BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1336112	140 (0.690)	13 (0.070)	8/138	NT	8.5%	intergenic (+17/‑226)	mgl/glnR	L‑methionine gamma‑lyase/HTH‑type transcriptional regulator GlnR
*	?	USA300TCH1516_ALE	= 1336130	160 (0.910)	13 (0.070)	8/138	NT	8.5%	intergenic (+35/‑208)	mgl/glnR	L‑methionine gamma‑lyase/HTH‑type transcriptional regulator GlnR

Only 100 of 217 total aligned reads displayed.

AAATTGCTGTGACAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGT  >  USA300TCH1516_ALE/1336043‑1336220

aaaTTGCTGTGACAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTggg                                                                                         >  2:2370217‑M2/1‑88 (MQ=255)

 aaTTGCTGTGACAAGAGCTGTTCATCAGTTGAAAGAACAAGGACTTATATACTAGATTAAATTTCACCCTAAATGATAATGTGTTTTgggt                                                                                        <  2:2745142‑M2/91‑5 (MQ=255)

 aaTTGCTGTGACAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTgggt                                                                                        <  1:2978580‑M2/91‑5 (MQ=255)

 aaTTGCTGTGACAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTgggt                                                                                        >  1:2395049‑M2/1‑87 (MQ=255)

  aTTGCTGTGACAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTgggtg                                                                                       <  1:373573‑M2/91‑6 (MQ=255)

  aTTGCTGTGACAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTgggtg                                                                                       <  1:375347‑M2/91‑6 (MQ=255)

   ttGCTGTGACAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTgggtga                                                                                      >  2:753190‑M2/1‑85 (MQ=255)

   ttGCTGTGACAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTgggtga                                                                                      >  2:429593‑M2/1‑85 (MQ=255)

     gCTGTGACAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTgggtgaaa                                                                                    <  1:1455355‑M2/91‑9 (MQ=255)

      cTGTGACAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTgggtgaaat                                                                                   >  1:1006966‑M2/1‑82 (MQ=255)

      cTGTGACAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTgggtgaaat                                                                                   <  1:2153858‑M2/91‑10 (MQ=255)

        gtgACAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTgggtgaaattt                                                                                 >  1:1199658‑M2/1‑80 (MQ=255)

          gACAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAAttttt                                                                               >  2:3830817/1‑91 (MQ=255)

             aaGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGc                                                                            >  2:839766/1‑91 (MQ=255)

              agagCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCg                                                                           <  1:3502205/91‑1 (MQ=255)

              agagCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCg                                                                           <  2:3385200/91‑1 (MQ=255)

                agCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGga                                                                         >  2:3949666/1‑91 (MQ=255)

                agCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGga                                                                         >  1:1869084/1‑91 (MQ=255)

                agCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGga                                                                         >  1:1750265/1‑91 (MQ=255)

                agCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGga                                                                         >  1:2434749/1‑91 (MQ=255)

                 gCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGgag                                                                        <  1:366430/91‑1 (MQ=255)

                   tGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGTGAt                                                                      >  2:3516278/1‑91 (MQ=255)

                   tGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGAt                                                                      <  2:335784/91‑1 (MQ=255)

                    gTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGAtt                                                                     >  1:3105698/1‑91 (MQ=255)

                       aaTCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTAt                                                                  >  1:1367579/1‑91 (MQ=255)

                          cAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAg                                                               >  2:210922/1‑91 (MQ=255)

                          cAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAg                                                               <  2:1218414/91‑1 (MQ=255)

                            gTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGat                                                             >  2:150454/1‑91 (MQ=255)

                             ttGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGatt                                                            <  2:1088155/91‑1 (MQ=255)

                             ttGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGatt                                                            <  2:1861192/91‑1 (MQ=255)

                             ttGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTACGGAGATTTATCAGatt                                                            >  1:3389680/1‑91 (MQ=255)

                              tGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGatta                                                           >  2:3715909/1‑91 (MQ=255)

                                aaaGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGattatt                                                         >  2:2913511/1‑91 (MQ=255)

                                 aaGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTAttt                                                        <  1:1216437/91‑1 (MQ=255)

                                 aaGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTAttt                                                        <  2:290328/91‑1 (MQ=255)

                                    aaCAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTa                                                     <  1:1829616/91‑1 (MQ=255)

                                    aaCAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTa                                                     <  2:3784286/91‑1 (MQ=255)

                                     aCAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaa                                                    <  1:2254389/91‑1 (MQ=255)

                                     aCAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaa                                                    >  2:1990922/1‑91 (MQ=255)

                                     aCAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaa                                                    >  1:1418557/1‑91 (MQ=255)

                                     aCAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaa                                                    <  1:612042/91‑1 (MQ=255)

                                     aCAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaa                                                    >  2:245991/1‑91 (MQ=255)

                                      cAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaaa                                                   >  1:2263781/1‑91 (MQ=255)

                                      cAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaaa                                                   >  1:2620422/1‑91 (MQ=255)

                                       aaGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaaaa                                                  <  2:1588681/91‑1 (MQ=255)

                                        aGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTgggtgaaatttaatctattatataagtccttgttctttcaact                                                 >  1:2820460‑M2/1‑48 (MQ=255)

                                        aGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaaaaa                                                 >  1:343072/1‑91 (MQ=255)

                                         ggACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAAt                                                >  2:794926/1‑91 (MQ=255)

                                         ggACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAAt                                                >  2:168788/1‑91 (MQ=255)

                                          gACTTATATAATAGATTAAATTTCACCCTCAGTGATAATGTGTTCTGGGTGAATTTTGTTGCGGAGATTTATCAGATTATTTTTAAAAAtt                                               <  1:3163063/91‑1 (MQ=255)

                                          aaCTTATATAATAGATTAAATTTCACCCGAAATGATAATGTGTTTTGGGTAAAATTTTTTGCGGAGATTTATCAGATTATTATaaaaaaaa                                               <  2:2132170/90‑3 (MQ=255)

                                           aCTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTg                                              <  1:3894977/91‑1 (MQ=255)

                                           aCTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTg                                              >  2:2616045/1‑91 (MQ=255)

                                           aCTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTg                                              <  1:177967/91‑1 (MQ=255)

                                             ttATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGaa                                            <  1:838246/91‑1 (MQ=255)

                                             ttATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGaa                                            <  2:3233724/91‑1 (MQ=255)

                                             ttATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGaa                                            >  2:297351/1‑91 (MQ=255)

                                              tatataATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGaaa                                           >  2:3137845/1‑91 (MQ=255)

                                                   aataGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAata                                      <  2:1458014/91‑1 (MQ=255)

                                                     taGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATAtt                                    >  2:1128770/1‑91 (MQ=255)

                                                       gATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATAtttt                                  >  1:557776/1‑91 (MQ=255)

                                                         ttAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAg                                <  2:538333/91‑1 (MQ=255)

                                                            aaTTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTg                             <  1:63954/91‑1 (MQ=255)

                                                              tttCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTa                           <  1:180403/91‑1 (MQ=255)

                                                              tttCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTa                           <  2:2194571/91‑1 (MQ=255)

                                                                tCACCCTAAATGATAATGTGTTTTgggtgaaatttaatctattatataagtccttgttctttcaactgattaacagctcttgtcacagcaa                         <  1:2807564‑M2/91‑68 (MQ=255)

                                                                 cACCCTAAATGATAATGTGTTTTgggtgaaatttaatctattatataagtccttgttctttcaactgattaacagctcttgtcacagcaat                        <  1:2201353‑M2/91‑69 (MQ=255)

                                                                  aCCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGAtt                       >  1:1345340/1‑91 (MQ=255)

                                                                  aCCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGAtt                       <  1:3257565/91‑1 (MQ=255)

                                                                  aCCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGAtt                       >  2:1702687/1‑91 (MQ=255)

                                                                   cccTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCTTATATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTg                      >  2:3486338/1‑91 (MQ=255)

                                                                   cccTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTg                      >  1:1649292/1‑91 (MQ=255)

                                                                   cccTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTg                      >  1:1975475/1‑91 (MQ=255)

                                                                   cccTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTg                      >  2:1531159/1‑91 (MQ=255)

                                                                     cTAAATGATAATGTGTTTTgggtgaaatttaatctattatataagtccttgttctttcaactgattaacagctcttgtcacagcaatttta                    <  1:3585216‑M2/91‑73 (MQ=255)

                                                                      tAAATGATAATGTGTTTTgggtgaaatttaatctattatataagtccttgttctttcaactgattaacagctcttgtcacagcaattttaa                   <  2:1026479‑M2/91‑74 (MQ=255)

                                                                      tAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGttt                   <  2:2774078/91‑1 (MQ=255)

                                                                      tAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGttt                   <  1:2389891/91‑1 (MQ=255)

                                                                       aaaTGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGtttt                  >  2:3578703/1‑91 (MQ=255)

                                                                       aaaTGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGtttt                  <  1:2671098/91‑1 (MQ=255)

                                                                       aaaTGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGtttt                  >  1:2116241/1‑91 (MQ=255)

                                                                            aTAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTc             >  1:204603/1‑91 (MQ=255)

                                                                             tAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCg            >  2:3064416/1‑91 (MQ=255)

                                                                              aaTGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGt           >  1:827654/1‑91 (MQ=255)

                                                                               aTGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGtt          <  1:2019260/91‑1 (MQ=255)

                                                                               aTGTGTTTGCGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGtt          <  1:451175/91‑1 (MQ=255)

                                                                                tgtgTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGttt         <  1:2924625/91‑1 (MQ=255)

                                                                                 gtgtTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGtttt        <  2:2600031/91‑1 (MQ=255)

                                                                                  tgtTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTa       <  2:601426/91‑1 (MQ=255)

                                                                                   gtTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAg      >  2:2845438/1‑91 (MQ=255)

                                                                                   gtTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAg      <  2:1788512/91‑1 (MQ=255)

                                                                                    ttttGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGa     <  2:3035934/91‑1 (MQ=255)

                                                                                    ttttGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGa     >  2:366615/1‑91 (MQ=255)

                                                                                    ttttGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGa     <  2:3217732/91‑1 (MQ=255)

                                                                                    ttttGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGa     <  1:478233/91‑1 (MQ=255)

                                                                                    ttttGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGa     >  2:1649574/1‑91 (MQ=255)

                                                                                     tttGGGTTAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGaa    <  1:2831509/91‑1 (MQ=255)

                                                                                     tttGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGaa    <  1:1095372/91‑1 (MQ=255)

                                                                                      ttGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAg   <  1:738630/91‑1 (MQ=255)

                                                                                      ttGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATAGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAg   >  2:3547452/1‑91 (MQ=255)

AAATTGCTGTGACAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGT  >  USA300TCH1516_ALE/1336043‑1336220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.