BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1361481	174 (0.850)	11 (0.060)	7/140	NT	6.7%	intergenic (+20/+273)	USA300HOU_RS06765/USA300TCH1516_01271	Putative phosphatase/hypothetical protein
*	?	USA300TCH1516_ALE	= 1361509	153 (0.860)	11 (0.060)	7/140	NT	6.7%	intergenic (+48/+245)	USA300HOU_RS06765/USA300TCH1516_01271	Putative phosphatase/hypothetical protein

Only 100 of 249 total aligned reads displayed.

TAATGAAAATGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGA  >  USA300TCH1516_ALE/1361419‑1361599

tAATGAAAATGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGTTATTTGAATAAGATATCTtgtg                                                                                            >  2:400139/1‑91 (MQ=255)

 aaTGAAAATGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGg                                                                                           >  1:2164225‑M2/1‑90 (MQ=255)

  aTGAAAATGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgt                                                                                          <  1:3022369‑M2/91‑3 (MQ=255)

  aTGAAAATGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgt                                                                                          <  1:3022918‑M2/91‑3 (MQ=255)

  aTGAAAATGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgt                                                                                          >  1:3268252‑M2/1‑89 (MQ=255)

  aTGAAAATGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgt                                                                                          <  1:1205083‑M2/91‑3 (MQ=255)

   gtatttcaaatcctccatagtataactgaagtcattttcacaaaaataaaAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGtt                                                                                         >  1:317039‑M1/51‑91 (MQ=255)

     atttcaaatcctccatagtataactgaagtcattttcacaaaaataaaAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTaa                                                                                       >  2:290115‑M1/49‑91 (MQ=255)

       aaTGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgttaagg                                                                                     <  1:788070‑M2/91‑8 (MQ=255)

        tcaaatcctccatagtataactgaagtcattttcacaaaaataaaAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGc                                                                                    >  2:836524‑M1/46‑91 (MQ=255)

        tcaaatcctccatagtataactgaagtcattttcacaaaaataaaAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGc                                                                                    >  2:3184477‑M1/46‑91 (MQ=255)

        aTGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgttaaggc                                                                                    <  1:1383304‑M2/91‑9 (MQ=255)

        aTGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgttaaggc                                                                                    >  2:1647184‑M2/1‑83 (MQ=255)

          ggTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgttaaggctt                                                                                  <  1:599409‑M2/91‑11 (MQ=255)

          ggTATTCCACAGGCCCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgttaaggctt                                                                                  >  2:3352027‑M2/1‑81 (MQ=255)

           gTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCttt                                                                                 <  2:1725064/91‑1 (MQ=255)

           gTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCttt                                                                                 >  1:2950813/1‑91 (MQ=255)

           gTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCttt                                                                                 >  2:2022260/1‑91 (MQ=255)

             aTTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCttttt                                                                               >  1:728969/1‑91 (MQ=255)

              ttCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTa                                                                              >  2:35468/1‑91 (MQ=255)

                  acaTGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTAtttt                                                                          <  1:2222972/91‑1 (MQ=255)

                  acaTGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTAtttt                                                                          <  2:1584411/91‑1 (MQ=255)

                  acaTGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTAtttt                                                                          <  2:1225726/91‑1 (MQ=255)

                  acaTGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTAtttt                                                                          <  2:3045973/91‑1 (MQ=255)

                  acaTGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTAtttt                                                                          <  2:3636266/91‑1 (MQ=255)

                  acaTGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTAtttt                                                                          >  1:1275734/1‑91 (MQ=255)

                  acaTGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTAtttt                                                                          >  1:1076383/1‑91 (MQ=255)

                    aTGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTtg                                                                        >  2:1632194/1‑91 (MQ=255)

                    aTGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTtg                                                                        <  1:2708817/91‑1 (MQ=255)

                    aTGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTtg                                                                        <  2:2365352/91‑1 (MQ=255)

                     tGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTtgt                                                                       >  2:1047118/1‑91 (MQ=255)

                       cgcTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGa                                                                     <  2:2520109/91‑1 (MQ=255)

                          tCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGaaaa                                                                  >  1:1312431/1‑91 (MQ=255)

                          tCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGaaaa                                                                  <  1:874978/91‑1 (MQ=255)

                           cAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAAt                                                                 >  2:2136601/1‑91 (MQ=255)

                             aaaaaTTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGa                                                               >  2:2975712/1‑91 (MQ=255)

                               aaaTTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACt                                                             >  2:2564290/1‑91 (MQ=255)

                               aaaTTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACt                                                             <  2:2705778/91‑1 (MQ=255)

                                aaTTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTCGTTAAGGCTTTTTATTTTTGTGAAAATGACtt                                                            <  2:3875915/91‑1 (MQ=255)

                                 aTTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACttt                                                           >  2:616013/1‑90 (MQ=255)

                                 aTTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTc                                                           >  1:3215057/1‑91 (MQ=255)

                                   tGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgttaaggctttttttaaaatttataacaatttttt                                                         <  1:1529697‑M2/91‑36 (MQ=255)

                                   tGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAg                                                         >  2:1321672/1‑91 (MQ=255)

                                    gTTATGAATTTTAAAATAAGCCTTAGCACATGATATTTGGATAAGATATCTTGGGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGt                                                        <  1:3681601/91‑1 (MQ=255)

                                    gTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGt                                                        <  1:2615225/91‑1 (MQ=255)

                                     ttATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGtt                                                       <  1:444568/91‑1 (MQ=255)

                                     ttATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGtt                                                       >  2:7862/1‑91 (MQ=255)

