BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1394924 =	166 (0.810)	14 (0.080)	5/132	NT	9.1%	intergenic (+4/‑477)	tqsA/mprF	AI‑2 transport protein TqsA/Phosphatidylglycerol lysyltransferase
*	?	USA300TCH1516_ALE	1394966 =	144 (0.860)	14 (0.080)	5/132	NT	9.1%	intergenic (+46/‑435)	tqsA/mprF	AI‑2 transport protein TqsA/Phosphatidylglycerol lysyltransferase

Only 100 of 281 total aligned reads displayed.

GTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAGCCGTTTATAAAGCAC  >  USA300TCH1516_ALE/1394876‑1395056

  aGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGt                                                                                          >  2:2382932/1‑91 (MQ=255)

   ggTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTg                                                                                         <  1:2512547/91‑1 (MQ=255)

     tGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCt                                                                                       <  2:714777/91‑1 (MQ=255)

     tGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTCTTTATGGTGCt                                                                                       >  1:3580915/1‑91 (MQ=255)

      gAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCtt                                                                                      >  2:3013704/1‑91 (MQ=255)

      gAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCtt                                                                                      <  1:665309/91‑1 (MQ=255)

       aaTATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTta                                                                                     >  2:2087393/1‑91 (MQ=255)

         tatGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTtata                                                                                   >  2:1202113/1‑91 (MQ=255)

          atGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATaa                                                                                  >  1:2858503/1‑91 (MQ=255)

            gATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATg                                                                                <  1:275688/91‑1 (MQ=255)

              tatTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGtt                                                                              >  2:162461/1‑91 (MQ=255)

               atTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTg                                                                             >  1:3769054/1‑91 (MQ=255)

               atTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTg                                                                             <  1:3090208/91‑1 (MQ=255)

               atTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAAAGACAATAAGGATGTTGGTATTATTTATGGAGCTTATAATGTTg                                                                             >  2:1004381/1‑91 (MQ=255)

                 tAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTggg                                                                           <  2:2541557/91‑1 (MQ=255)

                 tAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTggg                                                                           <  1:17833/91‑1 (MQ=255)

                 tAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTggg                                                                           <  2:1432484/91‑1 (MQ=255)

                  aaagaaagTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGc                                                                          >  1:3693194/1‑91 (MQ=255)

                     gaacgTAATAAAATAGTTGAATAAGTAATAAAAAATGCCAATGCCTATATGTTTGTTGGTATTTATTATGGTGCTTATAATGTTGGGCAGt                                                                       <  2:3419356/91‑1 (MQ=255)

                     gaaagTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGt                                                                       <  1:1790634/91‑1 (MQ=255)

                     gaaagTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGt                                                                       >  1:2346294/1‑91 (MQ=255)

                         gTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACa                                                                   <  2:2457012/91‑1 (MQ=255)

                          taataaAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACAt                                                                  >  1:3280750/1‑91 (MQ=255)

                          taataaAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACAt                                                                  >  2:1705495/1‑91 (MQ=255)

                          taataaAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACAt                                                                  >  1:2674964/1‑91 (MQ=255)

                           aataaAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACAtt                                                                 >  1:3001167/1‑91 (MQ=255)

                            ataaAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACAttt                                                                <  1:2885061/91‑1 (MQ=255)

                            ataaAATAGTTGAATAAGTAAT‑AAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACAtttt                                                               >  2:3871480/1‑90 (MQ=255)

                             taaAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTa                                                               >  1:3033311/1‑91 (MQ=255)

                             taaAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTa                                                               >  1:2228249/1‑91 (MQ=255)

                              aaaaTAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTAt                                                              >  2:2607775/1‑91 (MQ=255)

                                aaTAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGa                                                            >  1:915203/1‑91 (MQ=255)

                                 aTAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGAt                                                           >  2:3693471/1‑91 (MQ=255)

                                   aGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTa                                                         >  1:2478410/1‑91 (MQ=255)

                                    gTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTAt                                                        >  1:3846543/1‑91 (MQ=255)

                                     ttGAATAAGTAATAAAAAATACCAATAACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATc                                                       >  2:2244984/1‑91 (MQ=255)

                                      tGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCa                                                      >  1:2009283/1‑91 (MQ=255)

                                       gAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAg                                                     >  2:1532894/1‑91 (MQ=255)

                                        aaTAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGc                                                    >  1:378292/1‑91 (MQ=255)

                                         aTAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGca                                                   <  1:3249215/91‑1 (MQ=255)

                                         aTAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGca                                                   <  2:1152413/91‑1 (MQ=255)

                                              taataaAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGt                                              >  1:2097423/1‑91 (MQ=255)

                                              taataaAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGt                                              >  2:802880/1‑91 (MQ=255)

                                               aataaAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGtt                                             <  2:2576147/91‑1 (MQ=255)

                                               aataaAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGtt                                             >  1:2550007/1‑91 (MQ=255)

                                                ATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGttt                                            <  1:3535622‑M1/91‑1 (MQ=255)

                                                ATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGttt                                            >  2:327081‑M1/1‑91 (MQ=255)

                                                ATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGttt                                            <  1:2919919‑M1/91‑1 (MQ=255)

                                                  aaaaaataccaacaaacatatagtcattggtattttttatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAg                                          >  2:409468‑M2/41‑91 (MQ=255)

                                                  AAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTTTAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAg                                          <  2:876816‑M1/91‑1 (MQ=255)

                                                   AAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGc                                         <  1:3651471‑M1/91‑1 (MQ=255)

                                                   AAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGc                                         <  2:434555‑M1/91‑1 (MQ=255)

                                                   AAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGAAGTTACATTTCTGATTATCAGCACATGTTTAGc                                         <  2:1841200‑M1/91‑1 (MQ=255)

                                                    AAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCt                                        >  1:581570‑M1/1‑91 (MQ=255)

                                                    AAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCt                                        <  2:2325524‑M1/91‑1 (MQ=255)

                                                     aaataccaacaaacatatagtcattggtattttttatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCtt                                       >  1:3858587‑M2/38‑91 (MQ=255)

                                                     AAATACCAATGACTGTATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTGACATTTATGATTATCAGCACATGTTTAGCtt                                       >  2:2661248‑M1/1‑91 (MQ=255)

                                                      aataccaacaaacatatagtcatcggtattttttatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTta                                      >  2:695665‑M2/37‑91 (MQ=255)

                                                      AATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTta                                      <  2:3872473‑M1/91‑1 (MQ=255)

                                                       ATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTtat                                     >  2:1261395‑M1/1‑91 (MQ=255)

                                                       ATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTtat                                     >  2:1036989‑M1/1‑91 (MQ=255)

                                                        taccaacaaacatatagtcattggtattttttatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTtata                                    >  2:465227‑M2/35‑91 (MQ=255)

                                                        taccaacaaacatatagtcattggtattttttatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTtata                                    >  1:80104‑M2/35‑91 (MQ=255)

                                                        taccaacaaacatatagtcattggtattttttatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTtata                                    >  1:1257779‑M2/35‑91 (MQ=255)

                                                        taccaacaaacatatagtcattggtattttttatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTtata                                    >  1:961888‑M2/35‑91 (MQ=255)

                                                        taccaacaaacatatagtcattggtattttttatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTtata                                    >  1:3443484‑M2/35‑91 (MQ=255)

                                                        TACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTtata                                    <  1:1104358‑M1/91‑1 (MQ=255)

                                                          CCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCATATAATGTTGGGCGGTTACATTTATGACTATCAGCACATGTTTAGCTCATaaa                                  <  1:3669696‑M1/91‑1 (MQ=255)

                                                            AATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAGTGTTGGGAAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAAtt                                <  2:1916696‑M1/91‑1 (MQ=255)

                                                            AATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAAtt                                <  1:1045839‑M1/91‑1 (MQ=255)

                                                             ATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAAttt                               <  2:3601041‑M1/91‑1 (MQ=255)

                                                               gACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAAttttt                             >  1:3112047/1‑91 (MQ=255)

                                                                 cTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTAc                           <  1:3920666/91‑1 (MQ=255)

                                                                  tataTGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACg                          <  2:1764137/91‑1 (MQ=255)

                                                                  tataTGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACg                          <  1:3273959/91‑1 (MQ=255)

                                                                  tataTGTTTGTTGGTATTTTATATGGTGCTTATAATGTTGGGCAGTTACATATATGATAATCAGCACATGTTTAGCTTAGAAATTGTTACg                          <  2:2781224/91‑1 (MQ=255)

                                                                  tataAGTTTGTTTGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACg                          <  2:748592/91‑1 (MQ=255)

                                                                      tgtttgttGGTATTTTTTATGGTGCTTATTATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAg                      <  2:3525845/91‑1 (MQ=255)

                                                                      tgtttgttGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAg                      >  2:3175622/1‑91 (MQ=255)

                                                                       gtttgttGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGt                     <  1:1224847/91‑1 (MQ=255)

                                                                       gtttgttGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGt                     >  1:76237/1‑91 (MQ=255)

                                                                          tgttgGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTa                  >  2:2472285/1‑91 (MQ=255)

                                                                           gttgGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAg                 >  2:1633106/1‑91 (MQ=255)

                                                                           gttgGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAg                 <  2:3778979/91‑1 (MQ=255)

                                                                           gttgGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTAT‑AATTTTTACGAAAGTTTAGc                >  2:2426828/1‑91 (MQ=255)

                                                                            ttggtattttttatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAGc                <  1:2630431‑M2/77‑1 (MQ=255)

                                                                              ggtattttttatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAGCCg              <  2:3403361‑M2/79‑1 (MQ=255)

                                                                              ggtattttttatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAGCCg              <  1:126858‑M2/79‑1 (MQ=255)

                                                                                tattttttatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAGCCGtt            <  2:364340‑M2/81‑1 (MQ=255)

                                                                                tattttttatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAGCCGtt            <  2:1377538‑M2/81‑1 (MQ=255)

                                                                                 attttttatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAGCCGttt           <  1:1692877‑M2/82‑1 (MQ=255)

                                                                                    ttttatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAGCCGTTtata        >  1:1671043‑M2/7‑91 (MQ=255)

                                                                                     tttatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAGCCGTTTATaa       <  2:1826264‑M2/86‑1 (MQ=255)

                                                                                     tttatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAGCCGTTTATaa       <  1:635926‑M2/86‑1 (MQ=255)

                                                                                      ttatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAGCCGTTTATaaa      >  1:1468882‑M2/5‑91 (MQ=255)

                                                                                       tatGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAGCCGTTTATAAAg     >  1:3709069‑M2/4‑91 (MQ=255)

                                                                                        atGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAGCCGTTTATAAAGc    >  1:2410263‑M2/3‑91 (MQ=255)

                                                                                        atGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAGCCGTTTATAAAGc    >  1:1405744‑M2/3‑91 (MQ=255)

                                                                                         tGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAGCCGTTTATAAAGCa   >  1:434930‑M2/2‑91 (MQ=255)

                                                                                          ggTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAGCCGTTTATAAAGcac  <  1:1566213/91‑1 (MQ=255)

GTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAGCCGTTTATAAAGCAC  >  USA300TCH1516_ALE/1394876‑1395056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.