BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	671388 =	198 (0.970)	9 (0.050)	6/140	NT	5.4%	intergenic (+13/‑375)	argS/nth_1	Arginine‑‑tRNA ligase/Endonuclease III
*	?	USA300TCH1516_ALE	671434 =	142 (0.800)	9 (0.050)	6/140	NT	5.4%	intergenic (+59/‑329)	argS/nth_1	Arginine‑‑tRNA ligase/Endonuclease III

Only 100 of 250 total aligned reads displayed.

GCTATGATTGAAGCGGTCAGAATTACATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATA  >  USA300TCH1516_ALE/671298‑671478

tcttatgcagttgtgcagagcatccaactgtgttcctcttaaccttattcacatactaagcattccccaatatgtcacatacctaaaaaaa                                                                                            >  2:523411‑M1/91‑91 (MQ=255)

 cttatgcagttgtgcagagcatccaactgtgttccccttaaccttattcacatactaagcattccccaatatgtcacatacctaaaaaaac                                                                                           <  1:1154954‑M1/2‑1 (MQ=255)

  ttatgcagttgtgcagagcatccaactgtgttcctcttaaccttattcacatactaagcattccccaatatgtcacatacctaaaaaaaca                                                                                          <  1:1034757‑M1/3‑1 (MQ=255)

  ttatgcagttgtgcagagcatccaactgtgttcctctaaaccttattcacatactaagcattcccgaatatgtcacatacctaaacaaaca                                                                                          <  1:3684915‑M1/3‑1 (MQ=255)

    tGATTGAAGCGGTCAGAATTACATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATGAATGTAAGAACATTTATATACACt                                                                                        >  2:3684915/1‑91 (MQ=255)

    tGATTGAAGCGGTCAGAATTACATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACt                                                                                        >  1:1293426/1‑91 (MQ=255)

      gcagttgtgcagagcatccaactgtgttcctcttaaccttattcacatactaagcattccccaatatgtcacatacctaaaaaaACACTcc                                                                                      <  1:52269‑M1/7‑1 (MQ=255)

      gcagttgtgcagagcatccaactgtgttcctcttaaccttattcacatactaagcattccccaatatgtcacatacctaaaaaaACACTcc                                                                                      <  1:1915913‑M1/7‑1 (MQ=255)

      gcagttgtgcagagcatccaactgtgttcctcttaaccttattcacatactaagcattccccaatatgtcacatacctaaaaaaACACTcc                                                                                      <  1:1915869‑M1/7‑1 (MQ=255)

      aTTGAAGCGGTCAGAATTACATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTcc                                                                                      <  2:1074478/91‑1 (MQ=255)

       cagttgtgcagagcatccaactgtgttcctcttaaccttattcacatactaagcattccccaatatgtcacatacctaaaaaaACACTCCa                                                                                     >  1:3306395‑M1/84‑91 (MQ=255)

       cagttgtgcagagcatccaactgtgttcctcttaaccttattcacatactaagcattccccaatatgtcacatacctaaaaaaACACTCCa                                                                                     <  1:2753032‑M1/8‑1 (MQ=255)

         ggaGCGGTCAGAATTACATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAAc                                                                                   <  2:1848389/89‑1 (MQ=255)

         gAAGCGGTCAGAATTACATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAAc                                                                                   <  2:1508393/91‑1 (MQ=255)

          aaGCGGTCAGAATTACATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACg                                                                                  >  2:2491552/1‑91 (MQ=255)

           aGCGGTCAGAATTACATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGt                                                                                 >  2:2997508/1‑91 (MQ=255)

            gCGGTCAGAATTACATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTa                                                                                <  2:2949555/91‑1 (MQ=255)

               gTCAGAATTACATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTagag                                                                             <  1:711579/91‑1 (MQ=255)

               gTCAGAATTACATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTagag                                                                             <  1:711490/91‑1 (MQ=255)

               gTCAGAATTACATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTagag                                                                             <  2:2117569/91‑1 (MQ=255)

                tCAGAATTACATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGt                                                                            <  1:2304126/91‑1 (MQ=255)

                tCAGAATTACATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGt                                                                            <  1:3765830/91‑1 (MQ=255)

                 cAGAATTACATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGtt                                                                           >  2:2735998/1‑91 (MQ=255)

                   gAATTACATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTtc                                                                         >  1:2162195/1‑91 (MQ=255)

                    aaatACATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTtct                                                                        <  2:116074/88‑1 (MQ=255)

                        aCATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGaa                                                                    >  1:767022/1‑91 (MQ=255)

                        aCATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGaa                                                                    >  1:3810013/1‑91 (MQ=255)

                         cATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGaaa                                                                   >  2:1131176/1‑91 (MQ=255)

                             gAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGACCATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATa                                                               >  2:2043212/1‑91 (MQ=255)

                              aaagaTGCATTGGCAAGGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATAc                                                              <  2:695715/91‑1 (MQ=255)

                              aaaaaTGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATAc                                                              <  2:2582732/91‑1 (MQ=255)

                                aaaTGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACtt                                                            <  2:1185045/91‑1 (MQ=255)

                                    gCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTtgtg                                                        <  2:2424092/91‑1 (MQ=255)

                                     cttaaccttattcacatactaagcattccccaatatgtcacatacctaaaaaaACACTCCAACGTAGAGTTTCTCGAAAGATACTTTgtgt                                                       >  1:2220580‑M1/54‑91 (MQ=255)

                                       ttGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTg                                                     >  1:229575/1‑91 (MQ=255)

                                        tGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTgg                                                    <  1:1841920/91‑1 (MQ=255)

                                         ggCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGa                                                   <  1:2277121/91‑1 (MQ=255)

                                         ggCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGa                                                   <  2:2260503/91‑1 (MQ=255)

                                          gCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAg                                                  <  2:2814358/91‑1 (MQ=255)

                                          gCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAg                                                  <  1:2657676/91‑1 (MQ=255)

                                          gCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAg                                                  <  1:2657410/91‑1 (MQ=255)

                                          gCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAg                                                  <  2:54695/91‑1 (MQ=255)

                                          ccttattcacatactaagcattccccaatatgtcacatacctaaaaaaACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAg                                                  >  1:144442‑M1/49‑91 (MQ=255)

                                          ccttattcacatactaagcattccccaatatgtcacatacctaaaaaaACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAg                                                  >  1:1715454‑M1/49‑91 (MQ=255)

                                           cAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAgt                                                 <  1:2361000/91‑1 (MQ=255)

                                           cAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAgt                                                 <  1:196045/91‑1 (MQ=255)

                                            ttattcacatactaagcattccccaatatgtcacatacctaaaaaaACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAgtg                                                >  1:804905‑M1/47‑91 (MQ=255)

                                            aaTGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAgtg                                                <  1:444476/91‑1 (MQ=255)

                                             aTGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAgtgt                                               <  1:1824500/91‑1 (MQ=255)

                                              tGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGtt                                              >  1:2873494/1‑91 (MQ=255)

                                                 tCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGttttt                                           <  1:120871/91‑1 (MQ=255)

                                                  cGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGtttttt                                          <  2:2308778/91‑1 (MQ=255)

                                                  cGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGtttttt                                          >  2:407667/1‑91 (MQ=255)

                                                   ggTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGttttttt                                         >  1:3216193/1‑91 (MQ=255)

                                                   ggTGTAAGCGCACCGGAATCAATGTAAGAACATTTATATACACTCCAAAGTAGAGTTTCTCGAAAGATACTTTGTGATCGAGTGtcttttt                                         >  2:1265652/1‑91 (MQ=255)

                                                    gtgtAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTa                                        >  1:3717562/1‑91 (MQ=255)

                                                    gtgtAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTa                                        <  1:1626593/91‑1 (MQ=255)

                                                    gtgtAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTa                                        <  2:3900748/91‑1 (MQ=255)

                                                     tgtAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAg                                       <  2:2466848/91‑1 (MQ=255)

                                                     tgtAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAg                                       >  1:2580487/1‑91 (MQ=255)

