BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 745527	220 (1.080)	20 (0.100)	12/154	NT	8.0%	intergenic (+13/‑177)	sarX/USA300HOU_RS03615	HTH‑type transcriptional regulator SarX/putative transcriptional regulatory protein
*	?	USA300TCH1516_ALE	= 745553	251 (1.280)	20 (0.100)	12/154	NT	8.0%	intergenic (+39/‑151)	sarX/USA300HOU_RS03615	HTH‑type transcriptional regulator SarX/putative transcriptional regulatory protein

Only 100 of 290 total aligned reads displayed.

ATATTTATTTAAATAATGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAAT  >  USA300TCH1516_ALE/745438‑745618

atatttatTTAAATAATGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAgtgt                                                                                            <  2:1712217/91‑1 (MQ=255)

  atttatttAAATAATGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCg                                                                                          <  2:1394822/91‑1 (MQ=255)

  atttatttAAATAATGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCg                                                                                          >  1:2502474/1‑91 (MQ=255)

  atttatttAAATAATGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCg                                                                                          <  1:2108874/91‑1 (MQ=255)

   tttatttaAATAATGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGa                                                                                         <  2:976049/91‑1 (MQ=255)

     tatttaAATAATGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGaaa                                                                                       <  2:630951/91‑1 (MQ=255)

       tttaAATAATGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGc                                                                                     <  2:3523469/91‑1 (MQ=255)

        ttaAATAATGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCa                                                                                    <  1:349324/91‑1 (MQ=255)

         taAATAATGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCAt                                                                                   <  2:201885/91‑1 (MQ=255)

         taAATAATGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCAt                                                                                   <  2:1572775/91‑1 (MQ=255)

         taAATAATGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCAt                                                                                   <  1:2309218/91‑1 (MQ=255)

          aaaTAATGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATa                                                                                  >  1:269082/1‑91 (MQ=255)

          aaaTAATGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATa                                                                                  <  2:1950943/91‑1 (MQ=255)

            ataatGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGa                                                                                >  2:1362042/1‑91 (MQ=255)

            ataatGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGa                                                                                >  2:3338154/1‑91 (MQ=255)

             taatGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGaa                                                                               <  1:2607301/91‑1 (MQ=255)

             taatGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATGTTTAAATATTTAATTGAAATTGAGTGccgataagcaaatt                                                                               <  1:1025651‑M1/91‑15 (MQ=255)

               atgatgATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAAtt                                                                             <  1:3721653/91‑1 (MQ=255)

                 gcagatATATCTAAATTGAATGCTTTATTCGAAGATGTAGAACAATTTTTAAATATTTCTTTGAAATTGAGTGTCGAAAGCTTAGCATTTg                                                                           >  2:2225027/4‑91 (MQ=255)

                 gatgatATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTg                                                                           <  2:2765259/91‑1 (MQ=255)

                 gatgatATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTg                                                                           <  2:2041883/91‑1 (MQ=255)

                  atgatATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGc                                                                          >  2:2636871/1‑91 (MQ=255)

                    gatATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCtt                                                                        <  1:1609937/91‑1 (MQ=255)

                      tatatCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGccgataagcaaattctatgcttt                                                                      <  1:89308‑M1/91‑24 (MQ=255)

                       atatCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATc                                                                     <  1:2424283/91‑1 (MQ=255)

                       atatCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATc                                                                     >  1:2879386/1‑91 (MQ=255)

                       atatCTAAAATTAATGCTTTATTTGAAGATGGAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATc                                                                     <  1:669225/91‑1 (MQ=255)

                        tatCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCg                                                                    <  1:718444/91‑1 (MQ=255)

                          tCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAGATTGAGTGccgatgagcaagttctatgctttcgac                                                                  <  2:2203279‑M1/91‑28 (MQ=255)

                            tAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGccgataagcaaattctatgctttcgacac                                                                <  1:791852‑M1/91‑30 (MQ=255)

