New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1227656179 (0.880)12 (0.060) 8/148 NT 6.4% coding (125/489 nt) def1 Peptide deformylase 1
?USA300TCH1516_ALE = 1227672 183 (0.970)coding (141/489 nt) def1 Peptide deformylase 1

Only 100 of 236 total aligned reads displayed.

GCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATCCGAAAATTATT  >  USA300TCH1516_ALE/1227583‑1227762
                                                                                         |                                                                                          
gcgcAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTAt                                                                                           <  1:11621‑M2/91‑2 (MQ=255)
gcgcAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTAt                                                                                           >  1:2670627‑M2/1‑90 (MQ=255)
 cgcAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTAtg                                                                                          >  2:1027391‑M2/1‑89 (MQ=255)
   cAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTAtgtg                                                                                        >  2:2282707‑M2/1‑87 (MQ=255)
   cAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTAtgtg                                                                                        >  1:3849189‑M2/1‑87 (MQ=255)
    aaGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTAtgtgc                                                                                       >  1:3745899‑M2/1‑86 (MQ=255)
     aGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTAtgtgca                                                                                      >  2:1805721‑M2/1‑85 (MQ=255)
      gCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCAc                                                                                     <  1:1936333/91‑1 (MQ=255)
         gTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTc                                                                                  >  1:2782026/1‑91 (MQ=255)
          ttAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCa                                                                                 <  2:2435728/91‑1 (MQ=255)
           tAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCaa                                                                                <  1:2547950/91‑1 (MQ=255)
           tAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCaa                                                                                <  2:1377846/91‑1 (MQ=255)
            aaaaCATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCaaa                                                                               <  2:3489713/91‑1 (MQ=255)
             aaaCATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAAt                                                                              >  2:3263449/1‑91 (MQ=255)
             aaaCATTTGATGATTCGTTAAAAAGATTATCACAAGCTTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGCGCACCTCAAAt                                                                              >  2:798647/1‑91 (MQ=255)
                 aTTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAAt                                                                          >  2:1306552/1‑91 (MQ=255)
                 aTTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAAt                                                                          <  2:1202794/91‑1 (MQ=255)
                  tttGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATc                                                                         >  2:2060135/1‑91 (MQ=255)
                  tttGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATc                                                                         >  1:580548/1‑91 (MQ=255)
                  tttGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATc                                                                         >  2:841806/1‑91 (MQ=255)
                   ttGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCa                                                                        >  2:3077743/1‑91 (MQ=255)
                       tgatTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCa                                                                    >  1:738370/1‑91 (MQ=255)
                        gatTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCAt                                                                   >  1:640249/1‑91 (MQ=255)
                        gatTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGAACCTCAAATTAATCAGTCAt                                                                   >  2:1463588/1‑91 (MQ=255)
                           tCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGc                                                                <  2:1054967/91‑1 (MQ=255)
                           tCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGc                                                                <  1:1584207/91‑1 (MQ=255)
                            cGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCa                                                               >  1:3458063/1‑91 (MQ=255)
                            cGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCa                                                               >  2:775514/1‑91 (MQ=255)
                              ttAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAg                                                             >  1:3669037/1‑91 (MQ=255)
                               tAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGt                                                            <  1:1059206/91‑1 (MQ=255)
                               tAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGt                                                            <  2:685821/91‑1 (MQ=255)
                                aaaaaGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTg                                                           <  1:3563116/91‑1 (MQ=255)
                                 aaaaGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTgg                                                          <  1:929802/91‑1 (MQ=255)
                                 aaaaGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTgg                                                          >  1:2010970/1‑91 (MQ=255)
                                 aaaaGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTgg                                                          <  2:41588/91‑1 (MQ=255)
                                 aaaaGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTgg                                                          <  1:283889/91‑1 (MQ=255)
                                 aaaaGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTgg                                                          <  2:3132116/91‑1 (MQ=255)
                                 aaaaGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTgg                                                          <  1:1691130/91‑1 (MQ=255)
                                  ctaGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCACGTGGc                                                         >  2:2707837/3‑91 (MQ=255)
                                   aaGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCa                                                        <  2:1980318/91‑1 (MQ=255)
                                    aGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAATTGGCaa                                                       <  1:3080109/91‑1 (MQ=255)
                                     gATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAat                                                      <  2:138596/91‑1 (MQ=255)
                                       ttattaCAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAatta                                                    >  2:2154863/1‑91 (MQ=255)
                                         attaCAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAattatt                                                  >  1:2358467/1‑91 (MQ=255)
                                         attaCAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCGCAAATTAATCAGTCATTGCAAGTGGCAattatt                                                  >  1:3237544/1‑91 (MQ=255)
                                          ttaCAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTg                                                 >  2:2478106/1‑91 (MQ=255)
                                          ttaCAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTg                                                 <  2:2795949/91‑1 (MQ=255)
                                          ttaCAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTg                                                 >  1:1188439/1‑91 (MQ=255)
                                           taCAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGa                                                <  1:1843461/91‑1 (MQ=255)
                                           taCAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGa                                                >  2:484068/1‑91 (MQ=255)
                                                gATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATatgg                                           >  1:178852/1‑91 (MQ=255)
                                                 atgtAGAAGATACAATGGATGCACAAGAAGCTGCTGGCTTATGTGCACCTCGAAGTAATCAGTCATTGCAAGTGGCAATTATTGATatgga                                          <  2:1130466/88‑1 (MQ=255)
                                                   ttAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATatggaaa                                        >  2:2727360/1‑91 (MQ=255)
                                                   ttAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATatggaaa                                        >  2:919739/1‑91 (MQ=255)
                                                    tAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATatggaaat                                       <  2:1677154/91‑1 (MQ=255)
                                                       aagaTACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATatggaaatgga                                    >  1:2266789/1‑91 (MQ=255)
                                                        agaTACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATatggaaatggaa                                   >  2:3576816/1‑91 (MQ=255)
                                                           tACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGa                                <  1:3057771/91‑1 (MQ=255)
                                                             cAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGatt                              <  1:367935/91‑1 (MQ=255)
                                                              aaTGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGatta                             <  2:3921971/91‑1 (MQ=255)
                                                                tGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGattatt                           <  1:2157460/91‑1 (MQ=255)
                                                                 gTATGCACAAGAAGCTGCTGGCTTAtgtgcatacattgtatcttctaaatcttgtaataatctttttaacgaatcatcaaatgttttaact                          <  2:2363216‑M2/91‑67 (MQ=255)
                                                                  tATGCACAAGAAGCTGCTGGCTTAtgtgcatacattgtatcttctaaatcttgtaataatctttttaacgaatcatcaaatgttttaactg                         <  1:3840139‑M2/91‑68 (MQ=255)
                                                                  tATGCACAAGAAGATGATGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGCTTATTAc                         >  2:1574373/1‑91 (MQ=255)
                                                                  gaTGCACAAGAAACTGCTGGCTTATGGGCACCTCAAATTAATCAGTCAGTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTAc                         <  1:3924671/90‑1 (MQ=255)
                                                                   aTGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACa                        >  2:2921514/1‑91 (MQ=255)
                                                                    tGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACaa                       >  2:3203676/1‑91 (MQ=255)
                                                                      cacaAGAAGCTGCTGGCTTAtgtgcatacattgtatcttctaaatcttgtaataatctttttaacgaatcatcaaatgttttaactgcttg                     <  1:728333‑M2/91‑72 (MQ=255)
                                                                      cacaAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACt                     <  1:2563362/91‑1 (MQ=255)
                                                                       acaAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACtt                    >  2:1267519/1‑91 (MQ=255)
                                                                       acaAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACtt                    >  1:351275/1‑91 (MQ=255)
                                                                       acaAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGACATGGACATGGAAGGATTATTACAACtt                    >  2:146240/1‑91 (MQ=255)
                                                                         aagaagCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGt                  >  2:2667738/1‑91 (MQ=255)
                                                                          agaagCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGtt                 <  2:3427773/91‑1 (MQ=255)
                                                                           gaagCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTa                <  2:3697874/91‑1 (MQ=255)
                                                                            aagCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTaa               >  1:1320024/1‑91 (MQ=255)
                                                                             agCTGCTGGCTTAtgtgcatacattgtatcttctaaatcttgtaatagtctttttaacgaatcatcaaatgttttaactgcttgcgctttt              <  1:1905088‑M2/91‑79 (MQ=255)
                                                                              gctgctGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATc             >  1:888737/1‑91 (MQ=255)
                                                                               ctgctgGCTTAtgtgcatacattgtatcttctaaatcttgtaataatctttttaacgaatcatcaaatgttttaactgcttgcgctttttt            <  2:3792626‑M2/91‑81 (MQ=255)
                                                                               ctgctgGCTTAtgtgcatacattgtatcatctacatcttgtaataatctttttaacgaatcatcaaatgttttaactgcttgcgctttttt            <  1:1641032‑M2/91‑81 (MQ=255)
                                                                               ctgctgGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATcc            <  1:794460/91‑1 (MQ=255)
                                                                               ctgctgGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATcc            >  1:1777742/1‑91 (MQ=255)
                                                                                tgctgGCTTAtgtgcatacattgtatcttctaaatcttgtaataatctttttaacgaatcatcaaatgttttaactgcttgcgcttttttc           <  2:3743569‑M2/91‑82 (MQ=255)
                                                                                tgctgGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTTATCCg           >  2:3382285/1‑91 (MQ=255)
                                                                                tgctgGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATCCg           >  2:746662/1‑91 (MQ=255)
                                                                                 gctgGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATCCGa          >  1:1296295/1‑91 (MQ=255)
                                                                                 gctgGCTTATGCGCACCTCAAATTAACCAGTCCTTGCAAGTGGCAACTATTGATATGGAGATGGAAGGATTCTTACAACTTGTTAATCCGa          >  2:2593364/1‑91 (MQ=255)
                                                                                  ctgGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTCTTGATATGGAAATGGAAGGATTATTACAAGTTGTTAATCCGaa         >  1:3960572/1‑91 (MQ=255)
                                                                                  ctgGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATCCGaa         >  2:2062618/1‑91 (MQ=255)
                                                                                  ctgGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATCCGaa         >  1:43713/1‑91 (MQ=255)
                                                                                   tgGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATCCGaaa        <  1:2319564/91‑1 (MQ=255)
                                                                                   tgGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATCCGaaa        <  2:1350647/91‑1 (MQ=255)
                                                                                   tgGCTTACGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATCCGaaa        <  1:1974506/91‑1 (MQ=255)
                                                                                    ggCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATCCGaaaa       >  1:3408331/1‑91 (MQ=255)
                                                                                      cTTATGTGCACCTCAAATTAATCAGTGATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATCCGAAAatt     >  2:2243234/1‑91 (MQ=255)
                                                                                        tATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATCCGAAAattat   <  1:2772011/91‑1 (MQ=255)
                                                                                         aTGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATCCGAAAattatt  >  1:2880403/1‑91 (MQ=255)
                                                                                         aTGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATCCGAAAattatt  >  2:609275/1‑91 (MQ=255)
                                                                                         aTGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATCCGAAAattatt  >  1:1374845/1‑91 (MQ=255)
                                                                                         aTGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATCCGAAAattatt  >  1:687664/1‑91 (MQ=255)
                                                                                         |                                                                                          
GCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTGTTAATCCGAAAATTATT  >  USA300TCH1516_ALE/1227583‑1227762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.