                                                     tgtAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGCAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAg                                       >  2:360537/1‑91 (MQ=255)

                                                      gtAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAgg                                      >  2:3274346/1‑91 (MQ=255)

                                                        aaGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTa                                    >  1:994889/1‑91 (MQ=255)

                                                         aGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTAt                                   >  1:847202/1‑91 (MQ=255)

                                                           cgcACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTAtgt                                 <  1:1604134/91‑1 (MQ=255)

                                                           cgcACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTAtgt                                 <  2:1511193/91‑1 (MQ=255)

                                                            gcACCTGAATCAATGTGAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTAtgtg                                <  2:3032398/91‑1 (MQ=255)

                                                            gcACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTAtgtg                                >  1:3193367/1‑91 (MQ=255)

                                                             cACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGa                               <  2:1835446/91‑1 (MQ=255)

                                                               ccTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGTCa                             >  2:1203724/1‑91 (MQ=255)

                                                               ccTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACa                             >  1:3490288/1‑91 (MQ=255)

                                                                  gAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACatat                          >  2:3081358/1‑91 (MQ=255)

                                                                  gAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACatat                          >  2:888149/1‑91 (MQ=255)

                                                                  gAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACatat                          >  1:1148308/1‑91 (MQ=255)

                                                                   aagcAATGTAAGAACATTTATATACACTCCGACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATAtt                         <  2:1331711/88‑1 (MQ=255)

                                                                   aaTCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATAtt                         >  2:3486895/1‑91 (MQ=255)

                                                                    aTCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTg                        <  1:3232049/91‑1 (MQ=255)

                                                                    aTCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTg                        >  1:3544247/1‑91 (MQ=255)

                                                                     tCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTgg                       >  2:2313891/1‑91 (MQ=255)

                                                                        aTGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGa                    >  2:1333138/1‑91 (MQ=255)

                                                                          gTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAAt                  <  2:2272351/91‑1 (MQ=255)

                                                                           tAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATg                 >  2:2508966/1‑91 (MQ=255)

                                                                            aaGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGc                <  2:3530341/91‑1 (MQ=255)

                                                                            aaGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGCTTTTTTAGGTATGTGACATATTGGGGCATGc                >  1:3014906/1‑91 (MQ=255)

                                                                              gAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCtt              <  1:3112091/91‑1 (MQ=255)

                                                                                aCATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAg            <  1:865274/91‑1 (MQ=255)

                                                                                  aTTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTa          >  2:1650231/1‑91 (MQ=255)

                                                                                   tttATATACACTTCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTAt         <  2:3285479/91‑1 (MQ=255)

                                                                                   tttATATACACTACAACGTAGAGTTTCTCGAAAGATACTTTGTGCTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTAt         >  2:1305828/1‑91 (MQ=255)

                                                                                    ttATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTTACATATTGGGGAATGCTTAGTAtg        >  2:2606497/1‑91 (MQ=255)

                                                                                    ttATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTGGTAtg        >  2:650655/1‑91 (MQ=255)

                                                                                     tatataCACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTAtgt       <  1:2054219/91‑1 (MQ=255)

                                                                                      atataCACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTAtgtg      >  2:2026752/1‑91 (MQ=255)

                                                                                       tataCACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGCATGCTTAGTATGTGa     >  2:1664536/1‑91 (MQ=255)

                                                                                       tataCACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGa     <  2:815237/91‑1 (MQ=255)

                                                                                       tataCACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGa     >  1:1093435/1‑91 (MQ=255)

                                                                                       tataCACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGa     >  1:3065031/1‑91 (MQ=255)

                                                                                          ACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATa  >  1:2619634‑M1/1‑91 (MQ=255)

                                                                                          ACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATa  >  1:328523‑M1/1‑91 (MQ=255)

                                                                                          ACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATa  >  2:2138876‑M1/1‑91 (MQ=255)

GCTATGATTGAAGCGGTCAGAATTACATTGAAAAATGCATTGGCAATGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATA  >  USA300TCH1516_ALE/671298‑671478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.