| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 974266 | 195 (0.960) | 17 (0.100) | 8/136 | NT | 8.4% | intergenic (+109/‑438) | mrp/oatA_1 | Iron‑sulfur cluster carrier protein/O‑acetyltransferase OatA |
| ? | USA300TCH1516_ALE | = 974288 | 205 (1.190) | intergenic (+131/‑416) | mrp/oatA_1 | Iron‑sulfur cluster carrier protein/O‑acetyltransferase OatA | |||||
Only 100 of 328 total aligned reads displayed.
GTAGAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTC > USA300TCH1516_ALE/974176‑974356 | tAGAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAg > 2:2995464/1‑91 (MQ=255) aGAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGt > 2:1803406/1‑91 (MQ=255) gAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTa < 2:1947201/91‑1 (MQ=255) aaTTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAg > 2:3881393/1‑91 (MQ=255) tttCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGAc > 1:1132632/1‑91 (MQ=255) tttCATTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGAc < 1:3295829/91‑1 (MQ=255) tCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACAt < 1:801492/91‑1 (MQ=255) aaaagAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGa > 1:3026887/5‑91 (MQ=255) aaaTTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAAt > 2:1719464/1‑91 (MQ=255) aaTTCTCTGTGTTTTGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATg < 2:1013412/91‑1 (MQ=255) aTTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGa < 2:782157/91‑1 (MQ=255) ctctGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAattttcatttttcaatgtcta < 2:2970545‑M1/91‑22 (MQ=255) ctctGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGaaaa < 2:2298814/91‑1 (MQ=255) ctctGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGaaaa > 2:1052620/1‑91 (MQ=255) tctGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAAt > 2:2191976/1‑91 (MQ=255) tctGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAAt > 1:2293873/1‑91 (MQ=255) ctGGGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATGATTCATTGTGAATAA‑GCTCCCTTGAAAattttcagtgttcaatgtctact < 2:3816324‑M1/91‑24 (MQ=255) cTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATt < 2:1551552‑M2/91‑2 (MQ=255) tgtgTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAattttcatttttcaatgtctactt < 1:2243127‑M1/91‑25 (MQ=255) tgtgTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAattttcatttttcaatgtctactt < 1:429129‑M1/91‑25 (MQ=255) gtgtTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATttt > 1:2499256‑M2/1‑88 (MQ=255) gtgtTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATttt > 1:1185524‑M2/1‑88 (MQ=255) gtgtTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATttt < 2:676960‑M2/91‑4 (MQ=255) gtgtTTGGGCCCGCAATCGATATAACATAGTAGAGTATAATTCATTGTGAATAA‑GCACCCTTCAAAGTAGACATTGAAAAATGAAAATttt > 1:1593822‑M2/1‑88 (MQ=255) tGGGCCCGCAGTCCATATAACATTCTATCGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAATATGAAAAGtttgcagg < 2:3310883‑M2/91‑9 (MQ=255) gggCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATtttgaaggg < 1:2545817‑M2/91‑10 (MQ=255) gCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATtttgaagggag < 1:1454291‑M2/91‑12 (MQ=255) ccGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGcc < 2:1352098/91‑1 (MQ=255) cGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGGCTCCCTTCAAAattttcatttttcaatgtctactttgaagggagct < 2:877051‑M1/91‑36 (MQ=255) cGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCt < 2:928051/91‑1 (MQ=255) gCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATtttgaagggagtctt < 1:3561829‑M2/91‑16 (MQ=255) cAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttattta > 2:2383723/1‑91 (MQ=255) cAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttattta < 1:3672908/91‑1 (MQ=255) atatAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATg > 1:1722553/1‑91 (MQ=255) tataACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGt < 2:3240290/91‑1 (MQ=255) tataACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGt < 1:3612870/91‑1 (MQ=255) aaCATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCt < 2:3943570/91‑1 (MQ=255) aaCATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGAAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCt < 2:2578323/91‑1 (MQ=255) aTTGTACAGCATAATTCATTGTGAATAA‑GCACCCTTCAAAGTAGACATTGAAAAATGAACATTTTGAAGGGAGCCTTATCTATGTTCTCGt > 2:1032234/1‑91 (MQ=37) ttGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGtt < 2:2788467/91‑1 (MQ=255) tGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGttt > 1:3770968/1‑91 (MQ=255) tAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTAAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCt < 2:500856/91‑1 (MQ=255) gagTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGa > 2:459456/1‑91 (MQ=255) agTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGat > 1:3914905/1‑91 (MQ=255) gataATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGattt < 1:3405394/90‑1 (MQ=255) ttCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGattttattt > 1:2605532/1‑91 (MQ=255) ttCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGattttattt > 1:1899701/1‑91 (MQ=255) tCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGattttatttt < 2:1649766/91‑1 (MQ=255) cgttGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTg > 2:2256046/3‑91 (MQ=255) cATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTg < 2:146119/91‑1 (MQ=255) cATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTg < 1:3095235/91‑1 (MQ=255) caatgAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGaa > 1:3719263/4‑91 (MQ=255) tgtgAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGaaa > 1:725450/1‑91 (MQ=255) tgtgAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGaaa > 1:3464509/1‑91 (MQ=255) gtgAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGaaaa > 2:2613669/1‑91 (MQ=255) tgAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATtttgaagggagcttattcacaatgaattatactctacaatgttatattga < 1:283260‑M2/91‑51 (MQ=255) tgAATAA‑GCTCCCTTCAAAGTAGACAGTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAAt > 2:2236804/1‑91 (MQ=255) gAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAAtt < 1:1538287/91‑1 (MQ=255) gAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAAtt > 1:124485/1‑91 (MQ=255) aTAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTta > 2:1830414/1‑91 (MQ=255) tAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGATGGGAGCATTATTTCTGTTCTAGTTTCTGATTTTTTTTTGAACATTtat > 2:3484077/1‑91 (MQ=25) tAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTtat > 2:72744/1‑91 (MQ=255) tAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTtat < 1:593598/91‑1 (MQ=255) aa‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTtata > 2:3468448/1‑91 (MQ=255) a‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTatat > 1:116560/1‑91 (MQ=255) a‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTatat > 1:2736530/1‑91 (MQ=255) gCTCCCTTCAAAattttcatttttcaatgtctactttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcggg < 2:3732940‑M1/91‑80 (MQ=255) gCTCCCTTCAAAattttcatttttcaatgtctactttgaagggagcttattcacaatgaattatactctacaatgttatattgaccgcggg < 1:2408740‑M1/91‑80 (MQ=255) gCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATc < 2:2261748/91‑1 (MQ=255) gCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATc < 1:891020/91‑1 (MQ=255) gCTCCCTTCAAACTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATc < 2:596782/91‑1 (MQ=255) cTCCCTTCAAAattttcatttttcaatgtctactttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggc < 2:3095319‑M1/91‑81 (MQ=255) cTCCCTTCAAAGTAGACATTGAAAAATGAAAATtttgaagggagccttattcaccatgaattatactctacaatgttatattgactgcggg < 2:3114834‑M2/91‑59 (MQ=255) cTCCCTTCAAAGTAGACATTGAAAAATGAAAATtttgaagggagccttattcacaatgaattatactctacaatgttatattgactgcggg < 2:483580‑M2/91‑59 (MQ=255) tCCCTTCAAAattttcatttttcaatgtctactttgaagggagcttcttcacaatgaattatactctacaatgttatattgactgcgggcc > 1:3130240‑M1/1‑10 (MQ=255) tCCCTTCAAAattttcatttttcaatgtctactttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggcc < 1:3216984‑M1/91‑82 (MQ=255) tCCCTTCAAAattttcatttttcaatgtctactttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggcc > 1:44675‑M1/1‑10 (MQ=255) tCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTa > 2:2060235/1‑91 (MQ=255) tCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTa > 1:1799216/1‑91 (MQ=255) tCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTa > 2:115414/1‑91 (MQ=255) cccTTCAAAattttcatttttcaatgtctactttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggccc < 2:558337‑M1/91‑83 (MQ=255) ccTTCAAAattttcatttttcaatgtctactttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggccca < 1:2034124‑M1/91‑84 (MQ=255) ccTTCAAAattttcatttttcaatgtctactttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggccca < 2:1252565‑M1/91‑84 (MQ=255) ccTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAAc > 2:2135030/1‑91 (MQ=255) cTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACt < 1:120722/91‑1 (MQ=255) ttCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACtt < 1:237234/91‑1 (MQ=255) tCAAAGTAGACATTGAAAAATGAAAATtttgaagggagccttattcacaatgaattatactctacaatgttatattgactgcgggcccaaa < 2:3604017‑M2/91‑65 (MQ=255) tCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTg < 1:3841290/91‑1 (MQ=255) cAAAattttcatttttcaatgtctactttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggcccaaaca < 1:2011119‑M1/91‑88 (MQ=255) cAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGt < 1:2653670/91‑1 (MQ=255) cAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGt < 1:247570/91‑1 (MQ=255) cAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTAGAAAATTTATATCTAACTTGt < 1:1345138/91‑1 (MQ=255) aaaattttcatttttcaatgtctactttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggcccaaacac > 1:631939‑M1/1‑3 (MQ=255) aaaattttcatttttcaatgtctactttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggcccaaacac > 2:2892872‑M1/1‑3 (MQ=255) aaaattttcatttttcaatgtctactttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggcccaaacac > 2:3165253‑M1/1‑3 (MQ=255) aaaGTAGACATTGAACACGGAAAATTTTGAAGGGAGCCTTCTTTATGTTCGAGTTTCTGGTTTCATTTTGAATATGTCTATCTAACTTGtt > 2:2909517/1‑91 (MQ=255) aaaGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGtt < 1:1848916/91‑1 (MQ=255) aattttcatttttcaatgtctactttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggcccaaatacag < 1:3125219‑M1/91‑91 (MQ=255) aattttcatttttcaatgtctactttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggcccaaacacag < 2:1551356‑M1/91‑91 (MQ=255) aGTAGACATTGAAAAATGAAAATtttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggcccaaacacag < 2:1047578‑M2/91‑69 (MQ=255) | GTAGAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAA‑GCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTC > USA300TCH1516_ALE/974176‑974356 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |