BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 637748	191 (0.940)	15 (0.080)	11/150	NT	7.9%	intergenic (‑431/+76)	USA300HOU_RS03030/pdxK	hypothetical protein/Pyridoxine kinase
*	?	USA300TCH1516_ALE	= 637782	169 (0.890)	15 (0.080)	11/150	NT	7.9%	intergenic (‑465/+42)	USA300HOU_RS03030/pdxK	hypothetical protein/Pyridoxine kinase

Only 100 of 260 total aligned reads displayed.

TGAAATTTTCAATAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTAATCGTTAAACCTCTGTTAC  >  USA300TCH1516_ALE/637658‑637838

  aaaTTTTCAATAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACcacatc                                                                                          <  2:2881131/91‑1 (MQ=255)

  aaaTTTTCAATAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACcacatc                                                                                          <  1:2953934/91‑1 (MQ=255)

  aaaTTTTCAATAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACcacatc                                                                                          >  2:456344/1‑91 (MQ=255)

   aaTTTTCAATAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACcacatca                                                                                         <  2:3356295/91‑1 (MQ=255)

    aTTTTCAATAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACcacatcac                                                                                        <  1:2530083/91‑1 (MQ=255)

     ttttCAATAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACcacatcaca                                                                                       <  2:2650021/91‑1 (MQ=255)

      tttCAATAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACcacatcacat                                                                                      >  2:1165835/1‑91 (MQ=255)

      tttCAATAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACcacatcacat                                                                                      >  2:748047/1‑91 (MQ=255)

      tttCAATAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATAAACAGAGCATGATGATTATAAAAAAATAACcacatcacat                                                                                      <  2:1702244/91‑1 (MQ=255)

       ttCAATAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATa                                                                                     <  1:1779930/91‑1 (MQ=255)

        tCAATAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATaa                                                                                    <  2:2331887/91‑1 (MQ=255)

         cAATAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCAAGATGATTATAAAAAAATATCCACATCACATaaa                                                                                   >  2:1679664/1‑91 (MQ=255)

         aaaTAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATaaa                                                                                   <  2:3653137/90‑1 (MQ=255)

          aaTAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAAt                                                                                  <  1:3561312/91‑1 (MQ=255)

           aTAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAAtt                                                                                 >  1:3593169/1‑91 (MQ=255)

            tAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTg                                                                                >  1:3484721/1‑91 (MQ=255)

            tAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTg                                                                                <  1:2068303/91‑1 (MQ=255)

            tAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTg                                                                                <  1:2716074/91‑1 (MQ=255)

            tAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTg                                                                                <  1:540786/91‑1 (MQ=255)

            tAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTg                                                                                <  1:696382/91‑1 (MQ=255)

             aaaaGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGa                                                                               <  2:2212834/91‑1 (MQ=255)

             aaaaGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGa                                                                               >  2:1577685/1‑91 (MQ=255)

             aaaaGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGa                                                                               >  1:100825/1‑91 (MQ=255)

             aaaaGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGa                                                                               <  2:588364/91‑1 (MQ=255)

               aaGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGt                                                                             <  1:1381491/91‑1 (MQ=255)

                aGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGtt                                                                            <  2:3609144/91‑1 (MQ=255)

                 gCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAACAAAATAACCACATCACATAAATTGAGTTc                                                                           >  1:3170148/1‑91 (MQ=255)

                 gCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTc                                                                           >  2:1381305/1‑91 (MQ=255)

                  cTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCa                                                                          <  1:3273065/91‑1 (MQ=255)

                    aataaCGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATa                                                                        >  1:666756/1‑91 (MQ=255)

                     ataaCGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATAc                                                                       >  2:2515881/1‑91 (MQ=255)

                     ataaCGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATAc                                                                       >  2:3931232/1‑91 (MQ=255)

                      taaTGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATAcc                                                                      <  1:3453808/91‑1 (MQ=255)

                      taaCGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACAtcacataaattgggtatgaact                                                                      <  2:1565040‑M1/91‑23 (MQ=255)

                       aaCGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATAccc                                                                     <  1:1494009/91‑1 (MQ=255)

                        aCGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTCTAAAAAAATAACCACATCACATAAATTGAGTTCATACCCa                                                                    >  2:1957047/1‑91 (MQ=255)

                        aCGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCa                                                                    <  1:2976866/91‑1 (MQ=255)

                        aCGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCa                                                                    <  2:3155565/91‑1 (MQ=255)

                        aCGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCa                                                                    <  1:2751725/91‑1 (MQ=255)

                        aCGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCa                                                                    <  2:2673154/91‑1 (MQ=255)

                            ttATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAAttt                                                                <  1:1691871/91‑1 (MQ=255)

                             tataTGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTa                                                               <  2:2584289/91‑1 (MQ=255)

                              atatGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTaa                                                              >  2:1786055/1‑91 (MQ=255)

                              atatGTAACTTTCAAAGTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAGATTGAGTTCATACCCAATTTaa                                                              <  2:1950203/91‑1 (MQ=255)

                               tatGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACAccacttaaattgggtatgaactcaatttatg                                                             <  1:3378558‑M1/91‑32 (MQ=255)

                                   tAACTTTCAAGTTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACAccacgtaaattgggtatgaactcaatttatgtgat                                                         <  2:2207377‑M1/91‑36 (MQ=255)

                                   tAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGt                                                         >  2:1329670‑M2/1‑90 (MQ=255)

                                    aaCTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGtg                                                        <  1:3905317‑M2/91‑3 (MQ=255)

                                    aaCTTTCAAATTGAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGtg                                                        >  2:3285346‑M2/1‑89 (MQ=255)

                                    aaCTTTCAAATTCAAATTATATACAGAGCATGATGAGTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGtg                                                        >  2:3285347‑M2/1‑89 (MQ=255)

                                       tttCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGtgtgg                                                     >  2:498758‑M2/1‑86 (MQ=255)

                                       tttCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAA‑TTAAGTGGTGTGGc                                                    <  2:929456/91‑1 (MQ=255)

                                         tCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACAccacttaaattgggtatgaactcaatttatgtgatgtggtt                                                   <  1:890182‑M1/91‑42 (MQ=255)

                                         tCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACAccacttaaattgggtatgaactcaatttatgtgatgtggtt                                                   <  1:1641380‑M1/91‑42 (MQ=255)

                                         tCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCACTTTAAGTGGTGTGGCt                                                   >  2:3778937/1‑91 (MQ=255)

                                         tCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCt                                                   <  1:2564080/91‑1 (MQ=255)

                                           aaaTTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCtaa                                                 <  1:1080763/91‑1 (MQ=255)

                                            aaTTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCtaat                                                >  2:1255855/1‑91 (MQ=255)

                                                tAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATg                                            <  1:200621/91‑1 (MQ=255)

                                                tAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATg                                            >  2:1085359/1‑91 (MQ=255)

                                                tAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATg                                            >  1:3127176/1‑91 (MQ=255)

                                                 aaaTTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGt                                           <  1:453972/91‑1 (MQ=255)

                                                 aaaTTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGt                                           >  1:2463720/1‑91 (MQ=255)

                                                  aaTTATATACAGAGCATGATGATTATAAAAAAATAACCACAccacttaaattgggtatgaactcaatttatgtgatgtggttattttttta                                          <  1:586704‑M1/91‑51 (MQ=255)

                                                       tataCAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGAttt                                     <  1:1808886/91‑1 (MQ=255)

                                                        ataCAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTta                                    <  2:2850019/91‑1 (MQ=255)

                                                         taCAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTtat                                   <  2:2734447/91‑1 (MQ=255)

                                                           cAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAg                                 <  1:1424503/91‑1 (MQ=255)

                                                            agagCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGAATTATAGa                                >  1:2209582/1‑91 (MQ=255)

                                                                 atgatgATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAAc                           <  1:989803/91‑1 (MQ=255)

                                                                 atgatgATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAAc                           <  1:3254039/91‑1 (MQ=255)

