BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	893176 =	178 (0.870)	15 (0.090)	9/136	NT	8.9%	intergenic (+177/‑73)	trxA_1/metN2	Thioredoxin/Methionine import ATP‑binding protein MetN 2
*	?	USA300TCH1516_ALE	893212 =	155 (0.900)	15 (0.090)	9/136	NT	8.9%	intergenic (+213/‑37)	trxA_1/metN2	Thioredoxin/Methionine import ATP‑binding protein MetN 2

Only 100 of 281 total aligned reads displayed.

TGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAAAGAAGTC  >  USA300TCH1516_ALE/893122‑893302

tGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAt                                                                                            >  2:3896691/1‑91 (MQ=255)

 gCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAtt                                                                                           >  1:2774935/1‑91 (MQ=255)

   cAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAtttt                                                                                         >  2:969820/1‑91 (MQ=255)

   cAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAtttt                                                                                         >  1:2847556/1‑91 (MQ=255)

   cAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAtttt                                                                                         <  2:2119899/91‑1 (MQ=255)

    aaTTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAttttt                                                                                        <  2:2215944/91‑1 (MQ=255)

    aaTTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAttttt                                                                                        <  1:57562/91‑1 (MQ=255)

      ttCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTtttta                                                                                      <  1:3305985/91‑1 (MQ=255)

       tCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTttttat                                                                                     >  2:2766995/1‑91 (MQ=255)

        cacaTAAAGTTTTAGCTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTttttatt                                                                                    <  2:550031/91‑1 (MQ=255)

        cacaTAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTttttatt                                                                                    <  1:2490238/91‑1 (MQ=255)

         acaTAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTttttattt                                                                                   >  2:1121129/1‑91 (MQ=255)

          caTAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTttttatttt                                                                                  <  2:1548892/91‑1 (MQ=255)

          caTAAAGTTGTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTttttatttt                                                                                  <  1:3782438/91‑1 (MQ=255)

           aTAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTttttatttta                                                                                 >  1:1349504/1‑91 (MQ=255)

           aTAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTttttatttta                                                                                 <  2:1746830/91‑1 (MQ=255)

            tAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTtttattttat                                                                                <  2:2258493/91‑1 (MQ=255)

             aaaGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTttattttatt                                                                               >  2:1386227/1‑91 (MQ=255)

              aaGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCCTTTTTTATTttatta                                                                              >  2:2767181/1‑91 (MQ=255)

                gTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAg                                                                            <  2:1358402/91‑1 (MQ=255)

                 ttttAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGc                                                                           <  1:2077855/91‑1 (MQ=255)

                 ttttAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGc                                                                           <  1:1981663/91‑1 (MQ=255)

                 ttttAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGc                                                                           <  1:1980973/91‑1 (MQ=255)

                 ttttAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGc                                                                           <  1:1607009/91‑1 (MQ=255)

                    tAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAac                                                                        >  2:1957239/1‑91 (MQ=255)

                    tAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAac                                                                        >  1:3234714/1‑91 (MQ=255)

                     aaCTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAaca                                                                       >  1:2994189/1‑91 (MQ=255)

                     aaCTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAaca                                                                       >  1:2993171/1‑91 (MQ=255)

                     aaCTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAaca                                                                       >  1:1168421/1‑91 (MQ=255)

                     aaCTTTAGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAaca                                                                       >  1:3080002/1‑91 (MQ=255)

                       cTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAAcaca                                                                     >  1:347172/1‑91 (MQ=255)

                        ttttGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAg                                                                    <  1:3092964/91‑1 (MQ=255)

                         tttGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTTTTATGCAACACAgg                                                                   >  2:1903082/1‑91 (MQ=255)

                         tttGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAgg                                                                   >  2:859543/1‑91 (MQ=255)

                         tttGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAgg                                                                   >  2:1423472/1‑91 (MQ=255)

                         tttGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAgg                                                                   <  2:3746668/91‑1 (MQ=255)

                           tGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGgga                                                                 <  1:896954/91‑1 (MQ=255)

                             aaGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGggagg                                                               >  2:7319/1‑91 (MQ=255)

                             aaGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGggagg                                                               <  1:3409673/91‑1 (MQ=255)

                               gATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGaa                                                             >  2:2886753/1‑91 (MQ=255)

                               gATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGaa                                                             >  2:3152655/1‑91 (MQ=255)

                                aTGAGAGAAA‑CAATACTACTATTGCTTTCTCTATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGAAAt                                                            >  2:3015112/1‑91 (MQ=255)

                                 tGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATc                                                           >  2:1290914/1‑91 (MQ=255)

                                    gagaAAGCAATAGTAGTATTG‑TTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAAc                                                        >  1:790321/1‑91 (MQ=37)

                                    gagaAAGCAATAGTAGTATTG‑TTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAAc                                                        >  1:790234/1‑91 (MQ=37)

                                      gaAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGCATCAACGt                                                      >  2:1079921/1‑91 (MQ=255)

                                      gaAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGt                                                      <  2:2651840/91‑1 (MQ=255)

                                         agcAATAGTAGTATTG‑TTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGAt                                                   >  1:2542743/3‑91 (MQ=255)

                                         a‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGAt                                                   <  1:3662562/91‑1 (MQ=255)

                                           cAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGAtt                                                  <  2:2383124/91‑1 (MQ=255)

                                               actactATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAAt                                              >  2:3601537/1‑91 (MQ=255)

                                               actactATTGCTTTCTCAATTATTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAAt                                              >  2:130889/1‑91 (MQ=255)

                                                ctactaTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAAtt                                             >  1:3623039/1‑91 (MQ=255)

                                                  actaTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTaa                                           <  2:3527673/91‑1 (MQ=255)

                                                  actaTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTaa                                           <  1:2195409/91‑1 (MQ=255)

                                                   ctaTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTaaa                                          >  1:2086759/1‑91 (MQ=255)

                                                    taTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTaaaa                                         <  2:1444570/91‑1 (MQ=255)

                                                     aTTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCAGTTTTTATTTTAGTAAGCAACACACGGAGGAATCAACGTGATTGAATTAAaag                                        <  2:3811715/91‑1 (MQ=255)

                                                       TGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAaagaa                                      >  1:2212777‑M1/1‑91 (MQ=255)

                                                       TGCTTTCTCAATTTTTCTATCGACCTTGAGAAAGCATTTTTTATTTTAGTTAGCTACACAGGGAGGAATCAACGTGATTGAATTAAaagaa                                      >  2:3680312‑M1/1‑91 (MQ=255)

                                                        gctttctcaatatcgatagaaaaattgagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAaagaag                                     >  1:2753987‑M2/36‑91 (MQ=255)

                                                           ttctcaatatcgatagaaaaattgagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAgttg                                  >  1:1565706‑M2/33‑91 (MQ=255)

                                                            TCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAgttgt                                 <  1:101753‑M1/91‑1 (MQ=255)

                                                             CTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAgttgtt                                <  2:3451503‑M1/91‑1 (MQ=255)

                                                               CAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTaa                              <  1:1545258‑M1/91‑1 (MQ=255)

                                                               CAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTaa                              >  2:2485712‑M1/1‑91 (MQ=255)

                                                               CAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTaa                              <  2:1741334‑M1/91‑1 (MQ=255)

                                                               CAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTaa                              <  1:1850553‑M1/91‑1 (MQ=255)

                                                               CAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTaa                              >  1:2340166‑M1/1‑91 (MQ=255)

                                                               CAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTaa                              <  2:1740111‑M1/91‑1 (MQ=255)

                                                                aatatcgatagaaaaattgagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTaaa                             >  1:2616751‑M2/28‑91 (MQ=255)

                                                                aatatcgatagaaaaattgagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTaaa                             >  1:3262401‑M2/28‑91 (MQ=255)

                                                                 ATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAg                            >  2:1755374‑M1/1‑91 (MQ=255)

                                                                  TTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGa                           >  1:3194486‑M1/1‑91 (MQ=255)

                                                                   ttttCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGaa                          >  1:1912935/1‑91 (MQ=255)

                                                                   atcgatagaaaaattgagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGaa                          >  1:1882367‑M2/25‑91 (MQ=255)

                                                                   atcgatagaaaaattgagaaagcaTTTTTTATTTTATTAAGCAACACAGCGCGGAATCAACGTGATTGCATTAAAAGAAGCTGTTAACGaa                          >  2:2556570‑M2/25‑91 (MQ=255)

                                                                    tttCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAat                         <  1:450936/91‑1 (MQ=255)

                                                                       cTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATc                      >  2:2293511/1‑91 (MQ=255)

                                                                        tATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCg                     >  1:2141197/1‑91 (MQ=255)

                                                                         agaaaaattgagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCgg                    >  1:1699489‑M2/19‑91 (MQ=255)

                                                                          tCGATATTGAGAAAGCATTTTTTTTTTTTTTTTTCAACACAGGGAGGAATCAACGTGTTTGAATTAAAAGAAGTTGTTAAAGAATATctgt                   >  2:2839310/1‑88 (MQ=255)

                                                                          tCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGa                   >  1:2372050/1‑91 (MQ=255)

                                                                           aaaaattgagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGAc                  >  1:1227131‑M2/17‑91 (MQ=255)

                                                                            gATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACt                 >  1:360503/1‑91 (MQ=255)

                                                                            gATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACt                 <  2:371712/91‑1 (MQ=255)

                                                                              tatTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTaa               >  1:3476143/1‑91 (MQ=255)

                                                                               attgagaaagcaTTTTTTATTTTATTAAGCAACGCAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTaaa              <  2:3296671‑M2/79‑1 (MQ=255)

                                                                               attgagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCTACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTaaa              <  2:1571127‑M2/79‑1 (MQ=255)

                                                                               attgagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTaaa              <  2:3835755‑M2/79‑1 (MQ=255)

                                                                               attgagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTaaa              <  1:1797008‑M2/79‑1 (MQ=255)

                                                                                  gagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAAt           >  1:370550‑M2/10‑91 (MQ=255)

                                                                                  gagaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAAt           >  2:811363‑M2/10‑91 (MQ=255)

                                                                                    gaaagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATaa         <  2:1584613‑M2/84‑1 (MQ=255)

                                                                                      aagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAaag       <  2:2440758‑M2/86‑1 (MQ=255)

                                                                                      aagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAaag       <  1:1320177‑M2/86‑1 (MQ=255)

                                                                                      aagcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAaag       >  1:2411678‑M2/6‑91 (MQ=255)

                                                                                        gcaTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAaagaa     >  2:1412165‑M2/4‑91 (MQ=255)

                                                                                         ggttttttATTTTAGTAAGCAACACAGGGAGGAATCGACGTGATTGAATTAAAAGAAGTTGTTAGAGAATATCGGACTAAAAATAaagaag    <  2:1020758/89‑1 (MQ=255)

                                                                                          aTTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAAAGAAGt   >  2:3926908‑M2/2‑91 (MQ=255)

TGCCAATTCACATAAAGTTTTAACTTTTGAAGATGAGAGAAA‑CAATACTACTATTGCTTTCTCAATTTTTCTATCGATATTGAGAAAGCATTTTTTATTTTATTAAGCAACACAGGGAGGAATCAACGTGATTGAATTAAAAGAAGTTGTTAAAGAATATCGGACTAAAAATAAAGAAGTC  >  USA300TCH1516_ALE/893122‑893302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.