| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 598649 | 110 (0.540) | 7 (0.040) | 4/124 | NT | 6.6% | intergenic (+198/+84) | tuf/yxeP_2 | Elongation factor Tu/putative hydrolase YxeP |
| ? | USA300TCH1516_ALE | = 598668 | 112 (0.710) | intergenic (+217/+65) | tuf/yxeP_2 | Elongation factor Tu/putative hydrolase YxeP | |||||
Only 100 of 265 total aligned reads displayed.
ATGAAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATT > USA300TCH1516_ALE/598559‑598738 | atgaAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGT < 2:1411831‑M1/91‑1 (MQ=255)atgaAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGT > 1:470205‑M1/1‑91 (MQ=255)atgaAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGT > 1:1708806‑M1/1‑91 (MQ=255)atgaAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCATTCAAAGT > 2:2814922‑M1/1‑91 (MQ=255) tgaAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCCCCCTTCAAAGtt > 2:3291788/1‑91 (MQ=255) gaAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGttt < 1:1105313/91‑1 (MQ=255) gaAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGttt < 2:1367085/91‑1 (MQ=255) gaAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGttt < 1:842348/91‑1 (MQ=255) gactgactAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCAt < 1:3796801/91‑1 (MQ=255) gactgactAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCAt < 1:165597/91‑1 (MQ=255) actgactAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCAtt < 2:675728/91‑1 (MQ=255) tgactAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCAtttt > 1:2596036/1‑91 (MQ=255) actAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCAtttttt > 1:2209116/1‑91 (MQ=255) taataaAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑Ca < 2:2867861/91‑1 (MQ=255) taaAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATg < 1:2826661/91‑1 (MQ=255) taaAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATg < 1:2354113/91‑1 (MQ=255) aaCTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCt < 2:2213053/91‑1 (MQ=255) aCTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCGTTTTTT‑CAATGTcaa > 1:1912421/1‑89 (MQ=255) aCTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTa < 1:762116‑M2/91‑2 (MQ=255) aCTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTa < 1:3434915‑M2/91‑2 (MQ=255) aCTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTa > 1:1758331‑M2/1‑90 (MQ=255) cTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTagacattgaaaaaatgaaaac < 2:139799‑M1/91‑22 (MQ=255) cTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTagacattgaaaaaatgaaaac < 2:139557‑M1/91‑22 (MQ=255) aattaagcatttaaattaattgaaagatatgaatctgagacataaactaatgAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTAc > 1:179416‑M1/53‑91 (MQ=255) ttATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTagacattgaaaaaatgaaaact < 2:3604123‑M1/91‑23 (MQ=255) ttATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTact < 2:1734185‑M2/91‑4 (MQ=255) attaagcatttaaattaattgaaagatatgaatctgagacataaactaatgAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACt > 1:1004131‑M1/52‑91 (MQ=255) ttaagcatttaaattaattgaaagatatgaatctgagacataaactaatgAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACtt > 1:981328‑M1/51‑91 (MQ=255) ataACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTacttt < 2:1202403‑M2/91‑6 (MQ=255) ataACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTacttt < 2:2899746‑M2/91‑6 (MQ=255) ataACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTacttt < 2:2900839‑M2/91‑6 (MQ=255) ataACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTacttt < 2:311485‑M2/91‑6 (MQ=255) taACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTagacattgaaaaaatgaaaactttg < 2:304354‑M1/91‑26 (MQ=255) aCTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTTTCAATGTCTcctttga < 2:3174815‑M2/91‑8 (MQ=255) aCTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTactttgaa > 1:615077‑M2/1‑83 (MQ=255) cTGATAATACTGTTTACATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTactttgcag < 1:1645550‑M2/91‑10 (MQ=255) cTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTactttgaag < 1:2388254‑M2/91‑10 (MQ=255) ataataCTGCTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTactttgaaggga < 1:1980859‑M2/91‑13 (MQ=255) ataCTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTactttgaagggagca > 2:3624055‑M2/1‑76 (MQ=255) taCTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTactttgaagggagcat > 1:2249667‑M2/1‑75 (MQ=255) gTTTAAATGAAATTGGTGAGTCTTGGTCATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCa < 2:3426369/91‑1 (MQ=25) gTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCa < 1:3491451/91‑1 (MQ=255) gTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTCTT‑CAATGTCTACTTTGAAGGGAGCATTTCa < 1:3775068/91‑1 (MQ=255) atttAAATAAAATTGTTGAGTCTTAGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑AAATGTCTACTTTGAAGGGAGCATTTCa < 2:2347087/90‑1 (MQ=255) tttAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCAt < 1:2012470/91‑1 (MQ=255) aaataaaATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAg < 1:1799851/91‑1 (MQ=255) aaataaaATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAg < 1:732066/91‑1 (MQ=255) aataagATTGTTGAGTCTTGGACATCGTAAAATGCTCCCGTCAAAGTTTTCATGTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGt < 1:3673451/91‑1 (MQ=37) aataaaATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGt < 1:3303403/91‑1 (MQ=255) aataaaATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGt < 1:2489885/91‑1 (MQ=255) ataaaATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGtt < 1:2746460/91‑1 (MQ=255) ataaaATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGtt < 2:839042/91‑1 (MQ=255) aaaTTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAGGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTAt > 2:3244805/1‑91 (MQ=255) aaTTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATg < 1:598573/91‑1 (MQ=255) aTTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGt < 1:2473879/91‑1 (MQ=255) ttgAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCa > 2:3487092/1‑91 (MQ=255) tgAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAg > 2:3935867/1‑91 (MQ=255) tCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTc > 1:1036861/1‑91 (MQ=255) tCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTc < 1:3940347/91‑1 (MQ=255) cTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCa < 1:3517158/91‑1 (MQ=255) ttGGTCATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCat < 1:3286677/91‑1 (MQ=255) ttGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCat < 1:1538863/91‑1 (MQ=255) ggACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCCCAGATTCatat > 1:510901/1‑91 (MQ=255) cATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCtt < 2:2676322/91‑1 (MQ=255) aTTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACGTCGAAGGGAGCATTTCAATAGTTTATGTCTCAGCTTCATATCttt > 2:1724576/1‑91 (MQ=21) ttGTAAATTTCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCATATTCATATCTTTc < 2:581245/91‑1 (MQ=255) ttGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGCAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTc > 2:363305/1‑91 (MQ=255) tGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCa > 1:1932280/1‑91 (MQ=255) gTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaa > 2:472366/1‑91 (MQ=255) tAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaat < 2:622804/91‑1 (MQ=255) tAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaat < 2:3845369/91‑1 (MQ=255) aaaaTGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaatt > 1:313359/1‑91 (MQ=255) aaaaTGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTATACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaatt < 2:880776/91‑1 (MQ=255) aaaTGCTCCCTTCAAAGTagacattgaaaaaatgaaaactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacag < 2:2191032‑M1/91‑74 (MQ=255) aaaTGCTCCCTTCAAAGTagacattgaaaaaatgaaaactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacag < 2:2599575‑M1/91‑74 (MQ=255) AAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaatta < 2:2042187‑M1/91‑1 (MQ=255) AATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaattaa > 2:92398‑M1/1‑91 (MQ=255) aTGCTCCCTTCAAAGTagacattgaaaaaatgaaaactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagta > 1:1097482‑M1/1‑16 (MQ=255) aTGCTCCCTTCAAAGTagacattgaaaaaatgaaaactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagta < 2:2128247‑M1/91‑76 (MQ=255) aTGCTCCCTTCAAAGTagacattgaaaaaatgaaaactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagta > 2:619330‑M1/1‑16 (MQ=255) ATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaattaat < 1:2913065‑M1/91‑1 (MQ=255) tGCTCCCTTTAAAGTagacattgaaaaaatgaaaactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagtat < 2:32905‑M1/91‑77 (MQ=255) tGCTCCCTTCAAAGTagacattgaaaaaatgaaaactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagtat < 1:3864642‑M1/91‑77 (MQ=255) TGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCaattaatt > 2:1575405‑M1/1‑91 (MQ=255) gCTCCCTTCAAAGTagacattgaaaaaatgaaaactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagtatt > 1:1332385‑M1/1‑14 (MQ=255) cTTCAAAGTagacattgaaaaaatgaaaactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagtattatcag < 1:3016769‑M1/91‑83 (MQ=255) cTTCAAAGTagacattgaaaaaatgaaaactttgaagggagcattttacaatgaccaagactcaacaattttatttaaacagtattatcag < 1:3329191‑M1/91‑83 (MQ=255) CTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATg > 2:1972539‑M1/1‑91 (MQ=255) TTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGc > 2:1257063‑M1/1‑91 (MQ=255) tCAAAGTagacattgaaaaaatgaaaactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagtattatcagtt < 1:2148464‑M1/91‑85 (MQ=255) tCAAAGTagacattgaaaaaatgaaaactttgaagggagcattttacaatgtccaagactcaacaactttatttaaacagtattatcagtt > 2:3678086‑M1/1‑7 (MQ=255) TCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTATTTTATGTCTCAGATTCATATCTTTCAATTAATTAAAATGCt > 2:3003697‑M1/1‑91 (MQ=255) cgAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCtt > 2:3962848‑M1/3‑91 (MQ=255) cAAAGTagacattgaaaaaatgaaaactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagtattatcagtta < 1:1632233‑M1/91‑86 (MQ=255) cAAAGTTTTCATTTTTT‑CAATGTCTactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagtattatcagcta < 2:304732‑M2/91‑67 (MQ=255) aaaGTTTTCATTTTTT‑CAATGTCTactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagtattatcagttat < 1:668920‑M2/91‑68 (MQ=255) aGTTTTCATTTTTT‑CAATGTCTactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagtattatcagttataa < 2:2358274‑M2/91‑70 (MQ=255) gTagacattgaaaaaatgaaaactttggaggcagcattgtacaatgtccaagactcaacaatgttatttaaacagtattatcagttataag > 2:3026915‑M1/1‑2 (MQ=255) GTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTTATTCGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAAtt < 2:1089442‑M1/91‑1 (MQ=255) tagacattgaaaaaatgaaaactttgaagggagcattttacaatgtccaagactcaacaattttatttaaacagtattatcagttgtaagt > 2:3634835‑M1/1‑1 (MQ=255) | ATGAAAGACTGACTAATAAAACTTATAACTGATAATACTGTTTAAATAAAATTGTTGAGTCTTGGACATTGTAAAATGCTCCCTTCAAAGTTTTCATTTTTT‑CAATGTCTACTTTGAAGGGAGCATTTCATTAGTTTATGTCTCAGATTCATATCTTTCAATTAATTTAAATGCTTAATT > USA300TCH1516_ALE/598559‑598738 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |