BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	549463 =	215 (1.060)	21 (0.130)	10/130	NT	12.1%	intergenic (+13/‑216)	ftsH/hslO	ATP‑dependent zinc metalloprotease FtsH/33 kDa chaperonin
*	?	USA300TCH1516_ALE	549502 =	130 (0.790)	21 (0.130)	10/130	NT	12.1%	intergenic (+52/‑177)	ftsH/hslO	ATP‑dependent zinc metalloprotease FtsH/33 kDa chaperonin

Only 100 of 256 total aligned reads displayed.

AAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTAAAACAAGTTACTTCATTATTTAGA  >  USA300TCH1516_ALE/549413‑549592

aaaaaCCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGGAAGAGGTACttt                                                                                           <  1:3050159/91‑1 (MQ=255)

 aaaaCCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACtttt                                                                                          <  2:3125315/91‑1 (MQ=255)

  aaaCCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTa                                                                                         >  2:1644126/1‑91 (MQ=255)

   aaCCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTAt                                                                                        <  1:3297679/91‑1 (MQ=255)

      cTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGt                                                                                     >  1:2973119/1‑91 (MQ=255)

      cTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGt                                                                                     >  2:2775575/1‑91 (MQ=255)

      cTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGt                                                                                     >  2:511429/1‑91 (MQ=255)

      cTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGt                                                                                     <  1:2461335/91‑1 (MQ=255)

       ttACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGtt                                                                                    <  1:2667379/91‑1 (MQ=255)

        tcaacgacttaaaatctaatacgtattttcaaaaacgataaaagtacctctttctatgataaagttatagaaagaggtactTTTATCGttt                                                                                   <  1:583550‑M2/10‑1 (MQ=255)

        tACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGttt                                                                                   >  1:1570840/1‑91 (MQ=255)

         aCGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGtttt                                                                                  >  2:3000725/1‑91 (MQ=255)

         aCGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGtttt                                                                                  <  1:1897274/91‑1 (MQ=255)

         aCGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGtttt                                                                                  >  1:1368720/1‑91 (MQ=255)

         aCGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGtttt                                                                                  <  1:3127547/91‑1 (MQ=255)

           gATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTg                                                                                >  2:3058084/1‑91 (MQ=255)

            aTCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGa                                                                               >  2:3383311/1‑91 (MQ=255)

              ccAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGaaa                                                                             >  1:2788365/1‑91 (MQ=255)

              ccAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGaaa                                                                             >  1:1234330/1‑91 (MQ=255)

              ccAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGaaa                                                                             >  1:1868985/1‑91 (MQ=255)

               cAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGaaaa                                                                            >  2:2572475/1‑91 (MQ=255)

               cAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGaaaa                                                                            <  1:68275/91‑1 (MQ=255)

                aaaTCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAAt                                                                           <  1:2580310/91‑1 (MQ=255)

                 aaTCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATa                                                                          <  1:2337908/91‑1 (MQ=255)

                    cACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGt                                                                       >  1:1000571/1‑91 (MQ=255)

                    cACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGt                                                                       <  2:1887312/91‑1 (MQ=255)

                    cACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGt                                                                       <  1:3611340/91‑1 (MQ=255)

                    cACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGt                                                                       >  2:1299719/1‑91 (MQ=255)

                    cACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGt                                                                       <  2:2081967/91‑1 (MQ=255)

                      cccAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTAt                                                                     >  1:3508007/1‑91 (MQ=255)

                       ccAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTAtt                                                                    <  2:1154297/91‑1 (MQ=255)

                       ccAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTAtt                                                                    <  2:3945864/91‑1 (MQ=255)

                       ccAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTAtt                                                                    >  2:684889/1‑91 (MQ=255)

                        cAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTa                                                                   >  2:1539399/1‑91 (MQ=255)

                            taattaataATCGATTATATGGAGTACCTCTTTCTATGATAGAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTGTTAGAtt                                                               <  2:1142624/90‑1 (MQ=255)

                            cAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGAtt                                                               <  2:506997/91‑1 (MQ=255)

                            cAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGAtt                                                               >  2:3786212/1‑91 (MQ=255)

                              ataaataaTCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGAtttt                                                             <  2:2301344/91‑1 (MQ=255)

                               taaataaTCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTa                                                            >  2:1639376/1‑91 (MQ=255)

                                aaataaTCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTCTaa                                                           >  2:319571/1‑91 (MQ=255)

                                   taatCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTc                                                        <  1:1800381/91‑1 (MQ=255)

                                    aatCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCg                                                       >  1:2309931/1‑91 (MQ=255)

                                     atCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGt                                                      <  2:1554602/91‑1 (MQ=255)

                                     atCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGt                                                      <  2:3333593/91‑1 (MQ=255)

                                     atCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGt                                                      <  2:2286237/91‑1 (MQ=255)

                                      tCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGtt                                                     <  2:978663/91‑1 (MQ=255)

                                        gATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGa                                                   >  1:798692/1‑91 (MQ=255)

                                         aTTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGaa                                                  >  2:2849870/1‑91 (MQ=255)

                                         aTTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGaa                                                  <  2:3623776/91‑1 (MQ=255)

                                          ttATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTGTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAAt                                                 <  2:3051832/91‑1 (MQ=255)

                                           tataTTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAAtt                                                <  2:2257930/91‑1 (MQ=255)

                                            atatTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTg                                               <  1:642093/91‑1 (MQ=255)

                                              atTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGtt                                             <  2:2511655/91‑1 (MQ=255)

                                               ttCAGTACCTCTTTCCATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTCAAGTCGTTGAATTGTta                                            >  1:3378064/1‑91 (MQ=255)

                                                tCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTtat                                           <  2:2374105/91‑1 (MQ=255)

                                                   GTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGATTATTCGTCTTAGATTTTAAGTCGTTGAATTGTTATAGc                                        <  2:145311‑M1/91‑1 (MQ=255)

                                                   GTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGc                                        <  2:2929605‑M1/91‑1 (MQ=255)

                                                   GTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGc                                        >  2:2490680‑M1/1‑91 (MQ=255)

                                                     ACCTCTTTCTATGATAAAGTTATAGACAGAGGTACTTTTATCGTTTTTGAAACTACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAg                                      >  1:1575549‑M1/1‑91 (MQ=255)

                                                      cctctttctataactttatcatagaaagaggtactTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGa                                     >  1:2805837‑M2/36‑91 (MQ=255)

                                                      cctctctctatatttttatcatagaaagaggtactTTTATCGTTTTTGAAAATACGTATTAGCTTTTATGTCGTTGACTTGTtatagagga                                     >  2:411456‑M2/36‑87 (MQ=255)

                                                         CTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTACGTCGTTGAATTGTTATAGCAGaaaa                                  <  2:763914‑M1/91‑1 (MQ=255)

                                                          tttctataactttatcatagaaagaggtactTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAaat                                 >  1:3309150‑M2/32‑91 (MQ=255)

                                                          tttctataactttatcatagaaagaggtactTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAaat                                 >  2:644563‑M2/32‑91 (MQ=255)

                                                          TTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAaat                                 >  1:2987592‑M1/1‑91 (MQ=255)

                                                           ttCTATGATGATGTTATAGAAAGAGGTACTTGTATCGTTTTTGAAAATAGGTATTAGATTGTAACTCGTTGAATTGTTATAGCAGAAaatg                                <  2:3278651/91‑2 (MQ=255)

                                                           TTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAaata                                <  1:85428‑M1/91‑1 (MQ=255)

                                                            tctataactttatcatagaaagaggtactTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAAAAaataa                               >  2:347854‑M2/30‑91 (MQ=255)

                                                             CTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAaataat                              <  1:3875368‑M1/91‑1 (MQ=255)

                                                              tataactttatcatagaaagaggtactTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAAtt                             >  1:2854182‑M2/28‑91 (MQ=255)

                                                              tataactttatcatagaaagaggtactTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAAtt                             >  2:359769‑M2/28‑91 (MQ=255)

                                                              TATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAAtt                             >  2:2474729‑M1/1‑91 (MQ=255)

                                                              TATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAAGAAtt                             >  2:2036641‑M1/1‑91 (MQ=255)

                                                               ataactttatcatagaaagaggtactTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGATGAATTGTTATAGCAGAAAATAATTg                            >  2:3741015‑M2/27‑91 (MQ=255)

                                                               ATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTg                            >  1:1116370‑M1/1‑91 (MQ=255)

                                                                TGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGt                           >  1:2939305‑M1/1‑91 (MQ=255)

                                                                TGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGt                           >  1:3193676‑M1/1‑91 (MQ=255)

                                                                TGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGt                           >  1:3865431‑M1/1‑91 (MQ=255)

                                                                TGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGt                           <  1:953280‑M1/91‑1 (MQ=255)

                                                                 gATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTa                          >  1:519818/1‑91 (MQ=255)

                                                                 gATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTa                          >  2:3235947/1‑91 (MQ=255)

                                                                    aaaGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTaaaa                       <  2:209447/91‑1 (MQ=255)

                                                                     aaGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATCGTAAAAc                      >  1:1974364/1‑91 (MQ=255)

                                                                      aGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTAAAACa                     >  1:2775937/1‑91 (MQ=255)

                                                                       gTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTAAAACaa                    >  2:2185200/1‑91 (MQ=255)

                                                                         tataGAAAGAGCTACTTTTATCGATTTTGAAAATACGTATTAGATTTTATGTCGTTGAAGTGTTATAGCAGAAAATAATTGTAAAACAAGt                  <  2:3009888/91‑1 (MQ=255)

                                                                          atagaaagaggtactTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTAAAACAAGtt                 >  1:200084‑M2/16‑91 (MQ=255)

                                                                          atagaaagaggtactTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTAAAACAAGtt                 >  2:104504‑M2/16‑91 (MQ=255)

                                                                           tagaaagaggtactTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTAAAACAAGTTa                >  2:1249611‑M2/15‑91 (MQ=255)

                                                                              aaagaggtactTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTAAAACAAGTTACtt             <  1:3658691‑M2/80‑1 (MQ=255)

                                                                               aagaggtactTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTAAAACAAGTTACTTc            >  1:428805‑M2/11‑91 (MQ=255)

                                                                                 gaggtactTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTAAAACAAGTTACTTCat          >  1:2497197‑M2/9‑91 (MQ=255)

                                                                                  aggtactTTTATCGTTTTTGAATATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTAAAACAAGTTACTTCatt         >  2:1977915‑M2/8‑91 (MQ=255)

                                                                                  aggtactTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTAAAACAAGTTACTTCatt         >  1:862139‑M2/8‑91 (MQ=255)

                                                                                   ggtactTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTAAAACAAGTTACTTcattg        >  2:3921715‑M2/7‑90 (MQ=255)

                                                                                   ggtactTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTAAAACAAGTTACTTCatta        >  1:3153780‑M2/7‑91 (MQ=255)

                                                                                   ggtactTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTAAAACAAGTTACTTCatta        >  1:604078‑M2/7‑91 (MQ=255)

                                                                                       ctTTTATCGTGTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTAAAACAAGTTACTTCATTATTTa    <  2:1484944‑M2/89‑1 (MQ=255)

                                                                                         tttATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTAAAACAAGTTACTTCATTATTTAGa  <  2:853114/91‑1 (MQ=255)

                                                                                         tttATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTAAAACAAGTTACTTCATTATTTAGa  <  2:1236413/91‑1 (MQ=255)

AAAAACCTTACGATCCAAATCACCCAGACAATAAATAATCGATTATATTCAGTACCTCTTTCTATGATAAAGTTATAGAAAGAGGTACTTTTATCGTTTTTGAAAATACGTATTAGATTTTAAGTCGTTGAATTGTTATAGCAGAAAATAATTGTAAAACAAGTTACTTCATTATTTAGA  >  USA300TCH1516_ALE/549413‑549592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.