BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1392266 =	231 (1.130)	13 (0.070)	9/140	NT	6.7%	intergenic (+40/‑460)	alsT/glcT	Amino‑acid carrier protein AlsT/GlcA/glcB genes antiterminator
*	?	USA300TCH1516_ALE	1392308 =	162 (0.910)	13 (0.070)	9/140	NT	6.7%	intergenic (+82/‑418)	alsT/glcT	Amino‑acid carrier protein AlsT/GlcA/glcB genes antiterminator

Only 100 of 279 total aligned reads displayed.

GATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGATTTATTTCC  >  USA300TCH1516_ALE/1392218‑1392398

gATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGtttt                                                                                            <  2:1845957/91‑1 (MQ=255)

gATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGtttt                                                                                            >  1:2926353/1‑91 (MQ=255)

gATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGtttt                                                                                            <  1:2646276/91‑1 (MQ=255)

 ataaataaATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTa                                                                                           >  2:2383254/1‑91 (MQ=255)

  taaataaaTATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTaa                                                                                          <  2:2783578/91‑1 (MQ=255)

  taaataaaTATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAAACCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTaa                                                                                          >  2:3485911/1‑91 (MQ=255)

   aaataaatATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTaaa                                                                                         >  2:923626/1‑91 (MQ=255)

   aaataaatATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTaaa                                                                                         <  2:3378401/91‑1 (MQ=255)

   aaataaatATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTaaa                                                                                         <  1:2177642/91‑1 (MQ=255)

     ataaataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAGGCGAATATCTCAGGGTTTTAAAtt                                                                                       <  1:664529/91‑1 (MQ=255)

     ataaataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAAtt                                                                                       <  1:2029164/91‑1 (MQ=255)

     ataaataTTTTTAATGTAACGATACATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAAtt                                                                                       <  1:1075661/91‑1 (MQ=255)

       aaataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTg                                                                                     <  1:2293554/91‑1 (MQ=255)

        aataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGt                                                                                    >  2:739979/1‑91 (MQ=255)

        aataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGt                                                                                    >  2:2336547/1‑91 (MQ=255)

        aataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGt                                                                                    >  2:356146/1‑91 (MQ=255)

        aataTTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGt                                                                                    <  2:299553/91‑1 (MQ=255)

         atatTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTa                                                                                   <  2:1599722/91‑1 (MQ=255)

          tatTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTaa                                                                                  <  2:2278824/91‑2 (MQ=255)

           atTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACt                                                                                 <  1:819549/91‑1 (MQ=255)

           atTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACt                                                                                 >  1:323933/1‑91 (MQ=255)

              tttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCaa                                                                              >  2:1878176/1‑91 (MQ=255)

              tttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCaa                                                                              <  1:2346310/91‑1 (MQ=255)

              tttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCaa                                                                              >  2:433075/1‑91 (MQ=255)

               ttAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAAt                                                                             <  1:3831421/91‑1 (MQ=255)

                 aaTGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTa                                                                           <  1:1225899/91‑1 (MQ=255)

                  aTGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTTAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTat                                                                          >  2:565719/1‑91 (MQ=255)

                    gTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTatca                                                                        >  1:1806750/1‑91 (MQ=255)

                    gTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTatca                                                                        <  1:507333/91‑1 (MQ=255)

                      aaCGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTatcatc                                                                      >  2:251771/1‑91 (MQ=255)

                          aTTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTa                                                                  >  1:2041679/1‑91 (MQ=255)

                             cATTATATAAAAATCAAATAATCCCTGGGGTTTTCAAATTAAAGCGAAAATATCAGGGTTTTAAATTTGTACTCAATTATAATCTGTATCa                                                               >  2:244967/1‑91 (MQ=255)

                             cATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCa                                                               <  2:858922/91‑1 (MQ=255)

                                  tatgaaaataaaatAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTaca                                                          <  1:3554254/87‑1 (MQ=255)

                                     aaaaaTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTAGACTa                                                       <  1:3121014/91‑1 (MQ=255)

                                     aaaaaTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTa                                                       >  1:2575621/1‑91 (MQ=255)

                                      aaaaTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAg                                                      <  1:211024/91‑1 (MQ=255)

                                      aaaaTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAg                                                      <  2:1731231/91‑1 (MQ=255)

                                       aaaTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGt                                                     >  2:3198296/1‑91 (MQ=255)

                                       aaaTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGt                                                     >  2:290263/1‑91 (MQ=255)

                                       aaaTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGt                                                     >  1:1019062/1‑91 (MQ=255)

                                       aaaTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGt                                                     >  1:1902818/1‑91 (MQ=255)

                                       aaaTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTCGTACTCAATTATCATCTGTATCATTACACTAGt                                                     >  1:3235465/1‑91 (MQ=255)

                                       aaaTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAACCTCAGGCTTTTAAATTTGTACTCAACAATCATCTGCATCATTACACTAGt                                                     >  2:3670168/1‑91 (MQ=255)

                                        aaTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGtt                                                    >  1:362583/1‑91 (MQ=255)

                                        aaTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGtt                                                    >  1:1109183/1‑91 (MQ=255)

                                         aTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTa                                                   >  1:1996636/1‑91 (MQ=255)

                                         aTCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTa                                                   >  2:2204776/1‑91 (MQ=255)

                                           cAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAAt                                                 <  1:3263846/91‑1 (MQ=255)

                                            aaaTAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATc                                                >  1:3571681/1‑91 (MQ=255)

                                             aaTAAACCCTGAGGTTTTCACATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCt                                               >  2:1394415/1‑91 (MQ=255)

                                             aaTAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCt                                               >  1:1660040/1‑91 (MQ=255)

                                               tAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTaa                                             <  2:1271252/91‑1 (MQ=255)

                                                AAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAg                                            <  2:1423129‑M1/91‑1 (MQ=255)

                                                AAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAg                                            <  1:3664479‑M1/91‑1 (MQ=255)

                                                AAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAg                                            <  2:79141‑M1/91‑1 (MQ=255)

                                                AAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACACAATTATCATCTGTATCATTACACTAGTTAATCTAAg                                            >  2:762743‑M1/1‑91 (MQ=255)

                                                 AACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGa                                           >  2:1139007‑M1/1‑91 (MQ=255)

                                                 AACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGa                                           >  1:2554814‑M1/1‑91 (MQ=255)

                                                 AACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGa                                           >  2:1971620‑M1/1‑91 (MQ=255)

                                                  ACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGAt                                          >  2:2052596‑M1/1‑91 (MQ=255)

                                                       GAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGAt                                     <  1:3887976‑M1/91‑1 (MQ=255)

                                                       GAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGAt                                     <  2:2765686‑M1/91‑1 (MQ=255)

                                                       GAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGAt                                     <  2:2599345‑M1/91‑1 (MQ=255)

                                                       GAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGAt                                     <  2:526724‑M1/91‑1 (MQ=255)

                                                       GAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGAt                                     <  1:463157‑M1/91‑1 (MQ=255)

                                                       GAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCACTACACTAGTTAATCTAAGATTTGAt                                     <  1:3666163‑M1/91‑1 (MQ=255)

                                                          gTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATtat                                  <  1:3185042/91‑1 (MQ=255)

                                                            tttCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATtatat                                <  2:1954628/91‑1 (MQ=255)

                                                             ttCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATtatata                               >  1:1357940/1‑91 (MQ=255)

                                                              tcgctttaatttgaaaacctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTatatat                              >  2:2695741‑M2/29‑91 (MQ=255)

                                                               cgctttaatttgaaaacctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATAtt                             >  2:1560275‑M2/28‑91 (MQ=255)

                                                               cAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATAtt                             <  1:2758085/91‑1 (MQ=255)

                                                               aaaaTTATAGCGAGTATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATAtttt                             <  2:1375134/90‑1 (MQ=255)

                                                                 ctttaatttgaaaacctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTaa                           >  1:2969634‑M2/26‑91 (MQ=255)

                                                                  aTTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAat                          <  1:1314868/91‑1 (MQ=255)

                                                                   ttaatttgaaaacctcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAata                         >  1:1592934‑M2/24‑91 (MQ=255)

                                                                    tAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAatat                        <  2:302945/91‑1 (MQ=255)

                                                                    tAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAatat                        <  2:3225825/91‑1 (MQ=255)

                                                                     aaaGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAAtata                       <  1:2618587/91‑1 (MQ=255)

                                                                           aaaaTCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAgg                 <  1:1489227/91‑1 (MQ=255)

                                                                           aaaaTCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAgg                 >  2:417753/1‑91 (MQ=255)

                                                                            aaaTCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGt                >  2:3137056/1‑91 (MQ=255)

                                                                             taTCTCATGGTTTTAAATTTGTACTCAATTATTATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGtt               <  2:2718237/90‑1 (MQ=255)

                                                                              aTCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTg              <  2:878901/91‑1 (MQ=255)

                                                                                 tcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTgaga           >  1:3939974‑M2/10‑91 (MQ=255)

                                                                                 tcagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTgaga           >  1:279071‑M2/10‑91 (MQ=255)

                                                                                  cagggtttTAAATTTGTACTCAATTATCGTGTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGat          <  2:2014125‑M2/83‑1 (MQ=255)

                                                                                  cagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGCTTTGATTCTATATTACTATAGTAAGGTTGAGat          >  2:232518‑M2/9‑91 (MQ=255)

                                                                                  cagggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGat          >  2:2626713‑M2/9‑91 (MQ=255)

                                                                                   agtttttTAAATTTGTGCTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGatt         <  2:3787845‑M2/84‑1 (MQ=255)

                                                                                   agggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTACTCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGatt         >  2:3463484‑M2/8‑91 (MQ=255)

                                                                                   agggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGatt         <  1:74466‑M2/84‑1 (MQ=255)

                                                                                    gggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGattt        >  1:2485878‑M2/7‑91 (MQ=255)

                                                                                    gggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGattt        >  1:2485762‑M2/7‑91 (MQ=255)

                                                                                    gggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGattt        <  1:128315‑M2/85‑1 (MQ=255)

                                                                                     ggtttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTGAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGattta       <  2:1202840‑M2/86‑1 (MQ=255)

                                                                                       tttTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGatttatt     <  2:1800945‑M2/88‑1 (MQ=255)

                                                                                          tAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGATTTATTtcc  <  1:2997811/91‑1 (MQ=255)

                                                                                          tAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGATTTATTtcc  >  1:3710732/1‑91 (MQ=255)

GATAAATAAATATTTTTAATGTAACGATTCATTATATAAAAATCAAATAAACCCTGAGGTTTTCAAATTAAAGCGAAAATCTCAGGGTTTTAAATTTGTACTCAATTATCATCTGTATCATTACACTAGTTAATCTAAGATTTGATTATATATTAATATAGTAAGGTTGAGATTTATTTCC  >  USA300TCH1516_ALE/1392218‑1392398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.