| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 724910 | 172 (0.840) | 26 (0.150) | 11/140 | NT | 13.4% | intergenic (+30/‑204) | feuC_1/dhaK | Iron‑uptake system permease protein FeuC/PTS‑dependent dihydroxyacetone kinase, dihydroxyacetone‑binding subunit DhaK |
| ? | USA300TCH1516_ALE | = 724929 | 186 (1.050) | intergenic (+49/‑185) | feuC_1/dhaK | Iron‑uptake system permease protein FeuC/PTS‑dependent dihydroxyacetone kinase, dihydroxyacetone‑binding subunit DhaK | |||||
Only 100 of 254 total aligned reads displayed.
CGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATCAAA > USA300TCH1516_ALE/724840‑725018 | tttCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttca > 1:908218‑M2/1‑86 (MQ=255) ttCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcat < 2:1431818‑M2/91‑7 (MQ=255) tCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcata > 2:1575892‑M2/1‑84 (MQ=255) tCTTATATCTACTGTACCAAACGAAAAATGTATAGTGTCAACGGACACAACTTATTGCTATGAAAGGCACTTCATTATAAGGCTaatcata < 2:1154785‑M2/91‑8 (MQ=255) cTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatag > 2:1830567‑M2/1‑83 (MQ=255) tataTTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGGCACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatagca > 2:3483028‑M2/1‑81 (MQ=255) tataTTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatagca < 2:399299‑M2/91‑11 (MQ=255) tataTTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatagca > 2:384273‑M2/1‑81 (MQ=255) tataTTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatagca < 1:236395‑M2/91‑11 (MQ=255) atatTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCAt > 2:881201/1‑91 (MQ=255) atatTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCAt < 1:2259444/91‑1 (MQ=255) atTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCAttt < 1:2227881/91‑1 (MQ=255) atTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCAttt < 2:769291/91‑1 (MQ=255) tAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCAtttttt < 2:2731612/91‑1 (MQ=255) aaTGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTttta > 1:3312675/1‑91 (MQ=255) aaTGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTttta > 2:2091542/1‑91 (MQ=255) aTGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTtttat < 2:3740463/91‑1 (MQ=255) aTGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTtttat > 2:2713500/1‑91 (MQ=255) gTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTtttattt < 2:1188646/91‑1 (MQ=255) aCAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTaa < 1:1920714/91‑1 (MQ=255) cAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAAt > 1:3623912/1‑91 (MQ=255) cAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAAt > 2:2481504/1‑91 (MQ=255) aaaaaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAAt < 2:3315473/90‑1 (MQ=255) aaaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAAACTTTTCATAGCATTTTTTATTTAATGa < 2:1635017/91‑1 (MQ=255) aCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGc > 1:2540622/1‑91 (MQ=255) aCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGc < 1:1236922/91‑1 (MQ=255) aCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGc < 1:1864924/91‑1 (MQ=255) cGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGcc < 1:2302929/91‑1 (MQ=255) aaaaTGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACt > 2:3562344/1‑91 (MQ=255) aaaTGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTc > 1:1301985/1‑91 (MQ=255) aaTGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCa > 2:2285369/1‑91 (MQ=255) aaTGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCa > 1:1929401/1‑91 (MQ=255) gTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGa < 1:664438/91‑1 (MQ=255) tataGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGAc < 2:618927/91‑1 (MQ=255) tataGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGAc > 2:1886679/1‑91 (MQ=255) agttgtgtCCATTGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGAc > 2:2934257/5‑91 (MQ=255) ataGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACt < 1:1769772/91‑1 (MQ=255) taGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACta > 1:3836517/1‑91 (MQ=255) aGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtat < 1:1060036/91‑1 (MQ=255) gtgtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtatt < 2:76005/91‑1 (MQ=255) gtgtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtatt < 1:2030188/91‑1 (MQ=255) tgtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtattt > 2:2159068/1‑91 (MQ=255) gtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtattta < 1:100196/91‑1 (MQ=255) tCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtatttat < 2:2682280/91‑1 (MQ=255) cAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtatttatt < 2:590291/91‑1 (MQ=255) aaTGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTatttattt < 2:1901887/91‑1 (MQ=255) gACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTc > 1:1476244/1‑91 (MQ=255) gACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTc < 1:1222744/91‑1 (MQ=255) cacaACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCat > 2:3706983/1‑90 (MQ=255) acaACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaat > 2:1181914/1‑91 (MQ=255) acaACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaat < 2:304629/91‑1 (MQ=255) cTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATg < 2:3127057/91‑1 (MQ=255) cTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATg < 1:3601135/91‑1 (MQ=255) aTTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAAc < 2:2640937/91‑1 (MQ=255) aTTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTAATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAAc > 1:3140705/1‑91 (MQ=255) tGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCa < 1:3230353/91‑1 (MQ=255) tGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCa > 1:3728681/1‑91 (MQ=255) agCTATGAAAGGCAC‑TTATTATAAGGCTTTTCATAGGATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCAt < 2:3912968/90‑1 (MQ=255) tATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTa > 2:2592452/1‑91 (MQ=255) tATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTa > 1:773887/1‑91 (MQ=255) tGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACACTTAAg > 2:1345560/1‑91 (MQ=255) gAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGt > 1:2677172/1‑91 (MQ=255) gAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGt < 2:1242758/91‑1 (MQ=255) aaaGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGtt > 1:1386442/1‑91 (MQ=255) aaaGGCACTTTATTATAAAGCTTTTCATAGCATTTTTTATTTAAGGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGtt < 2:3861437/91‑1 (MQ=255) aaGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaatac < 1:2975824‑M2/91‑71 (MQ=255) aaGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaatac < 1:3465746‑M2/91‑71 (MQ=255) aGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTAt > 1:1294388/1‑91 (MQ=255) ggCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATc < 2:3280458/91‑1 (MQ=255) gCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaatacggt < 1:2823278‑M2/91‑74 (MQ=255) gCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaatacggt < 1:713458‑M2/91‑74 (MQ=255) gCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaatacggt < 1:1519846‑M2/91‑74 (MQ=255) gCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaatacggt < 1:2981624‑M2/91‑74 (MQ=255) gCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCa > 1:1544100/1‑91 (MQ=255) cACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaatacggtg < 2:3748668‑M2/91‑75 (MQ=255) cACTTTATTATAAGACTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCaa > 2:3361539/1‑91 (MQ=255) aCTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAag > 1:2629462/1‑91 (MQ=255) aCTTTATTAGAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAag < 1:3784444/91‑1 (MQ=255) cTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAaga > 1:2074443/1‑91 (MQ=255) cTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAaga < 1:1705138/91‑1 (MQ=255) cTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAaga < 1:1556269/91‑1 (MQ=255) tttATTATAAGGCTTTTCATAGCATTTTTTTTTTTTTTTTCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAagag > 2:3504603/1‑91 (MQ=255) tttATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAagag < 1:380554/91‑1 (MQ=255) tttATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAagag > 1:314434/1‑91 (MQ=255) ttattaTAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaatacggtgcacc < 2:2762257‑M2/91‑79 (MQ=255) ttattaTAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGCACCATTCAGTTATCAAGAgg > 2:1057593/1‑91 (MQ=255) ttattaTAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAgg > 1:503858/1‑91 (MQ=255) ttattaTAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAgg > 2:2012582/1‑91 (MQ=255) ttattaTAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAgg > 2:1753271/1‑91 (MQ=255) ttattaTAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAgg > 2:2333098/1‑91 (MQ=255) ttatAGGGCTTTTCATAGCATTCTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATc < 2:3195339/91‑1 (MQ=255) ttatAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATGTTTTCAATAATGAACCATTAAGTTATCAAGAGGATc > 2:3111040/1‑91 (MQ=255) tataAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCt < 1:2423720/91‑1 (MQ=255) taAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTa > 1:3543882/1‑91 (MQ=255) taAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTa > 2:2753591/1‑91 (MQ=255) taAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTa > 2:2507617/1‑91 (MQ=255) aGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACTATCAAGTTATCAAGTGGATCTTATc > 2:3171941/1‑91 (MQ=255) aGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGCTCTTATc > 2:1833459/1‑91 (MQ=255) aGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATc < 1:3869602/91‑1 (MQ=255) cTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAGTGAACCATTAAGTTATCAAGAGGATCTTATCaaa < 1:1453994/91‑1 (MQ=255) | CGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATCAAA > USA300TCH1516_ALE/724840‑725018 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |