New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1279942194 (0.950)16 (0.090) 10/146 NT 8.0% intergenic (+35/‑227) cdsA/USA300HOU_RS06360 Phosphatidate cytidylyltransferase/Putative zinc metalloprotease
?USA300TCH1516_ALE = 1279967 193 (1.040)intergenic (+60/‑202) cdsA/USA300HOU_RS06360 Phosphatidate cytidylyltransferase/Putative zinc metalloprotease

Only 100 of 263 total aligned reads displayed.

ATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAA  >  USA300TCH1516_ALE/1279877‑1280057
                                                                                          |                                                                                          
attattAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAg                                                                                            <  1:1071948/91‑1 (MQ=255)
attattAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAg                                                                                            <  1:2798425/91‑1 (MQ=255)
attattAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAg                                                                                            <  1:1506562/91‑1 (MQ=255)
attattAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAg                                                                                            <  2:776604/91‑1 (MQ=255)
   attaAATCTTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGaac                                                                                         >  2:3512519‑M2/1‑88 (MQ=255)
   attaAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGaac                                                                                         >  2:2169677‑M2/1‑88 (MQ=255)
    ttaAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGaact                                                                                        <  1:37989‑M2/91‑5 (MQ=255)
     taAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGaactc                                                                                       >  1:422028‑M2/1‑86 (MQ=255)
      aaaTATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGaactcc                                                                                      >  1:1532533‑M2/1‑85 (MQ=255)
      aaaTATTGTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGaactcc                                                                                      >  2:3873150‑M2/1‑85 (MQ=255)
        atatTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCtt                                                                                    >  2:1433650/1‑91 (MQ=255)
        atatTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCtt                                                                                    >  1:2116953/1‑91 (MQ=255)
          atTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCtttt                                                                                  >  2:1599388/1‑91 (MQ=255)
            tttATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTAAGAACTCATTTTGa                                                                                >  2:3841842/1‑91 (MQ=255)
             ttattaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGaa                                                                               <  1:3932918/91‑1 (MQ=255)
             ttattaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGaa                                                                               >  1:3724945/1‑91 (MQ=255)
              tattaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGaaa                                                                              <  1:3584545/91‑1 (MQ=255)
               attaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGaaaa                                                                             >  1:3570402/1‑91 (MQ=255)
               attaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGaaaa                                                                             >  2:739473/1‑91 (MQ=255)
                   aTACAATCTTAATGCTGAGAACAAATCAATAAAGGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATtat                                                                         <  1:3232216/91‑1 (MQ=255)
                    tACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATtata                                                                        >  1:277563/1‑91 (MQ=255)
                     aCAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATAc                                                                       >  1:1005957/1‑91 (MQ=255)
                     aCAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATAc                                                                       >  2:1563440/1‑91 (MQ=255)
                       aaTCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGc                                                                     <  1:1735690/91‑1 (MQ=255)
                        aTCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCa                                                                    >  2:1216817/1‑91 (MQ=255)
                           ttAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAata                                                                 <  2:2551958/91‑1 (MQ=255)
                            tAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAatat                                                                >  1:1577180/1‑91 (MQ=255)
                            tAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAatat                                                                >  2:1794632/1‑91 (MQ=255)
                              aTGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTa                                                              >  2:1082013/1‑91 (MQ=255)
                              aTGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTa                                                              >  1:1649134/1‑91 (MQ=255)
                               tGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTaa                                                             >  1:3832266/1‑91 (MQ=255)
                                gCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAAc                                                            <  1:1847689/91‑1 (MQ=255)
                                 cggagaACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACt                                                           <  2:627042/89‑1 (MQ=255)
                                 cTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACt                                                           <  2:1923264/91‑1 (MQ=255)
                                 cTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACt                                                           <  1:2885933/91‑1 (MQ=255)
                                  tGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACtt                                                          <  2:2252506/91‑1 (MQ=255)
                                  tGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACtt                                                          >  2:1293937/1‑91 (MQ=255)
                                   gagaACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACttt                                                         <  2:537147/91‑1 (MQ=255)
                                   gagaACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACttt                                                         >  2:3761727/1‑91 (MQ=255)
                                    agaACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTg                                                        >  2:1451499/1‑91 (MQ=255)
                                      aaCAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGaa                                                      >  1:2305994/1‑91 (MQ=255)
                                      aaCAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGaa                                                      >  2:2707911/1‑91 (MQ=255)
                                          aaTCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAAtt                                                  >  1:274157/1‑91 (MQ=255)
                                          aaTCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAAtt                                                  >  1:686378/1‑91 (MQ=255)
                                            tCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATtat                                                >  2:920091/1‑91 (MQ=255)
                                                tAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTGGAAAATTATACGc                                            <  2:915178/91‑1 (MQ=255)
                                                 aaaCGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCa                                           >  2:3080341/1‑91 (MQ=255)
                                                  aaCGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCaa                                          >  1:2034621/1‑91 (MQ=255)
                                                  aaCGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCaa                                          >  2:1879973/1‑91 (MQ=255)
                                                   aCGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAat                                         <  2:2462776/91‑1 (MQ=255)