                                                                   gatgatTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCg                         <  1:1004951/91‑1 (MQ=255)

                                                                   gatgatTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCg                         >  2:251254/1‑91 (MQ=255)

                                                                   gatgatTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCGAATAATGTTGATTTATAGATGAACCg                         <  2:2248809/91‑1 (MQ=255)

                                                                    atgatTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGc                        <  2:725532/91‑1 (MQ=255)

                                                                    atgatTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGc                        >  1:43112/1‑91 (MQ=255)

                                                                    atgatTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGc                        <  1:1925067/91‑1 (MQ=255)

                                                                    atgagTATAAAAAAATAACCACATCACATGGATTAAGTTCATACCCAATGTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGCCCCGc                        <  2:1463273/91‑1 (MQ=255)

                                                                      gatTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCt                      <  1:1755321/91‑1 (MQ=255)

                                                                       atTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTa                     >  2:2072246/1‑91 (MQ=255)

                                                                        ttATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTaa                    <  1:2579027/91‑1 (MQ=255)

                                                                            aaaaaaaTAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTAATCGt                >  1:1715056/1‑91 (MQ=255)

                                                                            aaaaaaaTAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTAATCGt                >  1:1257374/1‑91 (MQ=255)

                                                                            aaaaaaaTAACCACATCACATAAATTGAGTTCATACCCAATCTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTAATCGt                <  2:3473188/91‑1 (MQ=255)

                                                                             taaaaaTAACCACATCACATAAATTGCGTTCATACCCAATTTAAGTGGTGTGGCTAATAATTTTGATTTATAGATGAACCGCCTAATCGtt               >  2:2420130/2‑91 (MQ=255)

                                                                             aaaaaaTAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTAATCGtt               >  2:3766909/1‑91 (MQ=255)

                                                                              aaaaaTAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTAATCGTTa              <  1:26282/91‑1 (MQ=255)

                                                                                aaaTAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTAATCGTTaaa            >  1:3865580/1‑91 (MQ=255)

                                                                                 aaTAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGtgtggttatttttttataatcatcatgctctgtatataatttaaatt           <  2:3440031‑M2/91‑48 (MQ=255)

                                                                                 aaTAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTAATCGTTAAAc           >  2:3733453/1‑91 (MQ=255)

                                                                                 aaTAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTAATCGTTAAAc           >  2:677848/1‑91 (MQ=255)

                                                                                   tAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTAATCGTTAAACct         <  2:1997749/91‑1 (MQ=255)

                                                                                   tAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTAATCGTTAAACct         <  1:3722737/91‑1 (MQ=255)

                                                                                    aaCCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTAATCGTTAAACctc        <  1:502079/91‑1 (MQ=255)

                                                                                     aCCACGTCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTAATCGTTAAACctct       <  2:3200475/91‑1 (MQ=255)

                                                                                       cacatcacatAAATTGAGTTCATACCCAATTTAAGTGGtgtggttatttttttataatcatcatgctctgtatataatttaaatttgaaag     <  1:2129908‑M2/91‑54 (MQ=255)

                                                                                       cacatcacatAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTAATCGTTAAACCTCTGt     >  1:1512230/1‑91 (MQ=255)

                                                                                       cacatcacatAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTAATCGTTAAACCTCTGt     >  1:3198310/1‑91 (MQ=255)

                                                                                          atcacatAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTAATCGTTAAACCTCTGTTAc  <  1:156212/91‑1 (MQ=255)

                                                                                          accacttaaattgggtatgaactcaatttatgtgatgtggttatttttttataatcatcatgctctgtatataatttaaatttgaaagtta  <  2:2035709‑M1/91‑91 (MQ=255)

TGAAATTTTCAATAAAAGCTAATAACGCTTATATGTAACTTTCAAATTTAAATTATATACAGAGCATGATGATTATAAAAAAATAACCACATCACATAAATTGAGTTCATACCCAATTTAAGTGGTGTGGCTAATAATGTTGATTTATAGATGAACCGCCTAATCGTTAAACCTCTGTTAC  >  USA300TCH1516_ALE/637658‑637838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.