                            tAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGcac                                                                >  2:3539185‑M2/1‑88 (MQ=255)

                              aaTTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGccgataagcaaattctatgctttcgacactc                                                              <  1:1082555‑M1/91‑32 (MQ=255)

                              aaTTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGccgataagcaaattctatgctttcgacactc                                                              <  2:452080‑M1/91‑32 (MQ=255)

                              aaTTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACAt                                                              >  2:924116/1‑91 (MQ=255)

                              aaTTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACAt                                                              >  2:2784217/1‑91 (MQ=255)

                              aaTTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACAt                                                              >  2:3216593/1‑91 (MQ=255)

                               aTTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACAtt                                                             <  1:1376847/91‑1 (MQ=255)

                               aTTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACAtt                                                             >  1:1456822/1‑91 (MQ=255)

                                gttAATGCTTTATTTGAAGATGTAGAACAATTTTTATATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACAttt                                                            <  2:3918759/90‑1 (MQ=255)

                                 ttAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACAtttt                                                           >  2:2918500/1‑91 (MQ=255)

                                   aaTGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTa                                                         >  1:814745/1‑91 (MQ=255)

                                    aTGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTaa                                                        >  2:190700/1‑91 (MQ=255)

                                    aTGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTaa                                                        >  1:620659/1‑91 (MQ=255)

                                     tGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAAt                                                       >  1:151824/1‑91 (MQ=255)

                                     tGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAAt                                                       >  2:338317/1‑91 (MQ=255)

                                      gCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAAtt                                                      >  2:1542201/1‑91 (MQ=255)

                                       cTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAAttt                                                     >  2:491184/1‑91 (MQ=255)

                                           aTTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATAc                                                 <  1:3179105/91‑1 (MQ=255)

                                            tttGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGGGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACa                                                <  1:3139798/91‑1 (MQ=255)

                                             ttGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACat                                               <  2:2958568/91‑1 (MQ=255)

                                             ttGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATCTGCTTATCGGCACATTTTTAATTTATACat                                               <  2:3788821/91‑1 (MQ=255)

                                               gAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACctat                                             >  1:3058938/1‑91 (MQ=255)

                                                aaGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATAtt                                            >  1:276845/1‑91 (MQ=255)

                                                aaGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATAtt                                            >  1:1742536/1‑91 (MQ=255)

                                                 aGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATAttt                                           <  1:411635/91‑1 (MQ=255)

                                                 aGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATAttt                                           <  1:410752/91‑1 (MQ=255)

                                                 aGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATAttt                                           <  1:3635679/91‑1 (MQ=255)

                                                  gATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATAtttt                                          >  1:179784/1‑91 (MQ=255)

                                                   aTGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTa                                         <  1:742207/91‑1 (MQ=255)

                                                    tGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTaa                                        >  2:1144746/1‑91 (MQ=255)

                                                    tGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTaa                                        <  2:1748770/91‑1 (MQ=255)

                                                    tGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTaa                                        >  2:2429813/1‑91 (MQ=255)

                                                    tGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTaa                                        >  1:1397250/1‑91 (MQ=255)

                                                    tGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTaa                                        >  1:3947071/1‑91 (MQ=255)

                                                    tGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCATATCGGCACATTTTTAATTTATACATATTTTaa                                        >  1:3235890/1‑91 (MQ=255)

                                                     gTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTaaa                                       >  1:3368301/1‑91 (MQ=255)

                                                        gAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACt                                    >  2:1794315/1‑91 (MQ=255)

                                                            aaTTTTTAAATATTTTATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGt                                >  2:1439008/1‑91 (MQ=255)

                                                            aaTTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATATAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGt                                <  2:1237987/91‑1 (MQ=255)

                                                             aTTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTa                               >  1:511204/1‑91 (MQ=255)

                                                             aTTTTTAAATATTGAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTa                               <  2:3621784/91‑1 (MQ=255)

                                                              tttttAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTaa                              >  1:1111888/1‑91 (MQ=255)

                                                              tttttAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTaa                              <  2:103600/91‑1 (MQ=255)

                                                              tttttAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTaa                              >  1:2349424/1‑91 (MQ=255)

                                                              tttttAAATATTCAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTaa                              >  1:3040609/1‑91 (MQ=255)

                                                               ttttAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAAc                             <  2:2485631/91‑1 (MQ=255)

                                                               ttttAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAAc                             <  2:1063857/91‑1 (MQ=255)

                                                                tttAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACa                            >  1:1145342/1‑91 (MQ=255)

                                                                 ttAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAg                           >  1:2257580/1‑91 (MQ=255)

                                                                  tAAATATTTAATTGAAATTGAGTGTCGAAAGCATAAAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGt                          <  2:1471181/91‑1 (MQ=255)

                                                                     atatTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTg                       <  1:3210350/91‑1 (MQ=255)

                                                                      tatTTAATTGAAATTGAGTGTCGAAAGCATAGTTTTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTga                      <  2:506247/91‑1 (MQ=255)

                                                                      tatTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTga                      >  1:254923/1‑91 (MQ=255)

                                                                       atTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTgaa                     <  1:527048/91‑1 (MQ=255)

                                                                          tAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTgaagaa                  <  2:449905/91‑1 (MQ=255)

                                                                          tAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTgaagaa                  <  1:3537439/91‑1 (MQ=255)

                                                                           aattgaaattgaGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGaaa                 <  1:3438027/91‑1 (MQ=255)

                                                                               gaaattgaGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGt             <  1:800202/91‑1 (MQ=255)

                                                                                   ttgaGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAAGTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGtt         <  1:3135875/91‑1 (MQ=255)

                                                                                    tgaGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTc        <  1:1938161/91‑1 (MQ=255)

                                                                                      aGTGTCGAACGCATAGAATTTGCTTATCGGcactcaatttcaattaaatatttaaaaatcgttctacatcgccaaataaagcattaaattt      <  2:3088523‑M2/91‑62 (MQ=255)

                                                                                       gtgtCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCaat     >  1:382688/1‑91 (MQ=255)

                                                                                       gtgtCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCaat     <  2:2703760/91‑1 (MQ=255)

                                                                                       gTGccgataagcaaattctatgctttcgacactcaatttcaattaaatatttaaaaattgttctacatcttcaaataaagcattaaattta     >  1:2678667‑M1/1‑3 (MQ=255)

                                                                                        tgtCGAAAGCATAGAATTTGCTTATCGGcactcaatttcaattaaatatttaaaaattgttctacatcttcaaataaagcattaaatttag    <  2:3953973‑M2/91‑64 (MQ=255)

                                                                                        tgtCGAAAGCATAGAATTTGCTTATCGGCACATTTTGAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCaata    <  2:3117493/91‑1 (MQ=255)

                                                                                         gtCGAAAGCATAGAATTTGCTTATCGGcactcaatttcaattaaatatttaaaaattgttctacatcttcaaataaagcattaaatttaga   <  1:3567549‑M2/91‑65 (MQ=255)

                                                                                         gtCGAAAGCATAGAATTTGCTTATCGGcactcaatttcaattaaatatttaaaaattgttctacatcttcaaataaagcattaaatttaga   <  1:579388‑M2/91‑65 (MQ=255)

                                                                                         gtCGAAAGCATAGAATTTGCTT‑TCGAcactcaatttcaattaaatatttaaaaattgttctacatcttcaaataaagcattaaatttagat  <  1:1246909‑M2/91‑66 (MQ=255)

                                                                                         gccgataagcaaattctatgctttcgacactcaatttcaattaaatatttaaaaattgttctacatcttcaaataaagcattaaatttaga   >  1:656676‑M1/1‑1 (MQ=255)

ATATTTATTTAAATAATGATGATATATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAAT  >  USA300TCH1516_ALE/745438‑745618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.