BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 745527	220 (1.080)	20 (0.100)	12/154	NT	8.0%	intergenic (+13/‑177)	sarX/USA300HOU_RS03615	HTH‑type transcriptional regulator SarX/putative transcriptional regulatory protein
*	?	USA300TCH1516_ALE	= 745553	251 (1.280)	20 (0.100)	12/154	NT	8.0%	intergenic (+39/‑151)	sarX/USA300HOU_RS03615	HTH‑type transcriptional regulator SarX/putative transcriptional regulatory protein

Only 100 of 311 total aligned reads displayed.

ATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAATGTATATAAACAT  >  USA300TCH1516_ALE/745463‑745645

 tCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGc                                                                                             >  1:656676‑M2/1‑90 (MQ=255)

   tAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGcac                                                                                           >  2:3539240‑M2/1‑88 (MQ=255)

   tAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGcac                                                                                           >  1:2678667‑M2/1‑88 (MQ=255)

      aTTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACAtt                                                                                        <  2:927122/91‑1 (MQ=255)

      aTTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACAtt                                                                                        <  1:1376995/91‑1 (MQ=255)

        ttAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACAtttt                                                                                      >  2:2918500/1‑91 (MQ=255)

        ttAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACAtttt                                                                                      <  2:3292236/91‑1 (MQ=255)

         tAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACAttttt                                                                                     <  2:1040951/91‑1 (MQ=255)

         tAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACAttttt                                                                                     >  1:2074962/1‑91 (MQ=255)

           aTGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTaa                                                                                   >  1:275407/1‑91 (MQ=255)

           aTGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTaa                                                                                   >  1:3623249/1‑91 (MQ=255)

           aTGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTaa                                                                                   >  1:3133610/1‑91 (MQ=255)

            tGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAAt                                                                                  >  2:338317/1‑91 (MQ=255)

            tGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAAt                                                                                  >  1:151824/1‑91 (MQ=255)

            tGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAAt                                                                                  >  1:2986406/1‑91 (MQ=255)

             gCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAATGCATAGAATTTGCTTATCGGCACATTTTTAAtt                                                                                 <  2:2455358/91‑1 (MQ=255)

             gCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAAtt                                                                                 <  2:1069804/91‑1 (MQ=255)

                 tATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTtata                                                                             <  1:861963/91‑1 (MQ=255)

                   tttGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGGGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACa                                                                           <  1:3139319/91‑1 (MQ=255)

                    ttGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATCTGCTTATCGGCACATTTTTAATTTATACat                                                                          <  2:3788821/91‑1 (MQ=255)

                      gAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACatat                                                                        >  2:1744940/1‑91 (MQ=255)

                       acattGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATAtt                                                                       >  1:1423278/5‑91 (MQ=255)

                       aaGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATAtt                                                                       >  2:551584/1‑91 (MQ=255)

                       aaGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATAtt                                                                       >  1:1742536/1‑91 (MQ=255)

                        aGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATAttt                                                                      <  1:2908903/91‑1 (MQ=255)

                        aGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATAttt                                                                      <  1:410790/91‑1 (MQ=255)

                         gATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATAtttt                                                                     >  2:194205/1‑91 (MQ=255)

                          aTGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTa                                                                    <  1:742207/91‑1 (MQ=255)

                           tGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTaa                                                                   >  2:1144746/1‑91 (MQ=255)

                           tGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTaa                                                                   >  1:3947071/1‑91 (MQ=255)

                           tGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCATATCGGCACATTTTTAATTTATACATATTTTaa                                                                   >  1:3235890/1‑91 (MQ=255)

                            gTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTaaa                                                                  >  1:3368301/1‑91 (MQ=255)

                               gAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACt                                                               >  2:1794577/1‑91 (MQ=255)

                                 aCAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTaa                                                             <  1:3764289/91‑1 (MQ=255)

                                  cAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAg                                                            <  1:2464060/91‑1 (MQ=255)

                                   aaTTTTTAAATATTTTATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGt                                                           >  2:1439008/1‑91 (MQ=255)

                                   aaTTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGt                                                           <  2:1237986/91‑1 (MQ=255)

                                    aTTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTa                                                          >  1:511204/1‑91 (MQ=255)

                                     tttttAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTaa                                                         >  1:1111888/1‑91 (MQ=255)

                                     tttttAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTaa                                                         >  1:2349424/1‑91 (MQ=255)

                                      ttttAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTaaa                                                        >  2:2489104/1‑90 (MQ=255)

                                      ttttAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAAc                                                        >  1:1935388/1‑91 (MQ=255)

                                       tttAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACa                                                       >  1:1145342/1‑91 (MQ=255)

                                         tAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGt                                                     >  1:250854/1‑91 (MQ=255)

                                         tAAATATTTAATTGAAATTGAGTGTCGAAAGCATAAAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGt                                                     <  2:1471181/91‑1 (MQ=255)

                                            atatTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTg                                                  <  1:3210350/91‑1 (MQ=255)

                                              atTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTgaa                                                <  1:621544/91‑1 (MQ=255)

                                              atTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTgaa                                                >  2:486932/1‑91 (MQ=255)

                                                ttAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTgaaga                                              <  1:3045307/91‑1 (MQ=255)

                                                 tAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTgaagaa                                             <  1:3537439/91‑1 (MQ=255)

                                                 tAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTgaagaa                                             <  2:449905/91‑1 (MQ=255)

                                                  aattgaaattgaGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGaaa                                            <  1:3438027/91‑1 (MQ=255)

