BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1371838 =	163 (0.800)	7 (0.040)	5/142	NT	5.1%	coding (1368/1989 nt)	tkt	Transketolase
*	?	USA300TCH1516_ALE	1371876 =	115 (0.640)	7 (0.040)	5/142	NT	5.1%	coding (1406/1989 nt)	tkt	Transketolase

Only 100 of 192 total aligned reads displayed.

ATTTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTAATGAAACAAG  >  USA300TCH1516_ALE/1371786‑1371966

attTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATgg                                                                                            >  1:543611/1‑91 (MQ=255)

 tttAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGt                                                                                           <  1:3308485/91‑1 (MQ=255)

 tttAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGt                                                                                           <  1:1358215/91‑1 (MQ=255)

  ttAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTc                                                                                          <  1:3249499/91‑1 (MQ=255)

  ttAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTc                                                                                          <  2:2458589/91‑1 (MQ=255)

   tAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTcc                                                                                         <  1:2877369/91‑1 (MQ=255)

     aaaCCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTa                                                                                       <  1:2815688/91‑1 (MQ=255)

     aaaCCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTa                                                                                       <  2:2546178/91‑1 (MQ=255)

     aaaCCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTa                                                                                       <  2:2914961/91‑1 (MQ=255)

         cAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCa                                                                                   <  1:1194201/91‑1 (MQ=255)

           gCGTTACGTTTATCATCAATTATGGGATTAACTGCAACGTTCATCTTCACACATGATTCGATTGCAGTAGGTGCAGATGGTCCTACTCATg                                                                                 >  2:1055804/1‑91 (MQ=255)

            cGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGa                                                                                <  1:1089907/91‑1 (MQ=255)

            cGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGa                                                                                >  1:1297807/1‑91 (MQ=255)

             gTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGaa                                                                               >  1:1893228/1‑91 (MQ=255)

             gTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGaa                                                                               <  2:2438242/91‑1 (MQ=255)

             gTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGaa                                                                               <  2:1658365/91‑1 (MQ=255)

             gTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGaa                                                                               >  1:2797230/1‑91 (MQ=255)

             gTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGaa                                                                               >  2:720272/1‑91 (MQ=255)

              ttACGTTTATCATCAATTATGGGTTTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAAc                                                                              <  2:3011239/91‑1 (MQ=255)

              ttACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAAc                                                                              <  1:1848288/91‑1 (MQ=255)

                 cGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCaa                                                                           <  1:2242332/91‑1 (MQ=255)

                 cGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCaa                                                                           <  2:1555002/91‑1 (MQ=255)

                 cGTTTATCAGCAATTATGGGATTAAATGCAACGTTCATCTTCACGCATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCaa                                                                           <  2:1245511/91‑1 (MQ=255)

                     tATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGa                                                                       >  1:1240456/1‑91 (MQ=255)

                     tATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGa                                                                       >  1:2428423/1‑91 (MQ=255)

                       tcatcaATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGc                                                                     <  2:1736174/91‑1 (MQ=255)

                       tcatcaATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGc                                                                     <  1:3094360/91‑1 (MQ=255)

                        catcaATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCa                                                                    >  1:1392454/1‑91 (MQ=255)

                          tcaATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAAt                                                                  <  2:795316/91‑1 (MQ=255)

                          tcaATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAAt                                                                  <  2:3063456/91‑1 (MQ=255)

                           caATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAAtt                                                                 >  2:3895581/1‑91 (MQ=255)

                             aTTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAg                                                               >  1:2967730/1‑91 (MQ=255)

                              ttATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGc                                                              <  2:145296/91‑1 (MQ=255)

                              ttATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGc                                                              <  2:1342087/91‑1 (MQ=255)

                               tATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCt                                                             >  2:1535205/1‑91 (MQ=255)

                                aTGGGATTAAATGGAACGTTCATCTTCACACATGATTCAATTGGAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTg                                                            <  1:3949510/91‑1 (MQ=255)

                                aTGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTg                                                            <  1:305832/91‑1 (MQ=255)

                                aTGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTg                                                            <  1:323560/91‑1 (MQ=255)

                                  gggATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGa                                                          >  2:1918359/1‑91 (MQ=255)

                                  gggATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGa                                                          >  1:1618228/1‑91 (MQ=255)

                                  gggATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGa                                                          >  2:1257376/1‑91 (MQ=255)

                                   tggttcatgagtaggacCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGAt                                                         >  1:2572363‑M1/18‑91 (MQ=255)

                                      ttAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTaa                                                      <  2:1789447/91‑1 (MQ=255)

                                      ttAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTaa                                                      <  2:133916/91‑1 (MQ=255)

                                         aaTGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAagag                                                   >  1:2362765/1‑91 (MQ=255)

                                         aaTGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAagag                                                   <  2:2107018/91‑1 (MQ=255)

                                         aaTGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAagag                                                   <  1:1050696/91‑1 (MQ=255)

                                           tGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGcc                                                 <  1:869717/91‑1 (MQ=255)

                                             cAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCAt                                               <  2:370498/91‑1 (MQ=255)

                                             cAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCAt                                               <  2:3158731/91‑1 (MQ=255)

                                               aCGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTc                                             >  1:3641423/1‑91 (MQ=255)

                                               aCGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTc                                             <  1:3274521/91‑1 (MQ=255)

                                                 gTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCa                                           >  2:1503158/1‑91 (MQ=255)

                                                 gTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCa                                           <  2:334725/91‑1 (MQ=255)

                                                     ATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAata                                       >  2:3252837‑M1/1‑91 (MQ=255)

                                                      tcttcacctactgcaattgaatcatgtgtgaagatgGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAatat                                      >  1:948293‑M2/37‑91 (MQ=255)

                                                      TCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAatat                                      >  1:2071453‑M1/1‑91 (MQ=255)

                                                       CTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATg                                     >  1:432329‑M1/1‑91 (MQ=255)

                                                        TTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGa                                    <  2:3345834‑M1/91‑1 (MQ=255)

                                                         TCACACATGATTCAATTGTAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGaa                                   >  2:1768582‑M1/1‑91 (MQ=255)

                                                         TCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGaa                                   <  1:3744815‑M1/91‑1 (MQ=255)

                                                          CACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAAt                                  <  1:292691‑M1/91‑1 (MQ=255)

                                                          CACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAAt                                  <  2:3604281‑M1/91‑1 (MQ=255)

                                                           acctactgcaattgaatcatgtgtgaagatgGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATg                                 >  1:3501440‑M2/32‑91 (MQ=255)

                                                           ACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATg                                 >  2:1614036‑M1/1‑91 (MQ=255)

                                                            CACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGt                                <  2:2487057‑M1/91‑1 (MQ=255)

                                                              caTGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTa                              >  2:2738421/1‑91 (MQ=255)

                                                               aTGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTAt                             <  2:3392360/91‑1 (MQ=255)

                                                                    tCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTc                        <  1:1236315/91‑1 (MQ=255)

                                                                    tCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTc                        <  2:2963442/91‑1 (MQ=255)

                                                                    tCAATTGCAGGAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTc                        <  2:239876/91‑1 (MQ=255)

                                                                     cAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTcc                       <  2:579500/91‑1 (MQ=255)

                                                                     cAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTcc                       >  2:233399/1‑91 (MQ=255)

                                                                      aaTTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCct                      >  1:1784640/1‑91 (MQ=255)

                                                                      aaTTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCct                      >  1:739371/1‑91 (MQ=255)

                                                                        ttGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCctgc                    >  1:3802361/1‑91 (MQ=255)

                                                                        ttGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCctgc                    <  1:2956803/91‑1 (MQ=255)

                                                                         tGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCctgct                   <  2:555890/91‑1 (MQ=255)

                                                                          gCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCctgctg                  >  1:3894273/1‑91 (MQ=255)

                                                                          gCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCctgctg                  <  1:3193849/91‑1 (MQ=255)

                                                                          gCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTAGCCGTCctgctg                  >  1:3582307/1‑91 (MQ=255)

                                                                            aGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGAt                >  1:2538783/1‑91 (MQ=255)

                                                                            aGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGAt                <  2:3781732/91‑1 (MQ=255)

                                                                             gTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATg               >  1:886097/1‑91 (MQ=255)

                                                                             gTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATg               >  1:2595181/1‑91 (MQ=255)

                                                                             gTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATg               <  1:1756382/91‑1 (MQ=255)

                                                                             gTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATg               <  1:26681/91‑1 (MQ=255)

                                                                                ggTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGGGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTa            <  2:1862851/91‑1 (MQ=255)

                                                                                ggTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTa            >  2:2059615/1‑91 (MQ=255)

                                                                                ggTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTa            >  2:2316311/1‑91 (MQ=255)

                                                                                ggTGAAGATGGTCCTACTCATGAACCAATTGAGAAATTAGCTGGATTAAGAGCCAGTCCAAATATGAATGTTATCCGTCATGCTGATGGTa            >  2:3561010/1‑91 (MQ=255)

                                                                                 gtgaagatgGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTaa           >  1:2982987‑M2/10‑91 (MQ=255)

                                                                                   gaagatgGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTAATg         <  1:709738‑M2/84‑1 (MQ=255)

                                                                                   gaagatgGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTAATg         >  1:2107810‑M2/8‑91 (MQ=255)

                                                                                   gaagatgGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTAATg         <  1:1512777‑M2/84‑1 (MQ=255)

                                                                                    aagatgGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTAATGa        >  2:285042‑M2/7‑91 (MQ=255)

                                                                                     agatgGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTAATGaa       >  2:1615417‑M2/6‑91 (MQ=255)

                                                                                     agatgGTCCTACTCATGAACCAATTGAGCAATGAGCTGGATTAAGAGCCATTCCAATTATGAATGGTATCCGTCCTGCTGATGGTAATGaa       <  2:939525‑M2/86‑1 (MQ=255)

                                                                                      gatgGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTAATCaaa      >  1:3065228‑M2/5‑91 (MQ=255)

                                                                                       atgGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTAATGAAAc     >  1:1656391‑M2/4‑91 (MQ=255)

ATTTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTAATGAAACAAG  >  USA300TCH1516_ALE/1371786‑1371966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.