BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1353894 =	179 (0.880)	9 (0.050)	5/134	NT	5.6%	intergenic (+87/+56)	nucH/USA300HOU_RS06735	Thermonuclease/hypothetical protein
*	?	USA300TCH1516_ALE	1353946 =	154 (0.900)	9 (0.050)	5/134	NT	5.6%	intergenic (+139/+4)	nucH/USA300HOU_RS06735	Thermonuclease/hypothetical protein

Only 100 of 285 total aligned reads displayed.

ATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCTAATAATACGTCG  >  USA300TCH1516_ALE/1353856‑1354036

  ttattattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAt                                                                                          <  1:2519306/91‑1 (MQ=255)

  ttattattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAt                                                                                          >  1:2705598/1‑91 (MQ=255)

  ttattattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAt                                                                                          <  1:1798660/91‑1 (MQ=255)

  ttattattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAt                                                                                          <  2:2865670/91‑1 (MQ=255)

      tattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTa                                                                                      >  2:685389/1‑91 (MQ=255)

      tattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTa                                                                                      <  1:1481822/91‑1 (MQ=255)

      tattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGCGCGTATCGAGCGTGATGGATTATTATGCCTTTGCTTTTa                                                                                      >  1:3678090/1‑91 (MQ=255)

       attaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTAc                                                                                     <  1:2108919/91‑1 (MQ=255)

        ttaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACt                                                                                    <  2:404106/91‑1 (MQ=255)

         taCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACtt                                                                                   >  1:1018804/1‑91 (MQ=255)

          aCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCAGAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTg                                                                                  <  1:3139075/91‑1 (MQ=255)

            cATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGaa                                                                                <  1:1110833/91‑1 (MQ=255)

              tAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAata                                                                              <  2:607217/91‑1 (MQ=255)

                aaTTTATATATAGAAATAATTTAAAGGCATAATAACGATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAAtata                                                                            <  2:3907563/91‑1 (MQ=255)

                aaTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAAtata                                                                            >  2:2578507/1‑91 (MQ=255)

                aaTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAAtata                                                                            >  1:111477/1‑91 (MQ=255)

                 gtttATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAg                                                                           <  2:3925359/90‑1 (MQ=255)

                 aTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAg                                                                           <  2:1497215/91‑1 (MQ=255)

                  tttATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGc                                                                          <  1:2823606/91‑1 (MQ=255)

                    tatatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtg                                                                        >  1:3615457/1‑91 (MQ=255)

                    tatatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtg                                                                        <  2:2175476/91‑1 (MQ=255)

                     atatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtgt                                                                       >  1:3498627/1‑91 (MQ=255)

                     atatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtgt                                                                       >  2:207946/1‑91 (MQ=255)

                     atatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAACGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtgt                                                                       >  2:3552112/1‑91 (MQ=255)

                     atatataGAAATAATTTAAAGGCATAATAACCATAGTGCGCATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtgt                                                                       >  2:3256464/1‑91 (MQ=255)

                      tatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtgtg                                                                      >  1:3276158/1‑91 (MQ=255)

                        tataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGAt                                                                    <  1:620962/91‑1 (MQ=255)

                        tataGAAATAATGTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGAt                                                                    <  1:145227/91‑1 (MQ=255)

                         ataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGAtt                                                                   >  1:485536/1‑91 (MQ=255)

                            gAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGa                                                                >  1:277352/1‑91 (MQ=255)

                              aataatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATc                                                              >  2:2216750/1‑91 (MQ=255)

                              aataatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATc                                                              <  1:1250997/91‑1 (MQ=255)

                              aataatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATc                                                              >  1:709672/1‑91 (MQ=255)

                               ataatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCa                                                             <  2:2769031/91‑1 (MQ=255)

                                taatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCaa                                                            <  2:573270/91‑1 (MQ=255)

                                  atTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAcc                                                          >  1:2671880/1‑91 (MQ=255)

                                  atTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAcc                                                          <  1:54943/91‑1 (MQ=255)

                                    ttAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTg                                                        <  2:3851998/91‑1 (MQ=255)

                                     tAAAGGCATAATAACCATAGTGCGTATCGAGCGTAACGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGt                                                       <  2:3115726/91‑1 (MQ=255)

                                      cAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGtt                                                      <  2:177262‑M1/90‑1 (MQ=255)

                                       AAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTc                                                     <  1:2248913‑M1/91‑1 (MQ=255)

                                        AGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCt                                                    >  1:3941093‑M1/1‑91 (MQ=255)

                                        AGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCt                                                    >  1:2056047‑M1/1‑91 (MQ=255)

                                        AGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCt                                                    >  2:1221642‑M1/1‑91 (MQ=255)

                                        AGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCt                                                    <  2:1431811‑M1/91‑1 (MQ=255)

                                         GGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtt                                                   >  2:1895326‑M1/1‑91 (MQ=255)

                                         GGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtt                                                   >  2:1904185‑M1/1‑91 (MQ=255)

                                          GCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCttt                                                  >  2:2926207‑M1/1‑91 (MQ=255)

                                           CATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCttta                                                 <  2:3620088‑M1/91‑1 (MQ=255)

                                            ATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttat                                                <  2:3750802‑M1/91‑1 (MQ=255)

                                             taataatccattacgctcgatacgcactatggttattatgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttatt                                               >  1:2589428‑M2/46‑91 (MQ=255)

                                              AATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttattt                                              <  2:1613310‑M1/91‑1 (MQ=255)

                                              AATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttattt                                              >  2:1703742‑M1/1‑91 (MQ=255)

                                               ataatccattacgctcgatacgcactatggttattatgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttattta                                             >  1:184804‑M2/44‑91 (MQ=255)

                                               ataatccattacgctcgatacgcactatggttattatgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttattta                                             >  2:2493392‑M2/44‑91 (MQ=255)

                                               ATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttattta                                             >  1:1285864‑M1/1‑91 (MQ=255)

                                               ATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttattta                                             <  1:1764861‑M1/91‑1 (MQ=255)

                                               ATAACCATAGGGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttattta                                             >  1:1563100‑M1/1‑91 (MQ=255)

                                                  ACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAg                                          <  1:1699195‑M1/91‑1 (MQ=255)

                                                   ccATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAgg                                         >  1:515251/1‑91 (MQ=255)

                                                    cgtAGTGCGTATCGAGCGTAATGGATTAGTATGCCTGTGATTTTACTTGAATATAGCTGTGATTTGATCAGCCTGTTGTTTATGTAAAggg                                        <  2:1338355/89‑1 (MQ=255)

                                                    cATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAggg                                        <  2:3645523/91‑1 (MQ=255)

                                                    cATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAggg                                        <  1:2608888/91‑1 (MQ=255)

                                                     aTAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGgt                                       >  2:1302170/1‑91 (MQ=255)

                                                     aTAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGgt                                       <  1:1863612/91‑1 (MQ=255)

                                                       aGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGgtgt                                     >  2:949422/1‑91 (MQ=255)

                                                             tATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGAt                               >  1:1051833/1‑91 (MQ=255)

                                                             tATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGAt                               >  1:123880/1‑91 (MQ=255)

                                                             tATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGAt                               >  1:796999/1‑91 (MQ=255)

                                                                cGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGc                            >  2:2687587/1‑91 (MQ=255)

                                                                 gAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGct                           <  1:929109/91‑1 (MQ=255)

                                                                 gAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGct                           <  2:1038873/91‑1 (MQ=255)

                                                                    cGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTa                        <  1:384830/91‑1 (MQ=255)

                                                                    cGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTa                        >  2:795432/1‑91 (MQ=255)

                                                                    cGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTa                        >  1:2151480/1‑91 (MQ=255)

                                                                    cGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTa                        >  2:1130473/1‑91 (MQ=255)

                                                                       aaTGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATgg                     <  2:2970767/91‑1 (MQ=255)

                                                                       aaTGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATgg                     <  1:1657344/91‑1 (MQ=255)

                                                                          ggATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCtt                  >  2:1854219/1‑91 (MQ=255)

                                                                          ggATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAAGGTGTTTAGATAGCTCTATGGCtt                  >  2:3685698/1‑91 (MQ=255)

                                                                           gATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTc                 >  1:1261069/1‑91 (MQ=255)

                                                                           gATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTc                 >  2:435725/1‑91 (MQ=255)

                                                                            attattATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGGTCTATGGCTTCg                <  1:3026655/91‑1 (MQ=255)

                                                                            attattATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCg                <  2:846382/91‑1 (MQ=255)

                                                                            attattATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCg                <  1:3324611/91‑1 (MQ=255)

                                                                            attattATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCg                >  2:1507675/1‑91 (MQ=255)

                                                                             ttattatgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGc               <  2:3872030‑M2/78‑1 (MQ=255)

                                                                               attatGCCGTTGATTTTACTTGGATATAGCTGTGATTTGATCAGCCTGTTCTTTATTTAAGGGGTGTTTAGATAGCTCTATGGGTTCGCta             <  2:5422/91‑1 (MQ=255)

                                                                                 tatgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCtaat           <  2:1393843‑M2/82‑1 (MQ=255)

                                                                                 tatgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCtaat           >  2:2013696‑M2/10‑91 (MQ=255)

                                                                                 tatgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCtaat           <  2:2409402‑M2/82‑1 (MQ=255)

                                                                                   tgcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCtaataa         >  2:2255915‑M2/8‑91 (MQ=255)

                                                                                    gcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCTaataat        >  2:2055724‑M2/7‑91 (MQ=255)

                                                                                    gcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCTaataat        >  2:2148793‑M2/7‑91 (MQ=255)

                                                                                    gcctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCTaataat        >  2:3409696‑M2/7‑91 (MQ=255)

                                                                                      ctttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCTAATAATAc      >  1:987722‑M2/5‑91 (MQ=255)

                                                                                       tttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCTAATAATACg     >  2:467535‑M2/4‑91 (MQ=255)

                                                                                       tttGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCTAATAATACg     <  2:1963579‑M2/88‑1 (MQ=255)

                                                                                         tGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCTAATAATACGTc   <  1:2467687‑M2/90‑1 (MQ=255)

                                                                                          gATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCTAATAATAcgtcg  >  1:2335853/1‑91 (MQ=255)

ATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCGCTAATAATACGTCG  >  USA300TCH1516_ALE/1353856‑1354036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.