BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1036825	238 (1.170)	11 (0.060)	5/140	NT	5.0%	intergenic (+755/‑589)	USA300TCH1516_00963/USA300TCH1516_00964	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 1036842	210 (1.180)	11 (0.060)	5/140	NT	5.0%	intergenic (+772/‑572)	USA300TCH1516_00963/USA300TCH1516_00964	hypothetical protein/hypothetical protein

Only 100 of 305 total aligned reads displayed.

TCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCATATCGTCTATTTATACACT  >  USA300TCH1516_ALE/1036752‑1036932

tCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACg                                                                                            <  1:308810/91‑1 (MQ=255)

tCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACg                                                                                            <  2:539356/91‑1 (MQ=255)

 cATATTTTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGa                                                                                           >  2:3649430‑M2/1‑90 (MQ=255)

 cATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGa                                                                                           >  1:1084799‑M2/1‑90 (MQ=255)

 cATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGa                                                                                           >  1:3611753‑M2/1‑90 (MQ=255)

 cATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGa                                                                                           <  1:2862018‑M2/91‑2 (MQ=255)

 cATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGa                                                                                           <  2:2971025‑M2/91‑2 (MQ=255)

  atatatTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGaa                                                                                          <  2:1297690‑M2/91‑3 (MQ=255)

   tatatTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGaat                                                                                         <  2:3301308‑M2/91‑4 (MQ=255)

   tatatTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGaaa                                                                                         <  2:3939019‑M2/91‑4 (MQ=255)

    atatTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAATAAACAACCATCATTTCCAAACTTTGACAACGaatg                                                                                        <  2:3862887‑M2/91‑5 (MQ=255)

    atatTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGaatg                                                                                        >  1:2275274‑M2/1‑87 (MQ=255)

    atatTAATATAACTTGCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGaatg                                                                                        >  2:1258050‑M2/1‑87 (MQ=255)

       ttAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGaatgatg                                                                                     <  2:2264884‑M2/91‑8 (MQ=255)

         aaTATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGaatgatggt                                                                                   <  2:3144853‑M2/91‑10 (MQ=255)

         aaTATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGaatgatggt                                                                                   <  1:2659318‑M2/91‑10 (MQ=255)

          atatAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGaatgatggtt                                                                                  >  1:1804234‑M2/1‑81 (MQ=255)

            ataACTTGCATTGATAGAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTaa                                                                                <  1:1894599/91‑1 (MQ=255)

             taACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTaaa                                                                               <  1:2368529/91‑1 (MQ=255)

              aaCTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAg                                                                              <  1:3803390/91‑1 (MQ=255)

              aaCTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAg                                                                              <  1:2322015/91‑1 (MQ=255)

               aCTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGa                                                                             <  1:2504860/91‑1 (MQ=255)

                cTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGaa                                                                            <  2:1549419/91‑1 (MQ=255)

                 tttCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGaaa                                                                           <  1:1817183/91‑1 (MQ=255)

                  ttCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGaaaa                                                                          <  2:854747/91‑1 (MQ=255)

                  ttCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGaaaa                                                                          >  2:843829/1‑91 (MQ=255)

                   tCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAAt                                                                         >  1:1436385/1‑91 (MQ=255)

                       tGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCa                                                                     <  1:2889094/91‑1 (MQ=255)

                          tataGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAACGAAACTCTCAttt                                                                  >  2:282819/1‑91 (MQ=255)

                              gAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTc                                                              >  2:3436261/1‑91 (MQ=255)

                              gAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTc                                                              <  2:581956/91‑1 (MQ=255)

                              gAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTc                                                              <  2:1797220/91‑1 (MQ=255)

                              gAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTc                                                              <  2:1192790/91‑1 (MQ=255)

                              gAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTc                                                              <  1:1954381/91‑1 (MQ=255)

                                aGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCAc                                                            <  1:756360/91‑1 (MQ=255)

                                aGTCGCAATGATAAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCAc                                                            >  1:3041176/1‑91 (MQ=255)

                                 gTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCAcc                                                           <  1:2235454/91‑1 (MQ=255)

                                  tCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCg                                                          >  1:701485/1‑91 (MQ=255)

                                  tCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCg                                                          >  2:2466953/1‑91 (MQ=255)

                                   cGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGt                                                         >  2:2840066/1‑91 (MQ=255)

                                   cGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGt                                                         <  1:3163404/91‑1 (MQ=255)

                                     cAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCt                                                       >  1:1593371/1‑91 (MQ=255)

                                     cAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCt                                                       >  1:3321920/1‑91 (MQ=255)

                                       aTGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCttt                                                     <  1:2107784/91‑1 (MQ=255)

                                        tGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCtttt                                                    >  2:476059/1‑91 (MQ=255)

                                        tGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCtttt                                                    >  2:786087/1‑91 (MQ=255)

                                        tGAATAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACAGTCtttt                                                    >  2:3507459/1‑91 (MQ=255)

                                         gATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGTTGGTTAAAGAAAATCTCATTTAGTCACCGTCttttt                                                   >  1:473227/1‑91 (MQ=255)

                                           ttAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTaa                                                 >  1:606646/1‑91 (MQ=255)

                                            tAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAAc                                                <  2:1115145/91‑1 (MQ=255)

                                             aaTTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGATTGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACg                                               >  1:3949832/1‑91 (MQ=255)

                                             aaTTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACg                                               >  1:1937518/1‑91 (MQ=255)

                                              aTTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACgg                                              <  2:26071/91‑1 (MQ=255)

                                                ttAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGc                                            <  2:3739038/91‑1 (MQ=255)

                                                   aaCAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCa                                         >  1:518726/1‑91 (MQ=255)

                                                   aaCAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCa                                         >  2:3846066/1‑91 (MQ=255)

                                                   aaCAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCa                                         >  1:405769/1‑91 (MQ=255)

                                                   aaCAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCa                                         >  1:862587/1‑91 (MQ=255)

                                                     cAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAAt                                       >  1:1864503/1‑91 (MQ=255)

                                                      aaTAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATa                                      <  2:256355/91‑1 (MQ=255)

                                                      aaTAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATa                                      >  1:3498810/1‑91 (MQ=255)

                                                       aTAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAg                                     >  1:1753876/1‑91 (MQ=255)

                                                       aTAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAg                                     >  1:2519084/1‑91 (MQ=255)

                                                       aTAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAg                                     >  2:267783/1‑91 (MQ=255)

                                                        tAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAgg                                    >  1:1338548/1‑91 (MQ=255)

                                                        tAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAgg                                    >  1:1269390/1‑91 (MQ=255)

                                                        tAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAgg                                    >  1:1652393/1‑91 (MQ=255)

                                                           aaaaCAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGa                                 >  2:1745527/1‑91 (MQ=255)

                                                            aaaCAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGAc                                <  1:932548/91‑1 (MQ=255)

                                                            aaaCAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGAc                                <  2:1982043/91‑1 (MQ=255)

                                                            aaaCAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGAc                                >  1:1121056/1‑91 (MQ=255)

                                                            aaaCAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGCCGAc                                >  2:1435625/1‑91 (MQ=255)

                                                             aacaacCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACa                               <  1:377275/91‑1 (MQ=255)

                                                               caacCATCATTTCCAAACTTTGACAACGaatgatggttgttttttattgtttaaattaatcattgcgacttctatatcaatgaaagttata                             <  1:2599663‑M2/91‑64 (MQ=255)

                                                               caacCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATg                             >  1:826589/1‑91 (MQ=255)

                                                               caacCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATg                             >  1:3101681/1‑91 (MQ=255)

                                                                 acCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGtt                           >  1:1282325/1‑91 (MQ=255)

                                                                    atcatTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCt                        >  1:2168310/1‑91 (MQ=255)

                                                                    atcatTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCt                        >  1:15336/1‑91 (MQ=255)

                                                                      catTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGc                      >  2:2095927/1‑91 (MQ=255)

                                                                       atTTCCAAACTTTGACAACGaatgatggttgttttttattgtttaaattaatcattgcgacttctatatcaatgaaagttatattaatata                     <  2:1684143‑M2/91‑72 (MQ=255)

                                                                       atTTCCAAACTTTGACAACGaatgatggttgttttttattgtttaaattaatcattgcgacttctatatcaatgaaagttatattaatata                     <  2:3385720‑M2/91‑72 (MQ=255)

                                                                       atTTCCAAACTTTGACAACGaatgatggttgttttttattgtttaaattaatcattgcgacttctatatcaatgaaagttatattaatata                     <  1:2721926‑M2/91‑72 (MQ=255)

                                                                         ttCCAAACTTTGACACCGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCata                   <  1:179174/91‑1 (MQ=255)

                                                                          tCCAAACTTTGACATCGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCatat                  <  2:3751719/91‑1 (MQ=255)

                                                                           ccAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCATATc                 >  1:2831399/1‑91 (MQ=255)

                                                                            cAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCATATCg                >  1:3406498/1‑91 (MQ=255)

                                                                            cAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAATCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCATATCg                <  2:1964028/91‑1 (MQ=255)

                                                                             aaaCTTTGACATCGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCATATCGt               <  2:376357/91‑1 (MQ=255)

                                                                             aaaCTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCATATCGt               <  1:1046014/91‑1 (MQ=255)

                                                                                cTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCATATCGTCTa            >  2:3116672/1‑91 (MQ=255)

                                                                                  ttGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCATATCGTCTAtt          <  1:987888/91‑1 (MQ=255)

                                                                                     aCAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCATATCGTCTATTtat       <  1:1517161/91‑1 (MQ=255)

                                                                                      cAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCATATCGTCTATTtata      <  1:2729725/91‑1 (MQ=255)

                                                                                       aaCGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCATATCGTCTATTTATac     <  2:1906094/91‑1 (MQ=255)

                                                                                         cGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTC‑TTTTAACGGGCTCAATAGGCGACATGTTCCTGCATATCGTCTATTTATACACt  <  1:3724180/91‑1 (MQ=255)

                                                                                         agAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATATCGTCTATTTATacac   <  2:2377309/90‑1 (MQ=255)

                                                                                          gAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGCCATGTTCCTGCATATCGTCTATTTATCCACt  >  2:1578960/1‑91 (MQ=255)

                                                                                          gAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCATATCGTCTATTTATACACt  >  2:2178826/1‑91 (MQ=255)

                                                                                          gAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCATATCGTCTATTTATACACt  <  2:3001385/91‑1 (MQ=255)

TCATATATTAATATAACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACAACCATCATTTCCAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCTGCATATCGTCTATTTATACACT  >  USA300TCH1516_ALE/1036752‑1036932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.