| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 893176 = | 178 (0.870) | 15 (0.090) | 9/136 | NT | 8.9% | intergenic (+177/‑73) | trxA_1/metN2 | Thioredoxin/Methionine import ATP‑binding protein MetN 2 |
| ? | USA300TCH1516_ALE | 893212 = | 155 (0.900) | intergenic (+213/‑37) | trxA_1/metN2 | Thioredoxin/Methionine import ATP‑binding protein MetN 2 | |||||
Only 100 of 323 total aligned reads displayed.
CCTACGAAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAA > USA300TCH1516_ALE/893086‑893266 | cTACGAAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGGGAAA‑CAATACTACTATTG < 1:1625396‑M1/91‑1 (MQ=255) acttctttatttttagtccgatattctttaacaacttcttttaattcaatctcgttgattcctccctgtgttgcttaataaaataaaaaat > 1:3408119‑M1/91‑91 (MQ=255) acttctttatttttagtccgatattctttaacaacttcttttaattcaatcacgttgattcctccctgtgttgcttaataaaataaaaaat > 2:3926908‑M1/91‑91 (MQ=255) tACGAAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGC > 2:237902‑M1/1‑91 (MQ=255) ttctttatttttagtccgatattctttaacaacttcttttaattcaatcacgttgattcctccctgtgttgcttaataaaataaaaaaTGc > 2:1412165‑M1/89‑91 (MQ=255) cGAAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTT < 2:2643067‑M1/91‑1 (MQ=255) ctttatttttagtccgatattctttaacaacttcttttaattcaatcacgttgattcctccctgtgttgcttaataaaataaaaaaTGCtt < 1:1320177‑M1/5‑1 (MQ=255) ctttatttttagtccgatattctttaacaacttcttttaattcaatcacgttgattcctccctgtgttgcttaataaaataaaaaaTGCtt < 1:2366891‑M1/5‑1 (MQ=255) ctttatttttagtccgatattctttaacaacttcttttaattcaatcacgttgattcctccctgtgttgcttaataaaataaaaaaTGCtt > 2:1505215‑M1/87‑91 (MQ=255) ttatttttagtccgatattctttaacaacttcttttaattcaatcacgttgattcctccctgtgttgcttaataaaatgaaaaaTGCTTtc > 1:3031787‑M1/85‑91 (MQ=255) tatttttagtccgatattctttaacaacttcttttaattcaatcacgttgattcctccctgtgttgcttaataaaataaaaaaTGCTTtct < 2:1366261‑M1/8‑1 (MQ=255) atttttagtccgatattctttaacaacttcttttaattcaatcacgttgattcctccctgtgttgcttaataaaataaaaaaTGCTTtctc > 2:811363‑M1/83‑91 (MQ=255) cGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAAT > 1:167414‑M1/1‑91 (MQ=255) tttagtccgatattctttaacaacttcttttaattcaatcacgttgattcctccctgtgttgcttaataaaataaaaaaTGCTTTCTCAAt < 2:2490117‑M1/12‑1 (MQ=255) tttagtccgatattctttaacaacttcttttaattcaatcacgttgattcctccctgtgttgcttaataaaataaaaaaTGCTTTCTCAAt < 2:3835755‑M1/12‑1 (MQ=255) tttagtccgatattctttaacaacttcttttaattcaatcacgttgattcctccctgtgttgcttaataaaataaaaaaTGCTTTCTCAAt < 1:1797008‑M1/12‑1 (MQ=255) tttagtccgatattctttaacaacttcttttaattcaatcacgtagattcctccctgtgttgcttaataaaataaaaaaTGCTTTCTCAAt < 2:1571127‑M1/12‑1 (MQ=255) gCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAAttt < 2:2655293/91‑1 (MQ=255) cAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAAtttt > 1:3212039/1‑91 (MQ=255) aaCCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAAttttt < 1:374003/91‑1 (MQ=255) ccGTCTTCTAAAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTTAATTTTTCt < 1:1970128/91‑1 (MQ=255) ccGTCTTATATAGAAATGGTGACAAGTCACATAAAGTTTTATCTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAAttttttt < 2:327408/91‑3 (MQ=255) ccgatattctttaacaacttcttttaattcaatcacgttgattcctccctgtgttgcttaataaaataaaaaaTGCTTTCTCAATTTTTCt > 1:1699489‑M1/74‑91 (MQ=255) cGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTa < 1:1036888/91‑1 (MQ=255) cGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTa > 1:1174467/1‑91 (MQ=255) gTCTTATATAGAAATGGTGCCAATTCACATCCAGTTTTCACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTaa > 2:33530/1‑90 (MQ=255) gTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTAt > 2:1706431/1‑91 (MQ=255) gTCATATATAGAAATGGTGACAATTCCCATAAAGTCTTAACTTTTGACGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTAt > 2:3143102/1‑91 (MQ=255) tCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATc > 1:3664006/1‑91 (MQ=255) tCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATc < 2:3168325/91‑1 (MQ=255) cTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCg > 2:1853144/1‑91 (MQ=255) cTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCg > 1:1482237/1‑91 (MQ=255) tatataGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGat < 1:2956805/91‑1 (MQ=255) atataGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATatcgatagaaaaa < 2:1127875‑M1/91‑14 (MQ=255) atataGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATa < 1:2038696‑M2/91‑2 (MQ=255) atataGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATa < 1:677444‑M2/91‑2 (MQ=255) tctttaacaacttcttttaattcaatcacgttgattcctccctgtgttgcttaataaaataaaaaaTGCTTTCTCAATTTTTCTATCGata > 1:3261280‑M1/67‑91 (MQ=255) tttaacaacttcttttaattcaatcacgttgattcctccctgtgttgcttaataaaataaaaaaTGCTTTCTCAATTTTTCTATCGATAtt > 1:2616751‑M1/65‑91 (MQ=255) taacaacttcttttaattcaatcacgttgattcctccctgtgttgcttaataaaagaaataaTGCTTTCTCAATTTTTCTATCGATATTga > 2:3453304‑M1/63‑91 (MQ=255) aaTGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATattgagaa < 2:3036126‑M2/91‑9 (MQ=255) aTGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATattgagaaa > 1:1838854‑M2/1‑82 (MQ=255) aTGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATattgagaaa > 1:2452385‑M2/1‑82 (MQ=255) aTGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATattgagaaa > 1:2173630‑M2/1‑82 (MQ=255) tGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATatcgatagaaaaattgagaaag < 2:2809779‑M1/91‑23 (MQ=255) tGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATattgagaaag > 2:128842‑M2/1‑81 (MQ=255) ggTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATattgagaaagc > 2:3948710‑M2/1‑80 (MQ=255) ggTGCCAATTCACATAAAGTTTTAACTTGTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATGTTGCTATCGATattgagaaagc > 2:1301457‑M2/1‑80 (MQ=255) gTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATattgagaaagca > 1:833955‑M2/1‑79 (MQ=255) cttcttttaattcaatcacgttgattcctccctgtgttgcttaataaaataaaaaaTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGc > 1:2753987‑M1/57‑91 (MQ=255) tGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAt < 1:1885240/91‑1 (MQ=255) ccAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAttt > 1:326395/1‑91 (MQ=255) ccAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAttt < 1:2305452/91‑1 (MQ=255) cAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAtttt > 2:1587413/1‑91 (MQ=255) aaTTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTTAATTTTTCTATCGATATTGAGATAGCAttttt < 2:2217537/91‑1 (MQ=255) aaTTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAttttt < 2:666116/91‑1 (MQ=255) aaTTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAttttt < 1:57562/91‑1 (MQ=255) aTTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAtttttt > 1:81314/1‑91 (MQ=255) ttCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTAATGCTTTCTCAATTTTTCTATCGATATTGAAAAAGCATTtttta > 1:3960530/1‑91 (MQ=255) cacaTAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTttttatt < 1:2490041/91‑1 (MQ=255) cacaTAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTttttatt > 2:2425733/1‑91 (MQ=255) caTAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTttttatttt < 2:1548892/91‑1 (MQ=255) aTAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTttttatttta > 1:1594173/1‑91 (MQ=255) aTAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTttttatttta > 1:1349504/1‑91 (MQ=255) tAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTtttattttat < 2:2258493/91‑1 (MQ=255) tAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTtttattttat > 2:1356935/1‑91 (MQ=255) aaGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACAAGTATTGCTTTCTAAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTttatta > 2:2767149/1‑91 (MQ=255) ttttAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGc < 1:1981596/91‑1 (MQ=255) tttAACTTTCGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAACTTTTCTATCGACATTGAGAAAGCATTTTTTCTTTTATTACGCa > 2:370654/1‑91 (MQ=255) aaCTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAaca < 2:1932190/91‑1 (MQ=255) aaCTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAaca > 1:2993219/1‑91 (MQ=255) aaCTTTAGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAaca > 1:3080002/1‑91 (MQ=255) cTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAAcaca < 2:2042778/91‑1 (MQ=255) cTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAAcaca < 1:3189280/91‑1 (MQ=255) tttGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAgg < 2:3746668/91‑1 (MQ=255) tGAAGATGAGAGAAA‑TAATACTACTGCTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGgga < 2:3419400/91‑1 (MQ=255) tGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGgga < 1:896954/91‑1 (MQ=255) aaGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGggagg > 2:8917/1‑91 (MQ=255) gATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGaa > 2:2886753/1‑91 (MQ=255) aTGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAAt > 1:278789/1‑91 (MQ=255) tGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATc > 1:3465765/1‑91 (MQ=255) tGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATAATGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATc > 2:3546049/1‑91 (MQ=255) gagaAAGCAATAGTAGTATTG‑TTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAAc > 1:790234/1‑91 (MQ=37) agaAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACg > 1:3642818/1‑91 (MQ=255) agaAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATGGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACg < 2:2199107/91‑1 (MQ=255) gaAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGCATCAACGt > 2:1079921/1‑91 (MQ=255) aaa‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTg > 1:3722839/1‑91 (MQ=255) aa‑CAATACTACTATTGCTTTCTCAATATTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATTAACGTGa < 2:3643409/91‑1 (MQ=255) agcAATAGTAGTATTG‑TTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGAt > 1:2542743/3‑91 (MQ=255) aaTACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTg > 2:2953646/1‑91 (MQ=255) aaTACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTg < 2:7601/91‑1 (MQ=255) aTACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGa > 2:1801599/1‑91 (MQ=255) tactacTATTGCTTTCTCAATTTTTCTATCGATattgagaaagcaatagtagtattgtttctctcatcttcaaaagttaaaactttatgtg < 1:2218613‑M2/91‑59 (MQ=255) ctactaTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAAtt > 1:3616889/1‑91 (MQ=255) actaTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTaa < 1:438477/91‑1 (MQ=255) actaTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTaa < 2:144024/91‑1 (MQ=255) actaTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTaa < 1:2195409/91‑1 (MQ=255) ctaTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTaaa > 1:2086759/1‑91 (MQ=255) aTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAGTTTTTATTTTAGTAAGCAACACACGGAGGAATCAACGTGATTGAATTAAaag < 2:3811715/91‑1 (MQ=255) TGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAaagaa < 2:1747293‑M1/91‑1 (MQ=255) TGCTTTCTCAATTTTTCTATCGACCTTGAGAAAGCATTTTTTATTTTAGTTAGCTACACAGGGAGGAATCAACGTGATTGAATTAAaagaa > 2:3680312‑M1/1‑91 (MQ=255) | CCTACGAAGCCCGGCAACCGTCTTATATAGAAATGGTGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAA > USA300TCH1516_ALE/893086‑893266 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |