BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 974266	195 (0.960)	17 (0.100)	8/136	NT	8.4%	intergenic (+109/‑438)	mrp/oatA_1	Iron‑sulfur cluster carrier protein/O‑acetyltransferase OatA
*	?	USA300TCH1516_ALE	= 974288	205 (1.190)	17 (0.100)	8/136	NT	8.4%	intergenic (+131/‑416)	mrp/oatA_1	Iron‑sulfur cluster carrier protein/O‑acetyltransferase OatA

Only 100 of 295 total aligned reads displayed.

TCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAATATGAATTAAGACAGT  >  USA300TCH1516_ALE/974198‑974378

 cTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATt                                                                                           <  2:1551552‑M2/91‑2 (MQ=255)

   gtgtTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATttt                                                                                         >  1:3853658‑M2/1‑88 (MQ=255)

   gtgtTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATttt                                                                                         >  1:2499256‑M2/1‑88 (MQ=255)

   gtgtTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATttt                                                                                         >  2:2892872‑M2/1‑88 (MQ=255)

    tgtTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATtttg                                                                                        <  1:2011119‑M2/91‑5 (MQ=255)

          ggCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATtttgaaggga                                                                                  >  1:3130020‑M2/1‑81 (MQ=255)

           gCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATtttgaagggag                                                                                 <  2:3095319‑M2/91‑12 (MQ=255)

            cccGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATtttgaagggagc                                                                                <  2:3732940‑M2/91‑13 (MQ=255)

             ccGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGcc                                                                               >  1:2453989/1‑91 (MQ=255)

              cGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCt                                                                              <  2:928051/91‑1 (MQ=255)

                 aGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttat                                                                           <  2:213590/91‑1 (MQ=255)

                  gTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttatt                                                                          <  1:2661880/91‑1 (MQ=255)

                    cAATATAACATTGTAGAGTATAATTGATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttattta                                                                        <  1:3672897/91‑1 (MQ=255)

                    cAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttattta                                                                        >  1:2607335/1‑91 (MQ=255)

                    cAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttattta                                                                        <  2:19375/91‑1 (MQ=255)

                    cAATAGAACATTGTAGAGTATAATTTATTGTGAATAAGCGCCCTTCAAAGTAGGCATTGAAAAATGAAAATTTTGAAGGGAGCCttattta                                                                        <  1:3678279/91‑1 (MQ=255)

                     aaTATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttatttat                                                                       <  2:1023748/91‑1 (MQ=255)

                     aaTATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttatttat                                                                       >  2:3452973/1‑91 (MQ=255)

                     aaTATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttatttat                                                                       >  1:2285797/1‑91 (MQ=255)

                     aaTATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCttatttat                                                                       >  1:1415444/1‑91 (MQ=255)

                      atatAACATTGTAGGGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGCCATTGAAAAATGAAAATTTTGAAGCGAGCCTTATTTATg                                                                      >  2:2590362/1‑91 (MQ=255)

                      atatAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATg                                                                      >  2:2482126/1‑91 (MQ=255)

                       tgtaACATTGTAGAGTATAATTAATTGTGGATAAGGTCCCGTCAAAGTAGACATAAAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGt                                                                     <  2:3608336/89‑1 (MQ=255)

                       tataACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGt                                                                     <  2:3240290/91‑1 (MQ=255)

                       tataACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGt                                                                     <  2:781555/91‑1 (MQ=255)

                          aaCATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCt                                                                  <  2:1680717/91‑1 (MQ=255)

                          aaCATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCt                                                                  <  2:3943570/91‑1 (MQ=255)

                          aaCATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCt                                                                  >  1:3593157/1‑91 (MQ=255)

                             aTTGTACAGCATAATTCATTGTGAATAAGCACCCTTCAAAGTAGACATTGAAAAATGAACATTTTGAAGGGAGCCTTATCTATGTTCTCGt                                                               >  2:1032234/1‑91 (MQ=37)

                               tGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGttt                                                             >  1:3770968/1‑91 (MQ=255)

                                   gagTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGa                                                         >  2:2328413/1‑91 (MQ=255)

                                    agTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGat                                                        >  1:640363/1‑91 (MQ=255)

                                      tataATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGattt                                                      >  2:843788/1‑91 (MQ=255)

                                      gataATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGattt                                                      <  1:3405394/90‑1 (MQ=255)

                                        taATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGatttta                                                    >  2:3064223/1‑91 (MQ=255)

                                         aaTTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGattttat                                                   >  1:1558757/1‑91 (MQ=255)

                                          aTTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGattttatt                                                  <  2:966021/91‑1 (MQ=255)

                                           ttCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGattttattt                                                 >  1:1899701/1‑91 (MQ=255)

                                           ttCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGattttattt                                                 <  2:2120927/91‑1 (MQ=255)

                                            tCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGattttatttt                                                >  1:3415007/1‑91 (MQ=255)

                                             cATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTg                                               >  2:2256144/1‑91 (MQ=255)

                                             cATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTg                                               <  2:146119/91‑1 (MQ=255)

                                             cATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTg                                               <  1:3095235/91‑1 (MQ=255)

                                               caatgAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGaa                                             >  1:3719263/4‑91 (MQ=255)

                                                tgtgAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGaaa                                            >  1:725450/1‑91 (MQ=255)

                                                 gtgAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGaaaa                                           >  2:2613669/1‑91 (MQ=255)

                                                 gtgAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGaaaa                                           <  1:591078/91‑1 (MQ=255)

                                                  tgAATAAGCTCCCTTCAAAGTAGACAGTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAAt                                          >  2:2236804/1‑91 (MQ=255)

                                                     aTAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTta                                       >  2:1829995/1‑91 (MQ=255)

                                                      tAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCGTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTtat                                      >  2:3483883/1‑91 (MQ=255)

                                                      tAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTtat                                      >  2:72744/1‑91 (MQ=255)

                                                      tAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTtat                                      <  1:593729/91‑1 (MQ=255)

                                                        aGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTatat                                    >  1:116560/1‑91 (MQ=255)

                                                         gCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATc                                   <  1:891020/91‑1 (MQ=255)

                                                         gCTCCCTTCAAACTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATc                                   <  2:596782/91‑1 (MQ=255)

                                                          cTCCCTTCAAAGTAGACATTGAAATATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCt                                  >  2:484335/1‑91 (MQ=255)

                                                           tCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTa                                 >  1:1799216/1‑91 (MQ=255)

                                                           tCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTa                                 >  2:3141784/1‑91 (MQ=255)

                                                           tCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTa                                 >  2:2282212/1‑91 (MQ=255)

                                                           tCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTa                                 >  2:2060235/1‑91 (MQ=255)

                                                           tCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTa                                 >  2:115414/1‑91 (MQ=255)

                                                                tCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTg                            <  2:2924297/91‑1 (MQ=255)

                                                                  aaaGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGtt                          <  1:1848916/91‑1 (MQ=255)

                                                                  aaaGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGtt                          >  1:2048077/1‑91 (MQ=255)

                                                                   aaGTAGACATTGAAAAATGAAAATtttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggcccaaacaca                         <  1:429129‑M2/91‑68 (MQ=255)

                                                                   aaGTAGACATTGAAAAATGAAAATtttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggcccaaacaca                         <  1:2243127‑M2/91‑68 (MQ=255)

                                                                    aGTAGACATTGAACACTGAAAATtttcaagggagcttattcacaatgaatcatactctacaatgttatattgactgcgggcccaaacccag                        <  2:3816324‑M2/91‑69 (MQ=255)

                                                                    aGTAGACATTGAAAAATGAAAATtttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggcccaaacacag                        <  2:1047605‑M2/91‑69 (MQ=255)

                                                                    aGTAGACATTGAAAAATGAAAATtttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggcccaaacacag                        <  1:1205961‑M2/91‑69 (MQ=255)

                                                                    aGTAGACATTGAAAAATGAAAATtttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggcccaaacacag                        <  1:2584485‑M2/91‑69 (MQ=255)

                                                                     gTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCa                       <  1:3928933/91‑1 (MQ=255)

                                                                     gTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCa                       >  2:1294688/1‑91 (MQ=255)

                                                                      tAGACATTGAAAAATGAAAATtttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggcccaaacacagag                      <  1:2821684‑M2/91‑71 (MQ=255)

                                                                      tAGACATTGAAAAATGAAAATtttgaagggagcttattcacaatgaattatactctacaatgttatattgactgcgggcccaaacacagag                      <  2:2970545‑M2/91‑71 (MQ=255)

                                                                       aGACATTGAAAAATGAAAATCTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCaaa                     >  2:2144190/1‑91 (MQ=255)

                                                                        gACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCaaaa                    >  2:3522878/1‑91 (MQ=255)

                                                                        gACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCaaaa                    <  2:695530/91‑1 (MQ=255)

                                                                        gACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCaaaa                    <  1:79805/91‑1 (MQ=255)

                                                                        gACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCaaaa                    >  2:4800/1‑91 (MQ=255)

                                                                           aTTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAat                 <  2:542598/91‑1 (MQ=255)

                                                                           aTTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAat                 >  2:1264581/1‑91 (MQ=255)

                                                                           aTTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAat                 <  1:3257978/91‑1 (MQ=255)

                                                                            ttGAAAAATGAAAATTTTGAATTTATCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAata                >  2:2260182/1‑91 (MQ=255)

                                                                            ttGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAata                >  1:2716385/1‑91 (MQ=255)

                                                                             tGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAatat               <  1:3469774/91‑1 (MQ=255)

                                                                               aaaaaTGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAATATGa             <  1:1153052/91‑1 (MQ=255)

                                                                               aaaaaTGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAATATGa             >  1:2950006/1‑91 (MQ=255)

                                                                                 aaaTGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAATATGAAt           <  1:13122/91‑1 (MQ=255)

                                                                                  aaTGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAATATGAAtt          >  1:1236386/1‑91 (MQ=255)

                                                                                  aaTGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAATATGAAtt          >  2:3344278/1‑91 (MQ=255)

                                                                                   aTGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAATATGAATTa         >  1:2402570/1‑91 (MQ=255)

                                                                                    tGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAATATGAATTaa        >  2:2375753/1‑91 (MQ=255)

                                                                                    tGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAATATGAATTaa        <  2:2705020/91‑1 (MQ=255)

                                                                                     gAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAATATGAATTAAg       >  2:1390320/1‑91 (MQ=255)

                                                                                     gAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAATATGAATTAAg       >  2:453671/1‑91 (MQ=255)

                                                                                      aaaaTTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAATATGAATTAAGa      >  1:1015824/1‑91 (MQ=255)

                                                                                        aaTTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAATATGAATTAAGACa    >  2:1638195/1‑91 (MQ=255)

                                                                                        aaTTTCGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAATATGAATTAAGACa    <  2:3634572/91‑1 (MQ=255)

                                                                                          ttttGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAATATGAATTAAGACAGt  >  1:2324937/1‑91 (MQ=255)

                                                                                          ttttGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAATATGAATTAAGACAGt  >  1:1731002/1‑91 (MQ=255)

TCTGTGTTTGGGCCCGCAGTCAATATAACATTGTAGAGTATAATTCATTGTGAATAAGCTCCCTTCAAAGTAGACATTGAAAAATGAAAATTTTGAAGGGAGCCTTATTTATGTTCTAGTTTCTGATTTTATTTTGAAAATTTATATCTAACTTGTTTCAAAAAATATGAATTAAGACAGT  >  USA300TCH1516_ALE/974198‑974378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.