New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 729265170 (0.830)23 (0.130) 8/136 NT 13.6% intergenic (+66/‑85) USA300HOU_RS03535/aes hypothetical protein/Acetyl esterase
?USA300TCH1516_ALE = 729282 147 (0.850)intergenic (+83/‑68) USA300HOU_RS03535/aes hypothetical protein/Acetyl esterase

Only 100 of 332 total aligned reads displayed.

TGCGGATAAAAAACATATTGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAAT  >  USA300TCH1516_ALE/729175‑729355
                                                                                          |                                                                                          
  cGGATAAAAAACATATTGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGtc                                                                                          >  2:1916233/1‑91 (MQ=255)
  cGGATAAAAAACATATTGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGtc                                                                                          >  1:328780/1‑91 (MQ=255)
    gATAAAAAACATATTGCTTACTACCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGGTTTATCCTTAAAAGCAATTCGtctc                                                                                        <  1:1402866/91‑1 (MQ=255)
    gATAAAAAACATATTGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGtctc                                                                                        >  1:3484387/1‑91 (MQ=255)
    gATAAAAAACATATTGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGtctc                                                                                        <  1:29439/91‑1 (MQ=255)
     aTAAAAAACATATTGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTctct                                                                                       >  2:2073328/1‑91 (MQ=255)
        tattatctttattcattacatcgtacctctctatttgttagacgctcatattaatagactgaataaatataAAAAGCAATTCGTCTCTAct                                                                                    >  1:938011‑M1/72‑91 (MQ=255)
        aaaaaCATATTGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTAct                                                                                    <  2:3555614/91‑1 (MQ=255)
         aaaaCATATTGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGcccgataag                                                                                   <  2:3069851‑M1/91‑10 (MQ=255)
         aaaaCATATTGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTActc                                                                                   <  2:1450305/91‑1 (MQ=255)
         aaaaCATATTGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTActc                                                                                   <  2:1450354/91‑1 (MQ=255)
         aaaaCATATTGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTActc                                                                                   <  1:1980112/91‑1 (MQ=255)
          aaaCATATTGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTActct                                                                                  <  1:3883948/91‑1 (MQ=255)
           aaCATATTGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCtt                                                                                 <  2:3390637/91‑1 (MQ=255)
            aCATATTGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTa                                                                                <  1:3602540/91‑1 (MQ=255)
              atatTGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATc                                                                              <  2:2250282/91‑1 (MQ=255)
                ttattcattacatcgttcctctctatttgttagacgctcatattaatagactgaataaatataAAAAGCAATTCGTCTCTACTCTTATCgg                                                                            >  2:554954‑M1/64‑91 (MQ=255)
                 tattcattacatcgtacctctctatttgttagacgctcatattaatagactgaataaatataAAAAGCAATTCGTCTCTACTCTTATCggg                                                                           >  1:2741305‑M1/63‑91 (MQ=255)
                  tGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGcccgataagagtagagac                                                                          <  1:2102287‑M1/91‑19 (MQ=255)
                  tGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGcccgataagagtagagac                                                                          <  1:3628791‑M1/91‑19 (MQ=255)
                  tGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGcccgataagagtagagac                                                                          <  1:3801498‑M1/91‑19 (MQ=255)
                  attcattacatcgtacctctctatttgttagtcgctcatattgatagactgaataaagataATAAGCAATTCGTCTCTGCTCTTATCGGGc                                                                          >  2:3272989‑M1/62‑91 (MQ=255)
                   gCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGcg                                                                         <  1:3840937‑M2/91‑3 (MQ=255)
                   gCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGcg                                                                         >  2:867228‑M2/1‑89 (MQ=255)
                   gCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGcg                                                                         <  1:1741210‑M2/91‑3 (MQ=255)
                   gCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGcg                                                                         >  1:1093540‑M2/1‑89 (MQ=255)
                      tAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGcccgataagagtagagacgaat                                                                      <  1:66294‑M1/91‑23 (MQ=255)
                       aaTATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCATTTCGcccgataagagtagagacgaatt                                                                     <  2:1767840‑M1/91‑24 (MQ=255)
                        atatCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGcccgataagagtagagacgaattg                                                                    <  2:2810071‑M1/91‑25 (MQ=255)
                        atatCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGcgaattg                                                                    <  1:3705904‑M2/91‑8 (MQ=255)
                         acatcgtacctctctatttgttagacgctcatattaatagactgaataaatataAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATtgt                                                                   >  1:3025740‑M1/55‑90 (MQ=255)
                         acatcgtacctctctatttgttagacgctcatattaatagactgaataaatataAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGc                                                                   >  1:2593026‑M1/55‑91 (MQ=255)
                         acatcgtacctctctatttgttagacgctcatattaatagactgaataaatataAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGc                                                                   >  2:805216‑M1/55‑91 (MQ=255)
                          atCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGcgaattgct                                                                  >  1:3315988‑M2/1‑82 (MQ=255)
                           atcgtacctctctatttgttagacgctcatattaatagactgaataaatataAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCtt                                                                 >  1:1560596‑M1/53‑91 (MQ=255)
                             atatGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGcgaattgctttt                                                               <  1:1144555‑M2/91‑13 (MQ=255)
                               atGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTta                                                             <  1:521797/91‑1 (MQ=255)
                               atGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTta                                                             >  1:1048343/1‑91 (MQ=255)
                                tGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTtat                                                            >  2:1342922/1‑91 (MQ=255)
                                 gAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTtata                                                           <  1:3531479/91‑1 (MQ=255)
                                 gAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTtata                                                           >  2:3503141/1‑91 (MQ=255)
                                    ggATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTAtattt                                                        <  1:100177/91‑1 (MQ=255)
                                    ggATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTAtattt                                                        <  1:2790790/91‑1 (MQ=255)
                                        atCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTc                                                    <  1:1457766/91‑1 (MQ=255)
                                        atCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTc                                                    >  1:2292215/1‑91 (MQ=255)
                                        atCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTc                                                    <  1:2437334/91‑1 (MQ=255)
                                        atCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTc                                                    >  2:1108055/1‑91 (MQ=255)
                                         tCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCa                                                   >  2:3587470/1‑91 (MQ=255)
                                          ccGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAg                                                  <  2:1840411/91‑1 (MQ=255)
                                          ccGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAg                                                  <  2:1210559/91‑1 (MQ=255)
                                          ccGAAACTTTACAATCGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACACTTATCGGGCGAATTGCTTTTTATATTTATTCAg                                                  <  2:3228636/91‑1 (MQ=255)
                                           cGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGt                                                 >  2:1199609/1‑91 (MQ=255)
                                                cTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTAtt                                            <  2:770314/91‑1 (MQ=255)
                                                 tttACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTa                                           >  1:144163/1‑91 (MQ=255)
                                                   tACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAat                                         >  2:2914367/1‑91 (MQ=255)
                                                   tACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAat                                         <  1:3416767/91‑1 (MQ=255)
                                                    aCAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAata                                        <  1:968908/91‑1 (MQ=255)
                                                      aaTTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATg                                      >  1:2650722/1‑91 (MQ=255)
                                                      aaTTCAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAACATg                                      >  1:3118576/1‑91 (MQ=255)
                                                       aTTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGa                                     <  1:677487/91‑1 (MQ=255)
                                                          gAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCg                                  <  2:409271/91‑1 (MQ=255)
                                                          gAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCg                                  >  2:2435086/1‑91 (MQ=255)
                                                             tCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCt                               <  2:914394/91‑1 (MQ=255)
                                                             tCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCt                               <  2:1723616/91‑1 (MQ=255)
                                                              cACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTa                              >  1:2501850/1‑91 (MQ=255)
                                                               aCTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTaa                             >  1:576922/1‑91 (MQ=255)
                                                               aCTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTaa                             >  2:1531671/1‑91 (MQ=255)
                                                                 tttGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACa                           <  2:214210/91‑1 (MQ=255)
                                                                  ttGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACaa                          <  2:3745088/91‑1 (MQ=255)
                                                                   tGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACaaa                         >  2:2676265/1‑91 (MQ=255)
                                                                    gTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAAt                        <  1:900063/91‑1 (MQ=255)
                                                                      tttAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATag                      <  1:73519/91‑1 (MQ=255)
                                                                      tttAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATag                      <  1:1873281/91‑1 (MQ=255)
                                                                         aaCCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATagaga                   >  2:3080195/1‑91 (MQ=255)
                                                                            cTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGt                <  2:3327142/91‑1 (MQ=255)
                                                                            cTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGt                <  2:294130/91‑1 (MQ=255)
                                                                             ttAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTa               <  2:646427/91‑1 (MQ=255)
                                                                             ttAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTa               <  1:3403420/91‑1 (MQ=255)
                                                                               aaaaGCAATTCGcccgataagagtagagacgaattgcttttaaggttaaaacaaagtgattcaattgtaaagtttcggatatccctcatat             <  2:1987315‑M1/91‑80 (MQ=255)
                                                                                aaaGCAATTCGcccgataagagtagagacgaattgcttttaaggttaaaacaaagtgattcaattgtaaagtttcggatatccctcatatg            >  1:1800803‑M1/1‑11 (MQ=255)
                                                                                AAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGa            >  1:3650599‑M1/1‑91 (MQ=255)
                                                                                  AGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATg          <  2:838251‑M1/91‑1 (MQ=255)
                                                                                   gCAATTCGcccgataagagtagagacgaattgcttttaaggttaaaacaaagtgattcaattgtaaagtttcggatatccctcatatgata         <  1:424658‑M1/91‑84 (MQ=255)
                                                                                    cAATTCGcccgataagagtagagacgaattgcttttaaggttaaaacaaagtgattcaattgtaaagtttcggatatccctcatatgatat        >  2:898578‑M1/1‑7 (MQ=255)
                                                                                    cAATTCGTCTCTACTCTTATCGGGcgaattgcttttaaggttaaaacaaagtgattcaattgtaaagtttcggatatccctcatatgatat        <  2:2810344‑M2/91‑68 (MQ=255)
                                                                                    CAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTa        >  2:1494558‑M1/1‑91 (MQ=255)
                                                                                    CAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTa        <  1:3051231‑M1/91‑1 (MQ=255)
                                                                                     AATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTaa       <  1:289052‑M1/91‑1 (MQ=255)
                                                                                     AATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTaa       >  2:3146615‑M1/1‑91 (MQ=255)
                                                                                      aTTCGTCTCTACTCTTATCGGGcgaattgcttttaaggttaaaacaaagtgattcaattgtaaagtttcggatatccctcatatgatatta      <  1:671483‑M2/91‑70 (MQ=255)
                                                                                      ATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAAt      <  1:2228504‑M1/91‑1 (MQ=255)
                                                                                      ATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAAt      >  1:293215‑M1/1‑91 (MQ=255)
                                                                                        tCGcccgataagagtagagacgaattgcttttaaggttaaaacaaagtgattcaattgtaaagtttcggatatccctcatatgatattaag    >  1:3210844‑M1/1‑3 (MQ=255)
                                                                                         cGcccgataagagtagagacgaattgcttttaaggttaaaacaaagtgattcaattgtaaagtttcggatatccctcatatgatattaagc   >  1:1093459‑M1/1‑2 (MQ=255)
                                                                                         cGTCTCTACTCTTATCGGGcgaattgcttttaaggttaaaacaaagtgattcaattgtaaagtttcggatatccctcatatgatattaagc   <  1:1287054‑M2/91‑73 (MQ=255)
                                                                                         cGTCTCTACTCTTATCGGGcgaattgcttttaaggttaaaacaaagtgattcaattgtaaagtttcggatatccctcatatgatattaagc   <  1:3238377‑M2/91‑73 (MQ=255)
                                                                                          gTCTCTACTCTTATCGGGcgaattgcttttaaggttaaaacaaagtgattcaattgtaaagtttcggatatccctcatatgatattaagca  <  1:2102351‑M2/91‑74 (MQ=255)
                                                                                          gTCTCTACTCTTATCGGGcgaattgcttttaaggttaaaacaaagtgattcaattgtaaagtttcggatatccctcatatgatattaagca  <  1:1722701‑M2/91‑74 (MQ=255)
                                                                                          gTCTCTACTCTTATCGGGcgaattgcttttaaggttaaaacaaagtgattcaattgtaaagtttcggatatccctcatatgatattaagca  <  2:980331‑M2/91‑74 (MQ=255)
                                                                                          GTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAAt  <  1:1222683‑M1/91‑1 (MQ=255)
                                                                                          |                                                                                          
TGCGGATAAAAAACATATTGCTTAATATCATATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAAT  >  USA300TCH1516_ALE/729175‑729355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.