                                     ttATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGtt                                                       >  1:2407585/1‑91 (MQ=255)

                                     ttATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGtt                                                       <  2:1262681/91‑1 (MQ=255)

                                     ttATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGtt                                                       >  1:2935477/1‑91 (MQ=255)

                                       ataAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTtat                                                     <  1:1039877/91‑1 (MQ=255)

                                       ataAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTtat                                                     >  1:2853449/1‑91 (MQ=255)

                                       ataAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTtat                                                     >  1:3093370/1‑91 (MQ=255)

                                          aaTTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACt                                                  <  1:1794253/91‑1 (MQ=255)

                                          aaTTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACt                                                  >  1:1602478/1‑91 (MQ=255)

                                           aTTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTa                                                 <  2:2279986/91‑1 (MQ=255)

                                             tttAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATg                                               <  2:2771283/91‑1 (MQ=255)

                                                 aaaTAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATggagg                                           <  1:796132/91‑1 (MQ=255)

                                                 aaaTAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATggagg                                           >  2:2407706/1‑91 (MQ=255)

                                                  aaTAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATggagga                                          >  1:283965/1‑91 (MQ=255)

                                                  aaTAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATggagga                                          >  1:2141709/1‑91 (MQ=255)

                                                   aTAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGAt                                         <  2:1533807/91‑1 (MQ=255)

                                                    tAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGCAtt                                        >  1:3561303/1‑91 (MQ=255)

                                                     AAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGAttt                                       >  2:2224836‑M1/1‑91 (MQ=255)

                                                        ccTTAACACATGATATTTGAATAAGATATCTTGTGgttaaggcttattttaaaatttataacaattttttgagcgcatgtggaataccatt                                    <  2:2149171‑M2/91‑57 (MQ=255)

                                                        CCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGaa                                    <  1:1769866‑M1/91‑1 (MQ=255)

                                                        CCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTAATTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGaa                                    <  2:3480511‑M1/91‑1 (MQ=255)

                                                        CCTTAACACATGATACTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGACAATGACTTCAGTTATACTATGGAGGATTTGaa                                    <  1:3371026‑M1/91‑1 (MQ=255)

                                                         cTTAACACATGATATTTGAATAAGATATCTTGTGgttaaggcttattttaaaatttataacaattttttgagcgcatgtggaataccattt                                   <  1:2386102‑M2/91‑58 (MQ=255)

                                                          ttAACACATGATATTTGAATAAGATATCTTGTGgttaaggcttattttaaaatttataacaattttttgagcgcatgtggaataccatttt                                  <  2:2259347‑M2/91‑59 (MQ=255)

                                                            aaCACATGATATTTGAATAAGATATCTTGTGgttaaggcttattttaaaatttataacaattttttgagcgcatgtggaataccattttca                                <  2:3708442‑M2/91‑61 (MQ=255)

                                                            AACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATAc                                >  2:3046745‑M1/1‑91 (MQ=255)

                                                             ACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACa                               <  1:364116‑M1/91‑1 (MQ=255)

                                                              CACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACAt                              <  1:3942682‑M1/91‑1 (MQ=255)

                                                                caTGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACatat                            <  2:1997010/91‑1 (MQ=255)

                                                                caTGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACatat                            <  1:225149/91‑1 (MQ=255)

                                                                 aTGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATAtt                           <  2:404904/91‑1 (MQ=255)

                                                                 aTGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTCAAATACATAtt                           >  1:3588569/1‑91 (MQ=255)

                                                                   gATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATAtttt                         >  1:518352/1‑91 (MQ=255)

                                                                   gATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATAtttt                         >  2:2583687/1‑91 (MQ=255)

                                                                   gATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATAtttt                         <  2:1871662/91‑1 (MQ=255)

                                                                    atatTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTa                        >  1:1557436/1‑91 (MQ=255)

                                                                     tatTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGTGTATTTGAAATTCATATTTTAg                       >  2:1133916/1‑91 (MQ=255)

                                                                     tatTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATAACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAg                       >  2:3485279/1‑91 (MQ=255)

                                                                       tttGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGAt                     <  1:427525/91‑1 (MQ=255)

                                                                              aaGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAAt              <  2:2748914/91‑1 (MQ=255)

                                                                               aGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATg             <  2:468712/91‑1 (MQ=255)

                                                                                  tatCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGata          <  1:1941959/91‑1 (MQ=255)

                                                                                    tCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGatatt        >  2:1411773/1‑90 (MQ=255)

                                                                                    tCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATc        >  2:5510/1‑91 (MQ=255)

                                                                                    tCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATc        >  2:2169544/1‑91 (MQ=255)

                                                                                      ttGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCaa      <  1:1694834/91‑1 (MQ=255)

                                                                                      ttGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCaa      >  1:305504/1‑91 (MQ=255)

                                                                                      ttGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCaa      >  1:1475486/1‑91 (MQ=255)

                                                                                       tgtgGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCaaa     <  1:378674/91‑1 (MQ=255)

                                                                                       tgtgGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCaaa     >  1:1938877/1‑91 (MQ=255)

                                                                                        gtgGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAAc    <  1:83351/91‑1 (MQ=255)

                                                                                         tgGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACg   >  2:3286555/1‑91 (MQ=255)

                                                                                         tgGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACg   >  2:893805/1‑91 (MQ=255)

                                                                                          ggTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGa  >  2:3535673/1‑91 (MQ=255)

TAATGAAAATGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGA  >  USA300TCH1516_ALE/1361419‑1361599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.