| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 724910 | 172 (0.840) | 26 (0.150) | 11/140 | NT | 13.4% | intergenic (+30/‑204) | feuC_1/dhaK | Iron‑uptake system permease protein FeuC/PTS‑dependent dihydroxyacetone kinase, dihydroxyacetone‑binding subunit DhaK |
| ? | USA300TCH1516_ALE | = 724929 | 186 (1.050) | intergenic (+49/‑185) | feuC_1/dhaK | Iron‑uptake system permease protein FeuC/PTS‑dependent dihydroxyacetone kinase, dihydroxyacetone‑binding subunit DhaK | |||||
Only 100 of 284 total aligned reads displayed.
CGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTAT > USA300TCH1516_ALE/724820‑725000 | cGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAA < 2:1036514‑M1/91‑1 (MQ=255) gTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAg < 2:415759/91‑1 (MQ=255) gTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAg < 2:1772518/91‑1 (MQ=255) tAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAgg > 2:3213834/1‑91 (MQ=255) tAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAgg < 1:3839013/91‑1 (MQ=255) tAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAgg > 2:3598746/1‑91 (MQ=255) aGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGc < 2:1502131/91‑1 (MQ=255) aGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGc < 1:2379339/91‑1 (MQ=255) aaTTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACt < 1:2188376/91‑1 (MQ=255) ttattGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACttt > 1:3109540/1‑91 (MQ=255) tattGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTtta > 2:395741/1‑91 (MQ=255) attGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACGTATTGCTATGAAAGGCACTttat > 2:3723547/1‑91 (MQ=255) ttGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTttatt < 1:3357235/91‑1 (MQ=255) ttGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTttatt > 1:1620166/1‑91 (MQ=255) tGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTttatta > 2:2325048/1‑91 (MQ=255) gTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATtata < 1:3706677/91‑1 (MQ=255) tGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATaa > 1:3201843/1‑91 (MQ=255) tGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATaa < 1:2717113/91‑1 (MQ=255) gCACCGTATTTCTTATATTTAATGTACAAAAAGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagt < 2:3365756‑M1/91‑17 (MQ=255) aaCCGTATTTCTTATATTTAATAAAAAAAAAAAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAgg < 2:2757220/90‑1 (MQ=255) aCCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgc < 1:713456‑M1/91‑19 (MQ=255) aCCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgc < 1:1519846‑M1/91‑19 (MQ=255) aCCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgc < 1:2823356‑M1/91‑19 (MQ=255) cGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTt < 2:1832245‑M2/91‑2 (MQ=255) gTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgcctt < 1:3465746‑M1/91‑22 (MQ=255) gTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgcctt < 2:2489914‑M1/91‑22 (MQ=255) gTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgcctt < 1:2975953‑M1/91‑22 (MQ=255) tttCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgcctttca < 1:1605405‑M1/91‑25 (MQ=255) ttCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcat > 2:1920704‑M2/1‑85 (MQ=255) tCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcata > 2:1575892‑M2/1‑84 (MQ=255) tataTTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatagca > 2:1865816‑M2/1‑81 (MQ=255) atTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCAttt < 2:2808033/91‑1 (MQ=255) tttAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCAtttt < 2:2678012/91‑1 (MQ=255) tttAATATAAAAAAAAAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCAtttt < 2:3901028/91‑1 (MQ=255) tAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTCTATCATCAGGCTTTTCCTAGCAtttctt > 2:849724/1‑91 (MQ=255) aaTGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTttta > 2:142353/1‑91 (MQ=255) aaTGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTttta > 1:3312675/1‑91 (MQ=255) aTGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTtttat < 2:3740463/91‑1 (MQ=255) aCAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTaa < 1:1920714/91‑1 (MQ=255) cAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAAt > 1:2085157/1‑91 (MQ=255) aaaaaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAAt < 2:3315473/90‑1 (MQ=255) aaaaGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGa < 2:1635366/91‑1 (MQ=255) aaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGCAAGGCACTTTATTATAAGGCTATTCATAGCATTTTTTCTTTAATGAg > 2:3492931/1‑91 (MQ=255) aCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGc > 2:120584/1‑91 (MQ=255) aCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGc > 1:2540622/1‑91 (MQ=255) aCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGc < 1:1864924/91‑1 (MQ=255) aaaaTGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacac > 2:3767241‑M2/1‑60 (MQ=255) aaaaTGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACt > 2:3562344/1‑91 (MQ=255) aaaaTGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACt > 1:353380/1‑91 (MQ=255) aaaTGTATAGTGTCAATGGACACAACTAATTGCTAGGAAAGGCACTTTATTATAAGGCTTTTCAAAGCATTTTTTATATAATGAGCCACTc > 2:2748147/1‑91 (MQ=255) aaTGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCa > 2:3149218/1‑91 (MQ=255) gTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGa < 1:664438/91‑1 (MQ=255) tataGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGAc > 2:1886968/1‑91 (MQ=255) ataGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACt < 1:1769772/91‑1 (MQ=255) aGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtat < 1:1060036/91‑1 (MQ=255) gtgtCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgcctttcatagcaataagttgtggccattgacactatacatttt > 2:3766407‑M1/1‑31 (MQ=255) gtgtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtatt < 2:1602179/91‑1 (MQ=255) gtgtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtatt < 2:76322/91‑1 (MQ=255) gtgtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtatt < 1:2808373/91‑1 (MQ=255) gtgtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtatt < 1:1991771/91‑1 (MQ=255) gtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtattta < 1:100196/91‑1 (MQ=255) tCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtatttat < 2:2129977/91‑1 (MQ=255) cAATGGACACAACTTGTTGCTATGAAAGGCACTTTATTATAATGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtatttatt < 2:2963667/91‑1 (MQ=255) aTGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTAtttt < 2:694681/91‑1 (MQ=255) gACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTc > 1:1476244/1‑91 (MQ=255) gACACAACTTATTGCCATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTc > 2:594675/1‑91 (MQ=255) acacAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCa < 2:2274448/91‑1 (MQ=255) acacAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCa > 1:1182894/1‑91 (MQ=255) acacAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCa > 2:2510208/1‑91 (MQ=255) cacaACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCat > 2:3706983/1‑90 (MQ=255) acaACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTTaat > 2:2713984/1‑91 (MQ=255) acaACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaat > 2:1181914/1‑91 (MQ=255) caACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaata > 2:1156988/1‑91 (MQ=255) caACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaata < 2:1097751/91‑1 (MQ=255) cTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATg < 1:3601135/91‑1 (MQ=255) cTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATg < 2:2347124/91‑1 (MQ=255) ttATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGa > 2:2031029/1‑91 (MQ=255) tATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGaa > 1:1466880/1‑91 (MQ=255) aTTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAAc > 1:1225249/1‑91 (MQ=255) aTTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTAATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAAc > 1:3140705/1‑91 (MQ=255) ttGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGTAcc > 1:410556/1‑91 (MQ=255) tGCTATGAAGagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatata < 1:3785538‑M1/91‑82 (MQ=255) tGCTATGAAAagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatata < 1:236395‑M1/91‑82 (MQ=255) tGCTATGAAAagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatata > 2:384301‑M1/1‑10 (MQ=255) tGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCa < 1:3230353/91‑1 (MQ=255) tGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCa > 1:3728681/1‑91 (MQ=255) cTATGAAAagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataag > 2:1830567‑M1/1‑8 (MQ=255) cTATGAAAagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataaa > 2:3920751‑M1/1‑8 (MQ=255) tATGAAAagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtactttaaatataaga < 1:3041958‑M1/91‑85 (MQ=255) tATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTa > 2:2592452/1‑91 (MQ=255) tATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTa > 1:262997/1‑91 (MQ=255) tATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTa > 1:773887/1‑91 (MQ=255) aTGAAAGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaa < 1:3611144‑M2/91‑67 (MQ=255) tGAAAagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaa > 1:908218‑M1/1‑5 (MQ=255) tGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACACTTAAg > 2:1345560/1‑91 (MQ=255) aaaagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaata < 1:2286532‑M1/91‑89 (MQ=255) aaaagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaata < 1:2287245‑M1/91‑89 (MQ=255) aaGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTa > 1:136548/1‑91 (MQ=255) aagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaatacg < 1:1546937‑M1/91‑91 (MQ=255) aGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTAt > 1:1294388/1‑91 (MQ=255) | CGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTAT > USA300TCH1516_ALE/724820‑725000 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |