510/91‑1 (MQ=255)

                             atatAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaaata                                                               <  2:3322138/91‑1 (MQ=255)

                             atatAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaaata                                                               >  1:2086281/1‑91 (MQ=255)

                             atatAATAAAACAATATAGTGTGGAGAACTTGTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaaata                                                               <  2:1032026/91‑1 (MQ=255)

                              tataATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaaataa                                                              <  2:363618/91‑1 (MQ=255)

                               ataataAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATtaaataaa                                                             >  1:1163252/1‑91 (MQ=255)

                                 aataaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTaaataaaat                                                           >  2:2339321/1‑91 (MQ=255)

                                 aataaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTACTTTGCATATAAAAATTaaataaaat                                                           >  1:3687066/1‑91 (MQ=255)

                                  atgaaaCAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCAGATAAAAATTaaataaaata                                                          <  2:1182120/88‑1 (MQ=255)

                                  ataaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTaaataaaata                                                          <  1:348358/91‑1 (MQ=255)

                                   taaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTTTTTTTTTTTTATAAAAATTAaataaaataa                                                         >  2:3894958/1‑91 (MQ=255)

                                   taaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAaataaaataa                                                         >  1:1487415/1‑91 (MQ=255)

                                   taaAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAaataaaataa                                                         >  1:1676284/1‑91 (MQ=255)

                                    aaaaCAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTTTTTTTTTTTTATAAAAATTAAATAAAATAAg                                                        >  2:2858172/1‑91 (MQ=255)

                                    aaaaCAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAg                                                        <  2:2913240/91‑1 (MQ=255)

                                     aaaCAATATAGTGTTGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAgg                                                       <  2:211388/91‑1 (MQ=255)

                                     aaaCAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAgg                                                       <  1:3249042/91‑1 (MQ=255)

                                     aaaCAATATAGCGTGGAGAACTTGTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAgg                                                       <  2:3023637/91‑1 (MQ=255)

                                        cAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGtat                                                    >  1:3278218/1‑91 (MQ=255)

                                          atatAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTatat                                                  <  2:1398213/91‑1 (MQ=255)

                                          atatAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTatat                                                  >  2:130184/1‑91 (MQ=255)

                                          atatAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTatat                                                  >  1:2533963/1‑91 (MQ=255)

                                          atatAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTatat                                                  <  1:1572499/91‑1 (MQ=255)

                                          atatAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTatat                                                  >  2:1142495/1‑91 (MQ=255)

                                           tataGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATAtt                                                 <  2:111524/91‑1 (MQ=255)

                                            ataGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTa                                                >  2:2074981/1‑91 (MQ=255)

                                            ataGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTa                                                <  2:1241901/91‑1 (MQ=255)

                                            ataGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTa                                                >  1:271231/1‑91 (MQ=255)

                                             taGTGTGGAGAACTTTTGATATTTTATAAATATTGAAATTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTaa                                               >  1:3342723/1‑91 (MQ=255)

                                               gtgtGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAgg                                             >  1:1815914/1‑91 (MQ=255)

                                               gtgtGGAGAACTTCTGATATTTTATAAATATTGAAGTTCTCCATTCTTGTATTTTGCATATAAAAATTAAATAAAATCAGGTATATTAAgg                                             >  2:1680830/1‑91 (MQ=255)

                                                tgtgGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGt                                            <  2:1102797/91‑1 (MQ=255)

                                                  TGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTaa                                          <  1:1531838‑M1/91‑1 (MQ=255)

                                                   ggagaacttcaatatttataaaatatcaaaagttctccaTTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTGAGGTaaa                                         >  1:195988‑M2/40‑91 (MQ=255)

                                                      GAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGta                                      >  1:352926‑M1/1‑91 (MQ=255)

                                                        ACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGtata                                    >  1:2450708‑M1/1‑91 (MQ=255)

                                                        ACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGtata                                    <  2:2325220‑M1/91‑1 (MQ=255)

                                                        ACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTAAAAAAAAAAAAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGtata                                    >  2:1764522‑M1/1‑91 (MQ=255)

                                                           TTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAAt                                 >  2:3237707‑M1/1‑91 (MQ=255)

                                                           TTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAAt                                 <  2:3863507‑M1/91‑1 (MQ=255)

                                                            caatatttataaaatatcaaaagttctccaTTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAAtt                                >  1:3227244‑M2/31‑91 (MQ=255)

                                                             tGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTGAATAAAATAAGGTATATTAAGGTAAAGTATAAAtta                               >  2:3919148/1‑90 (MQ=255)

                                                             tGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAAttt                               >  2:3398492/1‑91 (MQ=255)

                                                             tGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAAttt                               >  1:2815220/1‑91 (MQ=255)

                                                              gATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAAttta                              <  2:163945/91‑2 (MQ=255)

                                                                    ttATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTtaaataa                        >  1:141088/1‑91 (MQ=255)

                                                                     tataAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTtaaataaa                       >  2:2262399/1‑91 (MQ=255)

                                                                     tataAATATTGAAGATCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTtaaataaa                       >  2:1498911/1‑91 (MQ=255)

                                                                      ataAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTACATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTaaataaat                      >  1:3137982/1‑91 (MQ=255)

                                                                      ataAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTaaataaat                      <  2:1971739/91‑1 (MQ=255)

                                                                      ataAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTaaataaat                      <  2:657372/91‑1 (MQ=255)

                                                                      ataAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTaaataaat                      >  2:2466548/1‑91 (MQ=255)

                                                                      ataAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTaaataaat                      <  2:1972261/91‑1 (MQ=255)

                                                                        aaaTATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATgg                    <  1:617629/91‑1 (MQ=255)

                                                                        aaaTATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATgg                    <  2:3089801/91‑1 (MQ=255)

                                                                         aaTATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATggg                   <  2:1557880/91‑1 (MQ=255)

                                                                         aaTATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATggg                   <  1:3434892/91‑1 (MQ=255)

                                                                         aaTATTGAAGTTCTCCATTTTTGTATCTTGCATATAAAAACTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATggg                   >  2:1850319/1‑91 (MQ=255)

                                                                          atatTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATgggg                  <  1:2331388/91‑1 (MQ=255)

                                                                          atatTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATgggg                  <  1:1018845/91‑1 (MQ=255)

                                                                           tatTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGa                 >  1:2203482/1‑91 (MQ=255)

                                                                           tatTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGa                 >  1:2894629/1‑91 (MQ=255)

                                                                             ttGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAAt               <  2:2758186/91‑1 (MQ=255)

                                                                             ttGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAAt               <  2:1887740/91‑1 (MQ=255)

                                                                               gAAGTTCTCCATTTTTGTATTTTGGATATAAAAATTAAATAAAATAAGGTATATGAAGGTAAAGTATAAATTTTAAATAAATGGGGCATGa             >  2:516538/1‑91 (MQ=38)

                                                                               gAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAATGa             >  1:648481/1‑91 (MQ=255)

                                                                                  gttctccaTTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAATGAGTa          <  1:1029841‑M2/83‑1 (MQ=255)

                                                                                   ttctccaTTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAATGAGTAt         >  1:2566064‑M2/8‑91 (MQ=255)

                                                                                   ttctccaTTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAATGAGTAt         >  2:3134585‑M2/8‑91 (MQ=255)

                                                                                   ttctccaTTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAATAAGTAt         >  2:3645776‑M2/8‑91 (MQ=255)

                                                                                    tctccaTTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAATGAGTATg        >  2:3661456‑M2/7‑91 (MQ=255)

                                                                                    tctccaTTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAATGAGTATg        <  2:509983‑M2/85‑1 (MQ=255)

                                                                                    tctccaTTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAATGAGTATg        <  1:2655724‑M2/85‑1 (MQ=255)

                                                                                     ctccaTTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAATGAGTATGa       >  2:2173658‑M2/6‑91 (MQ=255)

                                                                                       ccaTTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAATGAGTATGAGc     <  1:3850752‑M2/88‑1 (MQ=255)

                                                                                       ccaTTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAATGAGTATGAGc     <  2:429612‑M2/88‑1 (MQ=255)

                                                                                        caTTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAATGAGTATGAGCt    <  2:3587565‑M2/89‑1 (MQ=255)

                                                                                         aTTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAATGAGTATGAGCTc   >  1:674692‑M2/2‑91 (MQ=255)

TATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTTTGATATTTTATAAATATTGAAGTTCTCCATTTTTGTATTTTGCATATAAAAATTAAATAAAATAAGGTATATTAAGGTAAAGTATAAATTTTAAATAAATGGGGAATGAGTATGAGCTCA  >  USA300TCH1516_ALE/145599‑145779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.