BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	671388 =	198 (0.970)	9 (0.050)	6/140	NT	5.4%	intergenic (+13/‑375)	argS/nth_1	Arginine‑‑tRNA ligase/Endonuclease III
*	?	USA300TCH1516_ALE	671434 =	142 (0.800)	9 (0.050)	6/140	NT	5.4%	intergenic (+59/‑329)	argS/nth_1	Arginine‑‑tRNA ligase/Endonuclease III

Only 100 of 225 total aligned reads displayed.

TGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAAGAG  >  USA300TCH1516_ALE/671344‑671524

tGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGtt                                                                                            >  1:2873494/1‑91 (MQ=255)

 ggTCGGCGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGttt                                                                                           >  1:3079144/1‑91 (MQ=255)

  gTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGtttt                                                                                          <  1:1902722/91‑1 (MQ=255)

    cGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGtttttt                                                                                        <  2:2308778/91‑1 (MQ=255)

    cGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAAAGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGtttttt                                                                                        >  2:3486147/1‑91 (MQ=255)

     ggTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGttttttt                                                                                       >  2:150981/1‑91 (MQ=255)

     ggTGTAAGCGCACCTGAATCAATGTAAGAACATGTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTgtttgttt                                                                                       >  2:2560877/1‑91 (MQ=255)

       tgtAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAg                                                                                     <  2:2466848/91‑1 (MQ=255)

       tgtAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAg                                                                                     >  1:2580487/1‑91 (MQ=255)

       tgtAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGCAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAg                                                                                     >  2:360537/1‑91 (MQ=255)

        gtAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAgg                                                                                    >  2:3274346/1‑91 (MQ=255)

           aGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTAt                                                                                 >  1:847202/1‑91 (MQ=255)

            gcgcACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTAtg                                                                                <  1:374635/91‑1 (MQ=255)

             cgcACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTAtgt                                                                               <  2:1545467/91‑1 (MQ=255)

             cgcACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTAtgt                                                                               <  1:1604134/91‑1 (MQ=255)

              gcACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTAtgtg                                                                              >  1:3193367/1‑91 (MQ=255)

              gcACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTAtgtg                                                                              <  2:3853470/91‑1 (MQ=255)

               cACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGa                                                                             <  1:3715236/91‑1 (MQ=255)

                aCCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCCCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATCTGAc                                                                            >  1:3285776/1‑91 (MQ=255)

                 ccTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGTCa                                                                           >  2:1203724/1‑91 (MQ=255)

                 ccTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACa                                                                           >  1:3490288/1‑91 (MQ=255)

                    gAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACatat                                                                        >  2:3081358/1‑91 (MQ=255)

                    gAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACatat                                                                        >  1:829553/1‑91 (MQ=255)

                    gAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACatat                                                                        >  1:1148308/1‑91 (MQ=255)

                    gAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACatat                                                                        >  2:888149/1‑91 (MQ=255)

                     aagcAATGTAAGAACATTTATATACACTCCGACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATAtt                                                                       <  2:1331711/88‑1 (MQ=255)

                     aaTCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATAtt                                                                       <  2:284278/91‑1 (MQ=255)

                      aTCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTg                                                                      <  1:3232049/91‑1 (MQ=255)

                       tCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTgg                                                                     >  2:2313891/1‑91 (MQ=255)

                       atatgtcacatacctaaaaaaacactccaacacaaagtatctttcgagaaactctacgttggagtgtTTTTTTAGGTATGTGACATATTgg                                                                     >  1:3927372‑M2/68‑91 (MQ=255)

                         aaTGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTgggg                                                                   <  2:794060/91‑1 (MQ=255)

                          aTGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGa                                                                  >  1:1834008/1‑91 (MQ=255)

                           tGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGaa                                                                 >  1:2598048/1‑91 (MQ=255)

                             tAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATg                                                               >  1:2148595/1‑91 (MQ=255)

                             tAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATg                                                               >  2:2508966/1‑91 (MQ=255)

                              aaGAACATTTATATTCACTCCAACGTAGAGTTTCTCGAAATATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAAttc                                                              <  2:1842629/91‑3 (MQ=255)

                              aaGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGc                                                              <  1:3205349/91‑1 (MQ=255)

                              aaGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGCTTTTTTAGGTATGTGACATATTGGGGCATGc                                                              >  1:3014906/1‑91 (MQ=255)

                                gAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCtt                                                            <  1:3112091/91‑1 (MQ=255)

                                 aaCATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTa                                                           <  2:3157770/91‑1 (MQ=255)

                                  aCATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAg                                                          <  1:865274/91‑1 (MQ=255)

                                    aTTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTa                                                        >  2:1650231/1‑91 (MQ=255)

                                     tttATATACACTTCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTAt                                                       <  2:3285479/91‑1 (MQ=255)

                                     tttATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTAt                                                       >  2:1305968/1‑91 (MQ=255)

                                     tttATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTAt                                                       <  2:280415/91‑1 (MQ=255)

                                      ttATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTTACATATTGGGGAATGCTTAGTAtg                                                      >  2:2606497/1‑91 (MQ=255)

                                      ttATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTGGTAtg                                                      >  2:650655/1‑91 (MQ=255)

                                      ttATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTAtg                                                      <  1:116889/91‑1 (MQ=255)

                                       tatataCACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGCATGCTTAGTAtgt                                                     >  1:1925085/1‑91 (MQ=255)

                                       tatataCACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTAtgt                                                     >  1:2032746/1‑91 (MQ=255)

                                       tatataCACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTAtgt                                                     >  2:2070831/1‑91 (MQ=255)

                                        ctataCACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTAtgtg                                                    <  2:3927420/90‑1 (MQ=255)

                                        atataCACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTAtgtg                                                    >  2:2026752/1‑91 (MQ=255)

                                         tataCACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGCATGCTTAGTATGTGa                                                   >  2:1664536/1‑91 (MQ=255)

                                         tataCACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGa                                                   >  1:1093435/1‑91 (MQ=255)

                                          ataCACTCCAACGTAGAGTTTCTCGAAAGATCCTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGaa                                                  <  2:2131965/91‑1 (MQ=255)

                                           taCACTCCAACGTAGAGTTTCTCGAAAGATGCTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAAt                                                 <  2:129859/91‑1 (MQ=255)

                                            ACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATa                                                >  2:2138877‑M1/1‑91 (MQ=255)

                                             CACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATaa                                               <  1:2941085‑M1/91‑1 (MQ=255)

                                               ctccaacacaaagtatctttcgagaaactctacgttggagtgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAgg                                             >  1:1715454‑M2/44‑91 (MQ=255)

                                               ctccaacacaaagtatctttcgagaaactctacgttggagtgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAgg                                             >  1:144442‑M2/44‑91 (MQ=255)

                                                TCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGt                                            >  1:1675258‑M1/1‑91 (MQ=255)

                                                  CAACGTAGAGTTTGTCGAAAGATACTTTGTGTTGGAGTGTTTTATTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTa                                          >  1:3954728‑M1/1‑91 (MQ=255)

                                                   AACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTaa                                         >  1:885077‑M1/1‑91 (MQ=255)

                                                    acacaaagtatctttcgagaaactctacgttggagtgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAag                                        >  1:2220580‑M2/39‑91 (MQ=255)

                                                    ACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAag                                        <  1:632407‑M1/91‑1 (MQ=255)

                                                     CGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAaga                                       <  2:3784544‑M1/91‑1 (MQ=255)

                                                       tAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAgg                                     <  1:2290385/91‑1 (MQ=255)

                                                       tAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAgg                                     <  2:1565935/91‑1 (MQ=255)

                                                        agagTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGa                                    >  2:1474570/1‑91 (MQ=255)

                                                         gagTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGaa                                   >  1:2650813/1‑91 (MQ=255)

                                                            tttCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAacac                                >  2:1257340/1‑91 (MQ=255)

                                                             ttCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAAcaca                               <  2:1100952/91‑1 (MQ=255)

                                                              tctcGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAg                              <  2:1773006/91‑1 (MQ=255)

                                                                 cGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTg                           >  1:1822868/1‑91 (MQ=255)

                                                                 cGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTg                           <  2:1894256/91‑1 (MQ=255)

                                                                 cGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTg                           <  2:3540573/91‑1 (MQ=255)

                                                                  gAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTgg                          <  2:2529534/91‑1 (MQ=255)

                                                                   aaaGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGa                         <  2:2844538/91‑1 (MQ=255)

                                                                    aaGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGAt                        <  2:3684686/91‑1 (MQ=255)

                                                                      gATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGc                      <  1:1762829/91‑1 (MQ=255)

                                                                          cTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTg                  <  1:45526/91‑1 (MQ=255)

                                                                           tttGTGTTGGAGTGTTTTTTTAGGTATGTGACGTATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGc                 <  2:1132638/91‑1 (MQ=255)

                                                                           tttGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGc                 >  1:138601/1‑91 (MQ=255)

                                                                            ttGTGTTGGAGTGTTTTTTTATTTTTGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGca                >  2:1721/1‑91 (MQ=255)

                                                                            ttGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGca                >  1:2966557/1‑91 (MQ=255)

                                                                            ttGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGca                <  1:3660465/91‑1 (MQ=255)

                                                                            ttGTGTTGGAGTGTTATTTTAGGTATGTGACATATTGGGGAATGCTCAGTATGTGAATAAGGGTAAGAGGAACACAGCTGGATGCTCTGca                >  2:2396855/1‑91 (MQ=255)

                                                                               tgtTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACaa             <  1:2688362/91‑1 (MQ=255)

                                                                                   ggagtgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGc         <  1:1915912‑M2/84‑1 (MQ=255)

                                                                                   ggagtgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGc         <  1:52269‑M2/84‑1 (MQ=255)

                                                                                   ggagtgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGCATGCTCTGCACAACTGc         >  2:1405310‑M2/8‑91 (MQ=255)

                                                                                     agtgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCAt       <  2:3526942‑M2/86‑1 (MQ=255)

                                                                                      gtgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATa      >  1:3452842‑M2/5‑91 (MQ=255)

                                                                                       tgtTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATaa     <  1:1034757‑M2/88‑1 (MQ=255)

                                                                                         tTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAaga   >  2:2997373‑M2/2‑91 (MQ=255)

                                                                                         tTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAaga   >  2:523411‑M2/2‑91 (MQ=255)

                                                                                         tTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAaga   >  2:108399‑M2/2‑91 (MQ=255)

                                                                                          ttttttAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAagag  <  1:154745/91‑1 (MQ=255)

                                                                                          ttttttAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAagag  <  2:1832017/91‑1 (MQ=255)

TGGTCGGTGTAAGCGCACCTGAATCAATGTAAGAACATTTATATACACTCCAACGTAGAGTTTCTCGAAAGATACTTTGTGTTGGAGTGTTTTTTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAAGAG  >  USA300TCH1516_ALE/671344‑671524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.