                                                    ttgaaattgaGTGTCGAAAGCATAGAATTTGCTTAGCGGCACATTTTTAATATATAGATATTTTAAAACTAAGTAACAGTTTGAAGAAATc                                          <  2:2780700/91‑1 (MQ=255)

                                                      gaaattgaGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGt                                        <  1:800202/91‑1 (MQ=255)

                                                       aaattgaGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTa                                       <  2:1569501/91‑1 (MQ=255)

                                                             aGTGTCGAACGCATAGAATTTGCTTATCGGcactcaatttcaattaaatatttaaaaatcgttctacatcgccaaataaagcattaaattt                                 <  2:3088523‑M2/91‑62 (MQ=255)

                                                              gtgtCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCaat                                <  2:2703760/91‑1 (MQ=255)

                                                              gtgtCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCaat                                >  1:382688/1‑91 (MQ=255)

                                                               tgtCGAAAGCATAGAATTTGCTTATCGGCACATTTTGAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCaata                               <  2:3117493/91‑1 (MQ=255)

                                                                gtCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCaataa                              >  2:868514/1‑91 (MQ=255)

                                                                gtCGAAAGCATAGAATTTGCTT‑TCGAcactcaatttcaattaaatatttaaaaattgttctacatcttcaaataaagcattaaatttagat                             <  1:1246909‑M2/91‑66 (MQ=255)

                                                                 tCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCaataat                             <  2:616952/91‑1 (MQ=255)

                                                                  cGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATg                            >  2:1761599/1‑91 (MQ=255)

                                                                  cGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATg                            <  1:3694406/91‑1 (MQ=255)

                                                                   gAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGt                           <  2:1332132/91‑1 (MQ=255)

                                                                    aaaGCATAGAATTTGCTTATCGGcactcaatttcaattaaatatttaaaaattgttctacatcttcaaataaagcattaaatttagatata                          <  1:89308‑M2/91‑69 (MQ=255)

                                                                    aaaGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGtt                          <  1:2152608/91‑1 (MQ=255)

                                                                    aaaGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGtt                          <  1:1452760/91‑1 (MQ=255)

                                                                     aaGCATAGAATTTGCTTATCGGcactcaatttcaattaaatatttaaaaattgttctacatcttcaaataaagcattaaatttagatatat                         <  2:496459‑M2/91‑70 (MQ=255)

                                                                     aaGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTa                         >  1:181326/1‑91 (MQ=255)

                                                                      aGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTaa                        >  1:10693/1‑91 (MQ=255)

                                                                       gCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAAt                       <  2:294508/91‑1 (MQ=255)

                                                                        cATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAAtt                      <  2:3919388/91‑1 (MQ=255)

                                                                         aTAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATtg                     <  1:422725/91‑1 (MQ=255)

                                                                         aTAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATtg                     <  2:2112782/91‑1 (MQ=255)

                                                                         aTAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATtg                     <  2:3633507/91‑1 (MQ=255)

                                                                          tAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAGATCGTAGTTCAATAATGTTAATtgt                    <  2:3828734/91‑1 (MQ=255)

                                                                          tAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATtgt                    <  1:535358/91‑1 (MQ=255)

                                                                          tAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATtgt                    >  2:3490414/1‑91 (MQ=255)

                                                                            gAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGa                  >  2:1382253/1‑91 (MQ=255)

                                                                             aaTTTGCTTATCGGcactcaatttcaattaaatatttaaacattgttctacatcttcaaataaagcattaaatttagatatatcatcatta                 <  1:1025651‑M2/91‑78 (MQ=255)

                                                                             aaTTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGaa                 <  1:2184962/91‑1 (MQ=255)

                                                                             aaTTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGaa                 >  2:3343778/1‑91 (MQ=255)

                                                                                ttGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAAt              <  1:1481096/91‑1 (MQ=255)

                                                                                ttGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAAt              <  2:3013329/91‑1 (MQ=255)

                                                                                 tGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAATg             <  2:263657/91‑1 (MQ=255)

                                                                                 tGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAATg             >  2:3255415/1‑91 (MQ=255)

                                                                                 tGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAATg             <  2:1557178/91‑1 (MQ=255)

                                                                                 tGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAATg             <  2:2006984/91‑1 (MQ=255)

                                                                                  gCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAATGt            >  2:2869665/1‑91 (MQ=255)

                                                                                  gCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAATGt            >  1:3483177/1‑91 (MQ=255)

                                                                                   cTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAATGta           <  1:987081/91‑1 (MQ=255)

                                                                                   cTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAATGta           >  1:604662/1‑91 (MQ=255)

                                                                                   cTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAATGta           <  2:394642/91‑1 (MQ=255)

                                                                                    ttATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAATGtat          >  1:3177090/1‑91 (MQ=255)

                                                                                     tATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAATGtata         <  2:260245/91‑1 (MQ=255)

                                                                                     aaTCGGCACATTTTTAATATATACATATTTTAAAACGAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAATGtata         <  2:2804338/90‑1 (MQ=255)

                                                                                      aTCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAATGtatat        >  1:2778449/1‑91 (MQ=255)

                                                                                      aTCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAATGtatat        >  2:2291257/1‑91 (MQ=255)

                                                                                       tCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAATGtatata       <  2:2371926/91‑1 (MQ=255)

ATCTAAATTTAATGCTTTATTTGAAGATGTAGAACAATTTTTAAATATTTAATTGAAATTGAGTGTCGAAAGCATAGAATTTGCTTATCGGCACATTTTTAATTTATACATATTTTAAAACTAAGTAACAGTTTGAAGAAATCGTAGTTCAATAATGTTAATTGTGAAAATGTATATAAACAT  >  USA300TCH1516_ALE/745463‑745645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.