BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1182701	194 (0.950)	14 (0.080)	4/136	NT	7.9%	intergenic (+31/‑102)	USA300HOU_RS05900/yfnB	Antibacterial protein 3/Putative HAD‑hydrolase YfnB
*	?	USA300TCH1516_ALE	= 1182728	163 (0.940)	14 (0.080)	4/136	NT	7.9%	intergenic (+58/‑75)	USA300HOU_RS05900/yfnB	Antibacterial protein 3/Putative HAD‑hydrolase YfnB

Only 100 of 288 total aligned reads displayed.

GTGGGTTTACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATA  >  USA300TCH1516_ALE/1182638‑1182818

gtgGGTTTACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACt                                                                                            <  2:1359611/91‑1 (MQ=255)

 tGGGTTTACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTc                                                                                           >  2:3105539‑M2/1‑90 (MQ=255)

 tGGGTTTACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTc                                                                                           >  2:3086060‑M2/1‑90 (MQ=255)

  gggTTTACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTca                                                                                          >  2:2811507‑M2/1‑89 (MQ=255)

     tttACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTcagtt                                                                                       >  1:294179‑M2/1‑86 (MQ=255)

     tttACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTcagtt                                                                                       >  2:2088540‑M2/1‑86 (MQ=255)

     tttACTAGGTAAATTATGTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTcagtt                                                                                       >  1:3388821‑M2/1‑86 (MQ=255)

      ttACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTcagttt                                                                                      >  2:3592134‑M2/1‑85 (MQ=255)

      ttACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTcagttt                                                                                      <  2:342963‑M2/91‑7 (MQ=255)

      ttACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTcagttt                                                                                      >  2:2583962‑M2/1‑85 (MQ=255)

       tACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTcagttta                                                                                     >  1:3715189‑M2/1‑84 (MQ=255)

        tgtctatgtatctaaatcttaacagaggctcaaatttctgcaaaTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGtttat                                                                                    >  1:3569943‑M1/45‑91 (MQ=255)

          tctatgtatctaaatcttaacagaggctcaaatttctgcaaaTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGtttattt                                                                                  >  2:2618088‑M1/43‑91 (MQ=255)

          tAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTcagtttattt                                                                                  <  2:2993009‑M2/91‑11 (MQ=255)

             atgtatctaaatcttaacagaggctcaaatttctgcaaaTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGtttattttat                                                                               >  2:1281829‑M1/40‑91 (MQ=255)

              tAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTttattttatt                                                                              <  1:1615798/91‑1 (MQ=255)

              tAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTttattttatt                                                                              >  2:2064805/1‑91 (MQ=255)

               aaaTTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTtattttattt                                                                             >  2:740122/1‑91 (MQ=255)

               aaaTTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTtattttattt                                                                             <  1:961856/91‑1 (MQ=255)

                aaTTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTg                                                                            >  2:3160509/1‑91 (MQ=255)

                aaTTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTg                                                                            <  2:45597/91‑1 (MQ=255)

                aaTTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTg                                                                            <  2:3524487/91‑1 (MQ=255)

                aaTTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTg                                                                            <  1:2821561/91‑1 (MQ=255)

                  ttattTGGATTCTAATATAATAACTAATATTCGTTAGAATAAACTGGGTGGGCATGCTTTAATGTTATGCACTCAGTTTATTTTATTTGCa                                                                          <  2:1493317/91‑1 (MQ=255)

                     tttGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGaa                                                                       >  1:2069620/1‑91 (MQ=255)

                       tGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAAt                                                                     >  1:2506759/1‑91 (MQ=255)

                       tGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAAt                                                                     >  1:1231404/1‑91 (MQ=255)

                       tGGATTCTAATATAATAACTAATATTCTTGAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTCGCAGAAAt                                                                     >  2:3444565/1‑91 (MQ=255)

                         gATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAAttt                                                                   <  1:781986/91‑1 (MQ=255)

                         gATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAAttt                                                                   >  2:1465478/1‑91 (MQ=255)

                          aTTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTg                                                                  <  1:3279262/91‑1 (MQ=255)

                           ttCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGa                                                                 <  2:1120538/91‑1 (MQ=255)

                           ttCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGa                                                                 <  1:1064144/91‑1 (MQ=255)

                              taatataataACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACGCAGTTTATTTTATTTGCAGAAATTTGAGcc                                                              <  2:3108213/91‑1 (MQ=255)

                              taatataataACTAATATCCTTTAAAATAAACTGGGTGAGCATACTTAAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTAAGcc                                                              >  2:1182305/1‑91 (MQ=255)

                               aatataataACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTACGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCct                                                             >  2:3908279/1‑91 (MQ=255)

                                atataataACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCctc                                                            >  1:1462898/1‑91 (MQ=255)

                                atataataACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCctc                                                            >  1:2213883/1‑91 (MQ=255)

                                atataataACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCctc                                                            >  1:2443164/1‑91 (MQ=255)

                                 tataataACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCctct                                                           >  1:3438543/1‑91 (MQ=255)

                                 tataataACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCctct                                                           >  1:2288690/1‑91 (MQ=255)

                                   taataaCTAATATTCTTTCAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAATATATTTTATTTGCAGAAATTTGAGCCTCCGt                                                         >  2:3290793/1‑91 (MQ=255)

                                   taataaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGt                                                         >  2:3290856/1‑91 (MQ=255)

                                   taataaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGt                                                         <  2:2676250/91‑1 (MQ=255)

                                    aataaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGtt                                                        >  2:945814/1‑91 (MQ=255)

                                    aataaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGtt                                                        <  1:3134392/91‑1 (MQ=255)

                                    aataaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAAGGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGtt                                                        <  2:3543676/91‑1 (MQ=255)

                                     ataaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTa                                                       >  2:3493987/1‑91 (MQ=255)

                                      taaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTaa                                                      <  2:2761807/91‑1 (MQ=255)

                                      taaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTaa                                                      <  2:3221069/91‑1 (MQ=255)

                                       aaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAg                                                     >  1:2886345/1‑91 (MQ=255)

                                         cTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGAt                                                   >  1:3018846/1‑91 (MQ=255)

                                         cTAATATTCTTTAAAATAAACCGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGATAAGAt                                                   >  2:3760761/1‑91 (MQ=255)

                                           aaTATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGAttt                                                 >  2:656783/1‑91 (MQ=255)

                                           aaTATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGAttt                                                 <  2:386303/91‑1 (MQ=255)

                                           aaTATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGAttt                                                 <  1:2042239/91‑1 (MQ=255)

                                            atatTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTa                                                >  2:671830/1‑91 (MQ=255)

                                             tatTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAg                                               >  1:699561/1‑91 (MQ=255)

                                              ttattttAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGa                                              >  2:402251/5‑91 (MQ=255)

                                              atTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGa                                              <  1:2539876/91‑1 (MQ=255)

                                              atTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGa                                              <  1:1080322/91‑1 (MQ=255)

                                              atTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGa                                              >  2:840298/1‑91 (MQ=255)

                                              atTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGa                                              >  1:1699867/1‑91 (MQ=255)

                                               ttCTTTAAAATAAACTGGGTGTGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGAt                                             <  2:3778007/91‑1 (MQ=255)

                                                tCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATa                                            <  1:2320974/91‑1 (MQ=255)

                                                tCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATa                                            <  1:1748949/91‑1 (MQ=255)

                                                   ttAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACAt                                         <  1:1342749/91‑1 (MQ=255)

                                                     AAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAg                                       <  1:987691‑M1/91‑1 (MQ=255)

                                                     AAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAg                                       >  1:3800174‑M1/1‑91 (MQ=255)

                                                      AAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCTGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGa                                      >  1:1174104‑M1/1‑91 (MQ=255)

                                                       AATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGAc                                     <  1:1850253‑M1/91‑1 (MQ=255)

                                                        aTAAACTGGGTGAGCATACTTTAATGTTATGCACTcagtttattttaaagaatattagttattatattagaatccaaataatttacctagt                                    <  1:1525041‑M2/91‑57 (MQ=255)

                                                        ATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACa                                    <  1:1719859‑M1/91‑1 (MQ=255)

                                                         tAAACTGGGTGAGCATACTTTAATGTTATGCACTcagtttattttaaagaatattagttattatattagaatccaaataatttacctagta                                   <  1:2712294‑M2/91‑58 (MQ=255)

                                                          AAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAat                                  >  2:2651251‑M1/1‑91 (MQ=255)

                                                           aaCTGGGTGAGCATACTTTAATGTTATGCACTcagtttattttaaagaatattagttattatattagaatccaaataatttacctagtaaa                                 <  2:1732582‑M2/91‑60 (MQ=255)

                                                           AACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAata                                 <  1:1828042‑M1/91‑1 (MQ=255)

                                                           AACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAata                                 <  2:3348240‑M1/91‑1 (MQ=255)

                                                            ACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAatat                                <  1:2181700‑M1/91‑1 (MQ=255)

                                                            ACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAatat                                >  2:2477984‑M1/1‑91 (MQ=255)

                                                             CTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAAtata                               >  2:1699325‑M1/1‑91 (MQ=255)

                                                              TGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAg                              <  2:101123‑M1/91‑1 (MQ=255)

                                                              TGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAg                              >  2:2289501‑M1/1‑91 (MQ=255)

                                                              TGGGTGAGCATACTGTAATGTTATGCACTCAGGTTATTTTATTTGCAGAAATTTGAGCCTCTGTGAAGATTTAGAGGCATAGACAATATAg                              >  2:2355226‑M1/1‑91 (MQ=255)

                                                               GGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAgg                             <  2:596292‑M1/91‑1 (MQ=255)

                                                                ggTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGga                            <  2:2081811/91‑1 (MQ=255)

                                                                 gTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGgag                           >  1:1032736/1‑91 (MQ=255)

                                                                    aGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATg                        >  1:3871198/1‑91 (MQ=255)

                                                                    aGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATg                        >  2:904432/1‑91 (MQ=255)

                                                                     gCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATgg                       >  1:2345413/1‑91 (MQ=255)

                                                                     gCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATgg                       <  2:1557249/91‑1 (MQ=255)

                                                                     gCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATgg                       <  2:2034079/91‑1 (MQ=255)

                                                                        tACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGa                    <  1:533353/91‑1 (MQ=255)

                                                                        tACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGa                    >  1:3620706/1‑91 (MQ=255)

                                                                         aCTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGaa                   >  2:2213691/1‑91 (MQ=255)

                                                                             tAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGTGCCTCTGTTAAGATTTAGATACATACACAATATAGGTGATGGGGACATTg               >  2:3666712/1‑91 (MQ=255)

                                                                               aTGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTggg             >  2:1952694/1‑91 (MQ=255)

                                                                                  ttATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGata          >  1:3516492/1‑91 (MQ=255)

                                                                                    aTGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGAtata        >  2:1307666/1‑91 (MQ=255)

                                                                                      gCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATaaa      >  2:2979254/1‑91 (MQ=255)

GTGGGTTTACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATA  >  USA300TCH1516_ALE/1182638‑1182818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.