                                                   aCGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAat                                         >  2:1582056/1‑91 (MQ=255)
                                                   aCGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAat                                         <  1:2406478/91‑1 (MQ=255)
                                                    cGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAata                                        >  2:1549968/1‑91 (MQ=255)
                                                      tAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATAtt                                      <  2:1812078/91‑1 (MQ=255)
                                                       aaaGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTa                                     >  1:97566/1‑91 (MQ=255)
                                                       aaaGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTa                                     >  1:792804/1‑91 (MQ=255)
                                                        aaGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTaa                                    <  2:2205230/91‑1 (MQ=255)
                                                         agagGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATGCGCAATATTAACTTTGAAAATTATACGCAATATTAAc                                   <  1:3333761/91‑1 (MQ=255)
                                                         agagGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAAc                                   <  2:1494631/91‑1 (MQ=255)
                                                          gaggagTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACt                                  <  1:820300/91‑1 (MQ=255)
                                                           aggagTTGCTGAGATAATTTAATGAATCTCAGAACTCATTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACtt                                 >  1:3332306/1‑91 (MQ=255)
                                                            ggagTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACttt                                >  1:539404/1‑91 (MQ=255)
                                                             gagTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTg                               >  2:2781759/1‑91 (MQ=255)
                                                              agTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATACTAACTTTGAAAATTATACGCAATATTAACTTTGa                              >  2:432941/1‑91 (MQ=255)
                                                               gTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGaa                             <  2:2042692/91‑1 (MQ=255)
                                                               gTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGaa                             <  1:951774/91‑1 (MQ=255)
                                                                ttGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGACAATTATACGCAATATTAACTTTGaca                            >  2:1101606/1‑89 (MQ=255)
                                                                 tGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGaaaa                           <  1:2064745/91‑1 (MQ=255)
                                                                   cTGAGATAATTTAATGAATCTCAGaactcctctttacgtttattgatttgttctcagcattaagattgtattaataaaatatttaataatg                         <  2:3376859‑M2/91‑68 (MQ=255)
                                                                   cTGAGATAATTTAATGAATCTCAGaactcctctttacgtttattgatttgttctcagcattaagattgtattaataaaatatttaataatg                         <  2:2999752‑M2/91‑68 (MQ=255)
                                                                   cTGAGATAATTTAATGAATCTCAGaactcctctttacgtttattgatttgttctcagcattaagattgtattaataaaatatttaataatg                         <  2:29817‑M2/91‑68 (MQ=255)
                                                                   cTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAtt                         >  2:2781410/1‑91 (MQ=255)
                                                                      agaTAATTTAATGAATCCCAGaactcctctttacgtttattgatttgttctcagcattaagattgtattaataaaatatttaatactggta                      <  1:1739627‑M2/91‑71 (MQ=255)
                                                                        aTAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACg                    <  2:2875488/91‑1 (MQ=255)
                                                                        aTAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACg                    >  2:3577997/1‑91 (MQ=255)
                                                                         tAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGc                   <  2:3922101/91‑1 (MQ=255)
                                                                         tAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGc                   <  2:876878/91‑1 (MQ=255)
                                                                          aaTTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCa                  >  1:3079715/1‑91 (MQ=255)
                                                                           aTTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAACTATACGCaa                 >  1:3789228/1‑91 (MQ=255)
                                                                            tttAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATGTTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAat                >  2:2769414/1‑91 (MQ=255)
                                                                             ttAATTGATCTCTGAGCGCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACTCAATATTAACTTTGAAAATTATACGCAata               <  2:3242516/91‑1 (MQ=17)
                                                                              tAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAatat              >  2:3260323/1‑91 (MQ=255)
                                                                              tAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAatat              <  1:2553744/91‑1 (MQ=255)
                                                                              tAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAatat              >  2:2326736/1‑91 (MQ=255)
                                                                              tAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAatat              <  2:2102276/91‑1 (MQ=255)
                                                                               aaTGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATAtt             <  1:2697041/91‑1 (MQ=255)
                                                                                aTGAATCTCAGAACTCCTTTTGGAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTa            <  2:3190801/91‑1 (MQ=255)
                                                                                aTGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTa            <  1:2181816/91‑1 (MQ=255)
                                                                                 tGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTaa           >  2:414867/1‑91 (MQ=255)
                                                                                   aaTCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACt         <  2:213920/91‑1 (MQ=255)
                                                                                   aaTCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACt         >  1:1465401/1‑91 (MQ=255)
                                                                                    aTCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACtt        <  2:346448/91‑1 (MQ=255)
                                                                                     tctcAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACttt       <  2:3137179/91‑1 (MQ=255)
                                                                                     tctcAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACttt       >  2:372607/1‑91 (MQ=255)
                                                                                      ctcAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTg      <  1:2591545/91‑1 (MQ=255)
                                                                                      ctcAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTg      >  2:2028065/1‑91 (MQ=255)
                                                                                      ctcAGAACTACTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTg      <  2:2651352/91‑1 (MQ=255)
                                                                                       tcAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGa     <  1:1207613/91‑1 (MQ=255)
                                                                                        cAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGaa    >  2:1844603/1‑91 (MQ=255)
                                                                                          gAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGaaaa  <  1:2398251/91‑1 (MQ=255)
                                                                                          |                                                                                          
ATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAA  >  USA300TCH1516_ALE/1279877‑1280057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.