BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1292484 =	149 (0.730)	13 (0.080)	6/128	NT	9.3%	intergenic (+38/‑348)	infB/rbfA	Translation initiation factor IF‑2/Ribosome‑binding factor A
*	?	USA300TCH1516_ALE	1292539 =	134 (0.820)	13 (0.080)	6/128	NT	9.3%	intergenic (+93/‑293)	infB/rbfA	Translation initiation factor IF‑2/Ribosome‑binding factor A

Only 100 of 253 total aligned reads displayed.

AAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTTGTGGTGGC  >  USA300TCH1516_ALE/1292449‑1292629

aaataaatTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATAtt                                                                                            >  1:1580020/1‑91 (MQ=255)

 aataaatTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATAttt                                                                                           >  2:3174691/1‑91 (MQ=255)

 aataaatTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATAttt                                                                                           >  1:1152183/1‑91 (MQ=255)

 aataaatTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATAttt                                                                                           >  1:2812027/1‑91 (MQ=255)

  ataaatTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTg                                                                                          >  1:172432/1‑91 (MQ=255)

   taaatTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGa                                                                                         >  2:2587581/1‑91 (MQ=255)

     aatTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATa                                                                                       >  1:692329/1‑91 (MQ=255)

     aatTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATa                                                                                       <  1:1276540/91‑1 (MQ=255)

      atTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATAc                                                                                      <  1:365934/91‑1 (MQ=255)

       ttACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACt                                                                                     <  2:3727238/91‑1 (MQ=255)

        tACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTa                                                                                    >  1:451935/1‑91 (MQ=255)

         aCAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAg                                                                                   >  1:730416/1‑91 (MQ=255)

         aCAAGCTAAAAGAATAGATAAGCTTGATATGCTCCCTATAAATATTGCACTTTTTACGTGTCTACTTTATAGGGAGCATGTTTGATACTAg                                                                                   >  2:1334366/1‑91 (MQ=255)

          cAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGc                                                                                  >  2:1550989/1‑91 (MQ=255)

          cAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGc                                                                                  >  2:2867565/1‑91 (MQ=255)

           aaGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCt                                                                                 >  1:472851/1‑91 (MQ=255)

           aaGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCt                                                                                 <  1:2279130/91‑1 (MQ=255)

             gCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCttt                                                                               >  2:3869995/1‑91 (MQ=255)

              cTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCtttt                                                                              >  2:2833467/1‑91 (MQ=255)

              cTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCtttt                                                                              <  2:2398550/91‑1 (MQ=255)

              cTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCtttt                                                                              >  1:2701713/1‑91 (MQ=255)

                aaaaGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTgg                                                                            <  2:2315950/91‑1 (MQ=255)

                aaaaGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTgg                                                                            <  1:784816/91‑1 (MQ=255)

                aaaaGTATAGTTAAGATTGATATGCTCCCTACAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTgg                                                                            >  1:3509033/1‑91 (MQ=255)

                 aaaGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGt                                                                           <  2:2487055/91‑1 (MQ=255)

                  aaGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGtt                                                                          <  2:1715096/91‑1 (MQ=255)

                  aaGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGtt                                                                          >  1:1252600/1‑91 (MQ=255)

                      ataGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGtttttt                                                                      >  1:2033910/1‑91 (MQ=255)

                       taGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTtta                                                                     >  1:1686644/1‑91 (MQ=255)

                        aGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTttat                                                                    >  2:3880638/1‑91 (MQ=255)

                        aGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACCTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTttat                                                                    >  1:2127065/1‑91 (MQ=255)

                         gTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTttatt                                                                   >  2:2997617/1‑91 (MQ=255)

                         gTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTttatt                                                                   >  2:77115/1‑91 (MQ=255)

                         gTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTATGGTTTTttatt                                                                   >  2:3293581/1‑91 (MQ=255)

                          ttAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTttatta                                                                  >  2:568543/1‑91 (MQ=255)

                          ttAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTttatta                                                                  >  2:2223415/1‑91 (MQ=255)

                           tAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAg                                                                 <  1:89323/91‑1 (MQ=255)

                           tAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAg                                                                 <  2:105805/91‑1 (MQ=255)

                           tAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAg                                                                 <  1:713863/91‑1 (MQ=255)

                             aGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGaa                                                               >  1:1603711/1‑91 (MQ=255)

                             aGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGaa                                                               <  1:3019976/91‑1 (MQ=255)

                              gATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAAt                                                              >  1:1852423/1‑91 (MQ=255)

                               aTTGATATGCTCCCTATAAATATTGCCCTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATa                                                             >  2:2240849/1‑91 (MQ=255)

                               aTTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATa                                                             <  2:2022317/91‑1 (MQ=255)

                                ttGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAg                                                            <  1:1829805/91‑1 (MQ=255)

                                ttGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAg                                                            <  2:901446/91‑1 (MQ=255)

                                ttGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAg                                                            <  2:1196580/91‑1 (MQ=255)

                                 tGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGa                                                           <  1:806731/91‑1 (MQ=255)

                                   ATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGAtt                                                         <  2:3408900‑M1/91‑1 (MQ=255)

                                     ATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTAc                                                       <  1:1004919‑M1/91‑1 (MQ=255)

                                     ATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTAc                                                       >  1:3262921‑M1/1‑91 (MQ=255)

                                     ATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTAc                                                       >  1:334538‑M1/1‑91 (MQ=255)

                                     ATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTAc                                                       >  2:326172‑M1/1‑91 (MQ=255)

                                      TGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTAcc                                                      <  1:1978100‑M1/91‑1 (MQ=255)

                                         TCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTAt                                                   <  1:1195422‑M1/91‑1 (MQ=255)

                                         TCCCTATAAATATGGCACTTGTTAAGTGTCTACTTTATAGGGAGCATATTTGATGCTAGCTGTTGGTTTTTTATTAGAATAGATTACCTAt                                                   >  2:1478523‑M1/1‑91 (MQ=255)

                                          ccctataaagtagacacttaaaaagtgcaatatttatagggagcatatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTAtt                                                  >  1:583816‑M2/49‑91 (MQ=255)

                                           cctataaagtagacacttaaaaagtgcaatatatatagggagcatatTTGATACTAGCTTTTGGTTTTTTCTTAGAATAGCTTCCCTATTa                                                 >  2:900608‑M2/48‑91 (MQ=255)

                                            CTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTaa                                                >  2:308126‑M1/1‑91 (MQ=255)

                                             tataaagtagacacttaaaaagtgcaatatttatagggagcatatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTaaa                                               >  2:2384392‑M2/46‑91 (MQ=255)

                                              ATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTaaaa                                              >  1:3922320‑M1/1‑91 (MQ=255)

                                               TAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAg                                             <  1:3765930‑M1/91‑1 (MQ=255)

                                                aaagtagacacttaaaaagtgcaatatttatagggagcatatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGt                                            >  2:3067657‑M2/43‑91 (MQ=255)

                                                 aagtagacacttaaaaagtgcaatatttatagggagcatatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATGAAAAGtt                                           >  1:1964170‑M2/42‑91 (MQ=255)

                                                 AATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGtt                                           <  1:1486169‑M1/91‑1 (MQ=255)

                                                 AATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGtt                                           <  1:2319749‑M1/91‑1 (MQ=255)

                                                 AATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGtt                                           <  2:776031‑M1/91‑1 (MQ=255)

                                                 AATATTGCACCTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGtt                                           <  2:3043233‑M1/91‑1 (MQ=255)

                                                  agtagacacttaaaaagtgcaatatttatagggagcatatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTa                                          >  1:1012720‑M2/41‑91 (MQ=255)

                                                  agtagacacttaaaaagtgcaatatttatagggagcatatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTa                                          >  1:2863390‑M2/41‑91 (MQ=255)

                                                  ATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTa                                          <  2:3900530‑M1/91‑1 (MQ=255)

                                                   tatTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTAc                                         >  1:3226311/1‑91 (MQ=255)

                                                     ttGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTAACGt                                       >  1:2403883/1‑91 (MQ=255)

                                                       gCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTta                                     <  2:2644451/91‑1 (MQ=255)

                                                         aCTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTtata                                   >  2:653478/1‑91 (MQ=255)

                                                          cTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTatat                                  >  2:2138741/1‑91 (MQ=255)

                                                             tttAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGa                               <  1:2134450/91‑1 (MQ=255)

                                                                aaGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACAt                            >  1:1340946/1‑91 (MQ=255)

                                                                 aGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATg                           >  2:429667/1‑91 (MQ=255)

                                                                 aGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATg                           >  1:658306/1‑91 (MQ=255)

                                                                 aGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTCGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATg                           >  2:3675131/1‑91 (MQ=255)

                                                                    gtCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGAtt                        >  1:944725/1‑91 (MQ=255)

                                                                     tCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGAttt                       >  2:2468796/1‑91 (MQ=255)

                                                                     tCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGAttt                       >  1:1515018/1‑91 (MQ=255)

                                                                         cTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGta                   <  1:3826534/91‑1 (MQ=255)

                                                                          tttatagggagcatatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGtat                  >  1:993349‑M2/17‑91 (MQ=255)

                                                                              tagggagcatatTTGATACTAGCTTTTGGTTTTTTATTAGACTAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATaaaa              <  2:3484583‑M2/79‑1 (MQ=255)

                                                                              tagggagcatatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATaaaa              <  2:3888633‑M2/79‑1 (MQ=255)

                                                                               agggagcatatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAAt             <  1:622207‑M2/80‑1 (MQ=255)

                                                                                gggagcatatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAAtt            >  2:377750‑M2/11‑91 (MQ=255)

                                                                                gggagcatatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAAtt            >  2:502131‑M2/11‑91 (MQ=255)

                                                                                 ggagcatatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAAttt           >  2:3157734‑M2/10‑91 (MQ=255)

                                                                                 ggagcatatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAAttt           >  2:1677194‑M2/10‑91 (MQ=255)

                                                                                  gagcatatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAAtttt          <  2:1058786‑M2/83‑1 (MQ=255)

                                                                                   agcatatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTtg         <  2:1447808‑M2/84‑1 (MQ=255)

                                                                                   agcatatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTtg         >  2:958633‑M2/8‑91 (MQ=255)

                                                                                      atatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTTgtgg      >  1:1098226‑M2/5‑91 (MQ=255)

                                                                                       tatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTTgtggt     <  1:3758845‑M2/88‑1 (MQ=255)

                                                                                          ttGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTTGTGGTGGc  >  2:1827198/1‑91 (MQ=255)

                                                                                          ttGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTTGTGGTGGc  >  1:2494919/1‑91 (MQ=255)

AAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAATATTGCACTTTTTAAGTGTCTACTTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTTGTGGTGGC  >  USA300TCH1516_ALE/1292449‑1292629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.