| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 549463 = | 215 (1.060) | 21 (0.130) | 10/130 | NT | 12.1% | intergenic (+13/‑216) | ftsH/hslO | ATP‑dependent zinc metalloprotease FtsH/33 kDa chaperonin |
| ? | USA300TCH1516_ALE | 549502 = | 130 (0.790) | intergenic (+52/‑177) | ftsH/hslO | ATP‑dependent zinc metalloprotease FtsH/33 kDa chaperonin | |||||
Only 100 of 281 total aligned reads displayed.
GAAAAAGATGAACCAGCACATCAACAAGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTAT > USA300TCH1516_ALE/549373‑549551 | gaAAAAGATGAACCAGCACATCAACAAGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCa > 1:940207/1‑91 (MQ=255) taaataatgaagtaacttgttttacaattattttctgctataacaattcaacgacttaaaatctaatacgtattttcaaacacgataaaAg < 2:1484944‑M1/2‑1 (MQ=255) aaaaaGATGAAGCAGCACATCAGCAAGCCCCAAATATCGAAAAACCTTATGATCCAAATTACCCAGACAATAAATAATCGATTATATTCAg < 2:3011356/91‑1 (MQ=255) aaaaaGATGAACCAGCACATCAACAAGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAg < 1:472690/91‑1 (MQ=255) ataatgaagtaacttgttttacaattattttctgctataacaattcaacgacttaaaatctaatacgtattttcaaaaacgataaaAGTAc < 2:3552937‑M1/5‑1 (MQ=255) aaGATGAACCAGCACATCAACAAGCCCCAAATATCGAAATACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTAc < 2:2600252/91‑1 (MQ=255) aaGATGAACCAGCACATCAACAAGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTAc < 1:288888/91‑1 (MQ=255) taatgaagtaacttgttttacaattattttctgctataacaattcaacgacttaaaatctaatacgtattttcaaaaacgataaaAGTAcc < 2:3351321‑M1/6‑1 (MQ=255) taatgaagtaacttgttttacaattattttctgctataacaattcaacgacttaaaatctaatacgtattttcaaaaacgataaaAGTAcc > 1:2341802‑M1/86‑91 (MQ=255) aGATGAACCAGCACATCAACAAGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTAcc > 1:3552937/1‑91 (MQ=255) aatgaagtaacttgttttacaattattttctgctataacaattcaacgacttaaaatctaatacgtattttcaaaaacgataaaAGTACct > 1:862139‑M1/85‑91 (MQ=255) aatgaagtaacttgttttacaattattttctgctataacaattcaacgacttaaaatctaatacgtatattcaaaaacgataaaAGTACct > 2:1977915‑M1/85‑91 (MQ=255) aTGAACCAGCACCTCAACAAGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACctc > 1:3051832/1‑91 (MQ=255) tGAACCAGCACATCAACAAGCCCAAAAAAACGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACctct < 2:2951180/91‑1 (MQ=255) gaagtaacttgttttacaattattttctgctataacaattcaacgacttaaaatctaatacgtattttcaaaaacgataaaAGTACCTCtt > 1:428805‑M1/82‑91 (MQ=255) agtaacttgttttacaattattttctgctataacaattcaacgacttaaaatctaatacgtattttcaaaaacgataatAGTACCTCTTTc > 1:3047985‑M1/80‑91 (MQ=255) agtaacttgttttacaattattttctgctataacaattcaacgacttaaaatctaatacgtattttcaaaaacgataaaAGTACCTCTTTc < 2:3232120‑M1/12‑1 (MQ=255) agtaacttgttttacaattattttctgctataacaattcaacgacttaaaatctaatacgtattttcaaaaacgataaaAGTACCTCTTTc < 1:2768138‑M1/12‑1 (MQ=255) aCCAGCACATCAACAAGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTc < 2:128763/91‑1 (MQ=255) aCCAGCACATCAACAAGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTc > 1:1053591/1‑91 (MQ=255) gtaacttgttttacaattattttctgctataacaattcaacgacttaaaatctaatacgtattttcaaaaacgataaaAGTACCTCTTTCt > 2:2517428‑M1/79‑91 (MQ=255) taacttgttttacaattattttctgctataacaattcaacgacttaaaatctaatacgtattttcaaaaacgataaaAGTACCTCTTTCTa > 2:1249577‑M1/78‑91 (MQ=255) cAGCACATCAACAAGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTa > 2:3446232/1‑91 (MQ=255) aGCACATCAACAAGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTAt < 1:3648614/91‑1 (MQ=255) gCACATCAACAAGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATg > 1:380262/1‑91 (MQ=255) gCACATCAACAAGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATg > 1:1761299/1‑91 (MQ=255) cacaTCAACAAGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGa > 1:3730539/1‑91 (MQ=255) acaTCAACAAGCCACAAATATCGAAAAACCATACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑t < 2:2825190/91‑1 (MQ=255) tCAACAAGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑Taaa > 2:371939/1‑91 (MQ=255) caacaaGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAg > 1:2413628/1‑91 (MQ=255) caacaaGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAg > 1:899879/1‑91 (MQ=255) aacaaGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGt < 1:1252730/91‑1 (MQ=255) caaGCCCCAAATATCGAAAAACCTTACGATCCAGATCGCCCAGACAGTAAATAATCGATCATATTCAGTACCTCTTTCTATGA‑TAAAGTta > 1:3152827/1‑91 (MQ=255) caaGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTta > 1:2109467/1‑91 (MQ=255) caaGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAACCGATTATATTCAGTACCTCCTTCTATGA‑TAAAGtca > 2:3044396/1‑89 (MQ=255) acaattattttctgctataacaattcaacgacttaaaatctaatacgtattttcaaaaacgataaaAGTACCTCTTTCTATGA‑TAAAGTta > 2:1067398‑M1/67‑91 (MQ=255) caattattttctgctataacaattcatcgacttaaaatctaatacgtattttcaaaaacgataaaAGTACCTCTTTCTATGA‑TAAAGTtat > 2:3741015‑M1/66‑91 (MQ=255) aattattttctgctataacaattcaacgacttaaaatctaatacgtattttcaaaaacgataaaAGTACCTCTTTCTATGA‑TAAAGTtata > 2:359769‑M1/65‑91 (MQ=255) ccccAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGa < 1:1197164/91‑1 (MQ=255) ccccAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGa > 2:544374/1‑91 (MQ=255) ccAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGaaa < 1:2574467/91‑1 (MQ=255) attttctgctataacaattcaacgacttaaaatctaatacgtattttcaaaaacgataaaAGTACCTCTTTCTATGA‑TAAAGTTATAGaaa > 1:3309150‑M1/61‑91 (MQ=255) attttctgctataacaattcaacgacttaaaatctaatacgtattttcaaaaacgataaaAGTACCTCTTTCTATGA‑TAAAGTTATAGaaa > 1:315684‑M1/61‑91 (MQ=255) tctgctataacaattcaacgacttaaaatctaatacgtattttcaaaaacgataaaAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAgg > 1:2805837‑M1/57‑91 (MQ=255) tcctctataacaagtcaacgacataaaagctaatacgtattttcaaaaacgataaaAGTACCTCTTTCTATGA‑TAAAAATATAGAGAGAgg > 2:411456‑M1/57‑91 (MQ=255) ctCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTa < 2:3929231/90‑1 (MQ=255) tCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTAc < 1:1092097/91‑1 (MQ=255) tCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTAc > 1:3119578/1‑91 (MQ=255) aaaaCCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACtttt < 2:238542/91‑1 (MQ=255) aaaaCCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACtttt < 2:3030590/91‑1 (MQ=255) aaaCCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATTA‑TAAAGTTATGGAAAGAGGTACTTTTa < 1:1177213/91‑1 (MQ=255) aCCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATc < 1:3200861/91‑1 (MQ=255) cTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGt > 2:2775575/1‑91 (MQ=255) ttACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGtt < 1:2667379/91‑1 (MQ=255) tACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGttt > 1:1570840/1‑91 (MQ=255) aCGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGCGGTACTTTTATCGtttt > 2:453370/1‑91 (MQ=255) aCGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGtttt > 2:3000725/1‑91 (MQ=255) aCGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGtttt < 1:1896657/91‑1 (MQ=255) aCGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGtttt > 2:508989/1‑91 (MQ=255) aCGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGtttt < 1:1897719/91‑1 (MQ=255) ccAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGaaa > 1:1234330/1‑91 (MQ=255) ccAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGaaa > 1:2788365/1‑91 (MQ=255) ccAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGaaa < 1:2977295/91‑1 (MQ=255) ccAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGaaa < 1:625326/91‑1 (MQ=255) ccAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGaaa > 1:1868985/1‑91 (MQ=255) cAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGaaaa < 1:2492125/91‑1 (MQ=255) cAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGaaaa < 1:68275/91‑1 (MQ=255) cACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGt < 2:2082103/91‑1 (MQ=255) cACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGt > 2:2155555/1‑91 (MQ=255) cACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGt > 1:1000571/1‑91 (MQ=255) cACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGt < 2:1887312/91‑1 (MQ=255) cACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGt < 1:3083948/91‑1 (MQ=255) cACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGt < 1:3611340/91‑1 (MQ=255) aCCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTa > 1:3895713/1‑91 (MQ=255) aCCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTa < 1:137264/91‑1 (MQ=255) ccAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTAtt < 2:1154297/91‑1 (MQ=255) ccAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTAtt > 2:684318/1‑91 (MQ=255) cAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTa > 2:1539399/1‑91 (MQ=255) taattaataATCGATTATATGGAGTACCTCTTTCTATGA‑TAGAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTGTTAGAtt < 2:1142624/90‑1 (MQ=255) cAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGAtt > 2:3786212/1‑91 (MQ=255) aataaataATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGAttt < 2:2926695/91‑1 (MQ=255) ataaataaTCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGAtttt < 2:2301344/91‑1 (MQ=255) taaataaTCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTa > 2:1639376/1‑91 (MQ=255) aataatCGATTATATTCAGTACCTCTTTCTCTGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTATTGAAAATACGTATTAGATTTTAAg > 2:3142791/1‑91 (MQ=255) ataatCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGt > 2:3066583/1‑91 (MQ=255) taatCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTc > 2:2276500/1‑91 (MQ=255) aatCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCg > 1:2309931/1‑91 (MQ=255) aatCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCg < 2:3321508/91‑1 (MQ=255) aatCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCg < 2:3653758/91‑1 (MQ=255) aatCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCg < 1:2844262/91‑1 (MQ=255) atCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGt < 2:1554602/91‑1 (MQ=255) tCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGtt < 2:3905427/91‑1 (MQ=255) cGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTg < 2:752293/91‑1 (MQ=255) cGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTg < 1:2950484/91‑1 (MQ=255) gATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGa > 1:798692/1‑91 (MQ=255) aaacgataaaAGTACCTCTTTCTATAACTTTA‑TCATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGa < 1:583550‑M1/81‑1 (MQ=255) ttATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTGTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAAt < 2:3051832/91‑1 (MQ=255) atTCAGTACCTCTTTCTCTGA‑TAAAGTTCTAGAAAGCGGTCCTTTTATCGTTTTTGAAAATACGTCTTAGATTCTCAGTCGTTGAATTGtt > 2:1651273/1‑91 (MQ=255) ttCAGTACCTCTTTCCATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTCAAGTCGTTGAATTGTta > 1:3378064/1‑91 (MQ=255) tCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTtat < 2:2374105/91‑1 (MQ=255) | GAAAAAGATGAACCAGCACATCAACAAGCCCCAAATATCGAAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGA‑TAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTAT > USA300TCH1516_ALE/549373‑549551 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |