| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1036825 | 238 (1.170) | 11 (0.060) | 5/140 | NT | 5.0% | intergenic (+755/‑589) | USA300TCH1516_00963/USA300TCH1516_00964 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1036842 | 210 (1.180) | intergenic (+772/‑572) | USA300TCH1516_00963/USA300TCH1516_00964 | hypothetical protein/hypothetical protein | |||||
Only 100 of 379 total aligned reads displayed.
TGAATATGTAATGAAGTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCATA > USA300TCH1516_ALE/1036735‑1036915 | gAATATGTAATGAAGTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCAttt < 2:1049300/91‑1 (MQ=255) gAATATGTAATGAAGTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCAttt > 2:3938941/1‑91 (MQ=255) gAATATGTAATGAAGTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCAttt > 1:1750135/1‑91 (MQ=255) atatGTAATGAAGTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTcc > 1:3001385/1‑91 (MQ=255) atatGTAATGAAGTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTcc < 1:1343023/91‑1 (MQ=255) tatGTAATGAAGTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCa < 2:646804/91‑1 (MQ=255) tGTAATGAAGTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCaaa > 1:3893054/1‑91 (MQ=255) tGTAATGAAGTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCaaa < 1:2291899/91‑1 (MQ=255) tGTAATGAAGTTCAGATATTAAGATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCaaa < 2:3190554/91‑1 (MQ=255) gTAATGAAGTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAAc < 2:925361/91‑1 (MQ=255) gaaTGAAGTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAAGTTAAACAATAAAAAACAACCATCATTTCCAAACt < 2:584134/90‑1 (MQ=255) aTGAAGTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTATTTTAAACAATAAAAAACAACCATCATTTCCAAACttt < 1:3345948/91‑1 (MQ=255) aTGAAGTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACttt < 1:1402537/91‑1 (MQ=255) tGAAGTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTg > 1:121815/1‑91 (MQ=255) tGAAGTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTg > 2:2372108/1‑91 (MQ=255) aGTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACa > 2:179174/1‑91 (MQ=255) gTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACaa > 1:951861/1‑91 (MQ=255) gTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACaa > 2:1157648/1‑91 (MQ=255) tCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACg < 2:539356/91‑1 (MQ=255) tCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACg < 1:308810/91‑1 (MQ=255) tCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTCAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACg < 1:3429289/91‑1 (MQ=255) cATATTTTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGa > 2:3649430‑M2/1‑90 (MQ=255) cATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGa > 2:3284704‑M2/1‑90 (MQ=255) atatatTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGaa > 1:3102458‑M2/1‑89 (MQ=255) tatatTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTcgttgtcaaagtttggaaat < 1:2721926‑M1/91‑21 (MQ=255) atatTAATATAACTTGCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGaatg > 2:1258050‑M2/1‑87 (MQ=255) ttAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCACACTTTGACAACGaatgatg < 1:2722725‑M2/91‑8 (MQ=255) ttAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGaatgatg < 2:2264884‑M2/91‑8 (MQ=255) tAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGaatgatgg > 1:422598‑M2/1‑83 (MQ=255) aaTATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGaatgatggt < 1:2659318‑M2/91‑10 (MQ=255) atatAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGaatgatggtt > 1:1804234‑M2/1‑81 (MQ=255) atatAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGaatgatggtt < 1:957839‑M2/91‑11 (MQ=255) tataACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTa < 2:1018147/91‑1 (MQ=255) ataACTTGCATTGATAGAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTaa < 1:1894599/91‑1 (MQ=255) taACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTaaa < 1:2368529/91‑1 (MQ=255) aaCTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAg < 1:2322015/91‑1 (MQ=255) aaCTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAg > 1:398164/1‑91 (MQ=255) aaCTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAg < 1:3803390/91‑1 (MQ=255) tCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAAt < 1:1528159/91‑1 (MQ=255) ttGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAAtctc > 1:3748692/1‑91 (MQ=255) tGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAAtctc > 1:1969178/1‑90 (MQ=255) ataGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTa < 1:930142/91‑1 (MQ=255) taGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAg > 1:3249898/1‑91 (MQ=255) aaGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCa < 1:627442/91‑1 (MQ=255) aGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCAc < 1:756360/91‑1 (MQ=255) gTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCAcc < 1:2235454/91‑1 (MQ=255) tCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCg > 1:701485/1‑91 (MQ=255) cGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGt < 2:3468819/91‑1 (MQ=255) gCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTc > 2:375628/1‑91 (MQ=255) cAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCt > 1:1593371/1‑91 (MQ=255) aTGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCttt < 1:2107784/91‑1 (MQ=255) tGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCtttt > 2:786087/1‑91 (MQ=255) tGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCtttt > 2:476059/1‑91 (MQ=255) cataaaTTTAAACAATAAAAAATAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCttttt < 2:3922634/87‑1 (MQ=255) aaTTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACg > 1:1937518/1‑91 (MQ=255) aTTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACgg > 2:2191616/1‑91 (MQ=255) aTTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACgg < 2:26071/91‑1 (MQ=255) tttAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACggg < 2:2827897/91‑1 (MQ=255) ttAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGc < 2:3739038/91‑1 (MQ=255) aaaCAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTc < 1:2462580/91‑1 (MQ=255) aaCAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCa > 1:2769325/1‑91 (MQ=255) aaCAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCa > 2:3846066/1‑91 (MQ=255) aaCAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCa > 1:518726/1‑91 (MQ=255) aCAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCaa > 1:2548754/1‑91 (MQ=255) cAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAAt > 1:1864503/1‑91 (MQ=255) aaTAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATa > 1:3498810/1‑91 (MQ=255) aTAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAg > 2:1891051/1‑91 (MQ=255) tAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAgg > 1:2622522/1‑91 (MQ=255) tAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAgg > 1:1059403/1‑91 (MQ=255) aaaaaaCAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTATCGTGTTCAATAGGc > 2:3327016/1‑91 (MQ=255) aaaaaCAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCg < 2:246586/91‑1 (MQ=255) aaaaCAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGa < 1:835837/91‑1 (MQ=255) aaaCAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGAc < 2:1982043/91‑1 (MQ=255) aaaCAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGAc < 2:2535653/91‑1 (MQ=255) aaaCAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGAc < 1:1656506/91‑1 (MQ=255) aaaCAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGCCGAc > 2:1435625/1‑91 (MQ=255) aacaacCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACa > 2:1572710/1‑91 (MQ=255) aacaacCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACa > 2:1683986/1‑91 (MQ=255) caacCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATg > 1:3101681/1‑91 (MQ=255) aacCATCATTTCCAAACTTTGACAACGaatgatggttgttttttattgtttaaattaatcattgcgacttctatatcaatgaaagttatat < 2:1722698‑M2/91‑65 (MQ=255) acCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGtt > 1:1282325/1‑91 (MQ=255) catcatTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTcc > 2:3399802/1‑91 (MQ=255) atcatTTCCAAACTTTGACAACGaatgatggatgttttttattgtttaaattaatcattgcgacttctatatcaatgaaagttatattaaa < 2:2995604‑M2/91‑69 (MQ=255) atcatTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCt < 2:827145/91‑1 (MQ=255) atcatTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCt > 2:854599/1‑91 (MQ=255) atcatTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCt > 1:2168310/1‑91 (MQ=255) tcatTcgttgtcaaagtttggaaatgatggttgttttttattgtttaaattaatcattgcgacttctatatcaatgtaagttatattaata > 1:1324179‑M1/1‑5 (MQ=255) tcatTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTg < 1:1112331/91‑1 (MQ=255) catTcgttgtcaaagtttggaaatgatggttgttttttattgtttaaattcatcattgcgacttctatatcaatgaaagttctattaatat > 2:1257990‑M1/1‑4 (MQ=255) catTcgttgtcaaagtttggaaatgatggttgttttttattgtttaaattaatcattgcgacttctatatcaatgaaagttatattaatat > 1:2275274‑M1/1‑4 (MQ=255) catTcgttgtcaaagtttggaaatgatggttgtttattattgtttaaattaatcattgcgacttctatatcaatgaaagttatattaatat < 2:3862887‑M1/91‑88 (MQ=255) catTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGc > 2:2095926/1‑91 (MQ=255) ttcgttgtcaaagtttggaaatgatggttgttttttattgtttaaattaatcattgcgacttctatatcaatgaaagttatattaatatat < 2:1297690‑M1/91‑90 (MQ=255) ttcgttgtcaaagtttggaaatgatggttgttttttattgtttaaattaatcattgcgacttctatatcaatgaaagttatattaatatat < 2:2837243‑M1/91‑90 (MQ=255) ttCCAAACTTTGACACCGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCata < 1:179174/91‑1 (MQ=255) ttCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCGTTTTAACGGGCTCAATAGGCGACATGTTCCTGCata > 2:3123611/1‑91 (MQ=255) tcgttgtcaaagtttggaaatgatggttgttttttattgtttaaattaatcattgcgacttctatatcaatgaaagttatattaatatatg < 1:2862018‑M1/91‑91 (MQ=255) tcgttgtcaaagtttggaaatgatggttgttttttattgtttaaattaatcattgcgacttctatatcaatgaaagttatattaatatatg > 1:3611753‑M1/1‑1 (MQ=255) tcgttgtcaaagtttggaaatgatggttgttttttattgtttaaattaatcattgcgacttctatatcaatgaaagttatattaatatatg < 2:2971025‑M1/91‑91 (MQ=255) tcgttgtcaaagtttggaaatgatggttgttttttattgtttaaattaatcattgcgacttctatatcaatgaaagttatattaatatatg < 2:2906744‑M1/91‑91 (MQ=255) | TGAATATGTAATGAAGTTCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCATA > USA300TCH1516_ALE/1036735‑1036915 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |