BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1435387 =	198 (0.970)	19 (0.110)	11/140	NT	11.2%	intergenic (+24/‑119)	dapH/yxeP_3	2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase/putative hydrolase YxeP
*	?	USA300TCH1516_ALE	1435417 =	129 (0.730)	19 (0.110)	11/140	NT	11.2%	intergenic (+54/‑89)	dapH/yxeP_3	2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase/putative hydrolase YxeP

Only 100 of 208 total aligned reads displayed.

GAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAACACAAAGGATTGATAATTAT  >  USA300TCH1516_ALE/1435328‑1435507

gagaTTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTAt                                                                                           >  2:2323647/1‑91 (MQ=255)

ataaatagtgtaacgtatttcgaaatttgtgatcataagtttattcaatgctaaacaatAAGGTTGAGATACGATTATCTCTCAACCTTAt                                                                                           >  1:3033136‑M1/60‑91 (MQ=255)

  gaTTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTg                                                                                         <  2:839285/91‑1 (MQ=255)

  gaTTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTg                                                                                         <  2:1630204/91‑1 (MQ=255)

  gaTTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTg                                                                                         <  1:2076202/91‑1 (MQ=255)

   aTTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGt                                                                                        <  2:5826/91‑1 (MQ=255)

    ttGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGtt                                                                                       >  1:1284983/1‑91 (MQ=255)

      gTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTa                                                                                     >  1:1165663/1‑91 (MQ=255)

      gTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTa                                                                                     >  1:2920175/1‑91 (MQ=255)

        agcagcATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGc                                                                                   >  2:2763514/1‑91 (MQ=255)

          cagcaTTTAGAAAACTGAATGGCTAGGGACGTCAACGTATAATAATTGCAAGATTGAGATACGATTATGTCTCAACCTTATTGTTTAGCAt                                                                                 <  2:3519803/91‑1 (MQ=255)

              aTTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGaa                                                                             <  1:2332084/91‑1 (MQ=255)

              aTTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGaa                                                                             <  1:1875073/91‑1 (MQ=255)

               ttAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAAt                                                                            <  2:2087205/91‑1 (MQ=255)

               ttAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAAt                                                                            >  2:2729211/1‑91 (MQ=255)

                tAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATa                                                                           <  1:1466110/91‑1 (MQ=255)

                  aGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATaaa                                                                         >  1:3195481/1‑91 (MQ=255)

                   gAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAAc                                                                        >  1:3885097/1‑91 (MQ=255)

                     aaaCTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACtt                                                                      <  2:1048616/91‑1 (MQ=255)

                       aCTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTAt                                                                    >  2:863927/1‑91 (MQ=255)

                        cTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATg                                                                   >  2:3215346/1‑91 (MQ=255)

                         tGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGa                                                                  >  2:2831493/1‑91 (MQ=255)

                          gAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGAt                                                                 <  1:3849713/91‑1 (MQ=255)

                           aaTGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATc                                                                >  2:2872456/1‑91 (MQ=255)

                           aaTGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATc                                                                <  2:644149/91‑1 (MQ=255)

                           aaTGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATc                                                                >  1:1642274/1‑91 (MQ=255)

                           aaTGACGAGTGACGTCAACGTATATTAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATc                                                                <  2:3668108/91‑1 (MQ=255)

                            aTGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATca                                                               <  2:2297596/91‑1 (MQ=255)

                            aTGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATca                                                               <  1:3066633/91‑1 (MQ=255)

                            aTGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATca                                                               <  1:3067270/91‑1 (MQ=255)

                             tGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATcac                                                              >  1:2813828/1‑91 (MQ=255)

                              gACTCGTGACGTCAACGTATAATAATTTCAAGGTGGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATcaca                                                             <  2:1459032/91‑1 (MQ=255)

                              gACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATcaca                                                             <  1:556384/91‑1 (MQ=255)

                              gACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATcaca                                                             <  1:2786299/91‑1 (MQ=255)

                              gACTAGTGACGTCAACGTATAATAAATTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATcaca                                                             <  1:3682977/91‑1 (MQ=255)

                               aCTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACaa                                                            >  2:1798909/1‑91 (MQ=255)

                                 tAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAAt                                                          <  2:2227905/91‑1 (MQ=255)

                                 tAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGAGTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAAt                                                          <  2:3479949/91‑1 (MQ=255)

                                      aCGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGa                                                     <  1:2347478/91‑1 (MQ=255)

                                      aCGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGa                                                     <  1:252233/91‑1 (MQ=255)

                                       cGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGaa                                                    >  2:389530/1‑91 (MQ=255)

                                        gTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGaaa                                                   <  2:3311465/91‑1 (MQ=255)

                                          cAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATa                                                 >  2:1742010/1‑91 (MQ=255)

                                            aCGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACg                                               >  1:3605435/1‑91 (MQ=255)

                                            aCGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACg                                               <  2:492968/91‑1 (MQ=255)

                                            aCGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACg                                               >  2:1304189/1‑91 (MQ=255)

                                            aCGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACg                                               >  1:992602/1‑91 (MQ=255)

                                            aCGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACg                                               >  1:2663162/1‑91 (MQ=255)

                                             cGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATTACAAATTTCGAAATACGt                                              >  1:245559/1‑91 (MQ=255)

                                             cGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGt                                              <  2:2609980/91‑1 (MQ=255)

                                             cGTATAATAATTGCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGt                                              <  2:2952451/91‑1 (MQ=255)

                                               tataATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTa                                            <  2:982975/91‑1 (MQ=255)

                                               tataATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTa                                            >  1:3921221/1‑91 (MQ=255)

                                                ataataATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTac                                           <  2:3167791/91‑1 (MQ=255)

                                                 taataaTTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTaca                                          >  2:189468/1‑91 (MQ=255)

                                                 taataaTTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTaca                                          >  1:3306688/1‑91 (MQ=255)

                                                  aataatTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTacac                                         <  2:211939/91‑1 (MQ=255)

                                                   ataatTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACt                                        >  2:786495/1‑91 (MQ=255)

                                                    taatTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTa                                       >  2:1284712/1‑91 (MQ=255)

                                                    aaacaatAAGGTTGAGACATAATCGTATCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTa                                       <  2:1734687‑M1/84‑1 (MQ=255)

                                                     aatTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTAt                                      >  2:2482870/1‑91 (MQ=255)

                                                     aatTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTAt                                      >  2:251956/1‑91 (MQ=255)

                                                      atTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTAtt                                     >  1:3444720/1‑91 (MQ=255)

                                                        ttCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTta                                   >  2:2370222/1‑91 (MQ=255)

                                                         tCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTtat                                  >  1:2785910/1‑91 (MQ=255)

                                                          cAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTtata                                 <  1:108882/91‑1 (MQ=255)

                                                           aaggttgagacataatcgtatctcaaccttATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTtatat                                >  1:2501899‑M2/31‑91 (MQ=255)

                                                           AAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTtatat                                >  2:151225‑M1/1‑91 (MQ=255)

                                                            AGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTtatata                               <  2:1968560‑M1/91‑1 (MQ=255)

                                                            AGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTtatata                               >  2:1577964‑M1/1‑91 (MQ=255)

                                                            AGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTtatata                               <  2:1177823‑M1/91‑1 (MQ=255)

                                                            AGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTtatata                               >  2:2504727‑M1/1‑91 (MQ=255)

                                                            AGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTtatata                               >  1:2169102‑M1/1‑91 (MQ=255)

                                                             GGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAg                              <  2:243908‑M1/91‑1 (MQ=255)

                                                             GGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAg                              <  1:2778453‑M1/91‑1 (MQ=255)

                                                             GGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAg                              >  1:738258‑M1/1‑91 (MQ=255)

                                                                tgagacataatcgtatctcaaccttATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTaa                           >  1:3539441‑M2/26‑91 (MQ=255)

                                                                TGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTaa                           <  2:3590759‑M1/91‑1 (MQ=255)

                                                                 gagacataatcgtatctcaaccttATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAAt                          >  1:1334687‑M2/25‑91 (MQ=255)

                                                                 GAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAAt                          <  1:1522599‑M1/91‑1 (MQ=255)

                                                                  AGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAAtt                         >  2:735524‑M1/1‑91 (MQ=255)

                                                                  AGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAAtt                         <  1:977520‑M1/91‑1 (MQ=255)

                                                                     cataatcgtatctcaaccttATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTaa                      >  1:808505‑M2/21‑91 (MQ=255)

                                                                     cataatcgtatctcaaccttATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTaa                      >  2:3826208‑M2/21‑91 (MQ=255)

                                                                      ataatcgtatctcaaccttATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAac                     >  1:196517‑M2/20‑91 (MQ=255)

                                                                      aCGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAac                     >  1:1814277/1‑91 (MQ=255)

                                                                       cGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAaca                    <  2:500017/91‑1 (MQ=255)

                                                                       cGATTATGTCTCAACCTTATTGTTCAGCATTGAAAAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAaca                    >  2:344269/1‑91 (MQ=255)

                                                                         aTTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAAcaca                  >  1:2952091/1‑91 (MQ=255)

                                                                          ttATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAACACaa                 <  1:525843/91‑1 (MQ=255)

                                                                          ttATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGCTACACTATTTATATAGTAATTTAACACaa                 >  2:2318069/1‑91 (MQ=255)

                                                                            aTGTCTCAACCGTATTGTTTAGCTTTGAATAAACTTATGATCACAAATTTCGAAATACGGTACACTATTTATATAGTAATTTAACACAAAg               <  2:3019166/91‑1 (MQ=255)

                                                                              gTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAACACAAAGGa             <  1:1559672/91‑1 (MQ=255)

                                                                               tctcaaccttATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAACACAAAGGAt            >  1:2188368‑M2/11‑91 (MQ=255)

                                                                               tctcaaccttATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAACACAAAGGAt            <  1:1014629‑M2/81‑1 (MQ=255)

                                                                                  caaccttATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAACACAAAGGATTGa         <  1:2239552‑M2/84‑1 (MQ=255)

                                                                                    accttATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAACACAAAGGATTGATa       >  1:2613168‑M2/6‑91 (MQ=255)

                                                                                     ccttATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAACACAAAGGATTGATaa      >  1:1704848‑M2/5‑91 (MQ=255)

                                                                                        tATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAACACAAAGGATTGATAATTa   <  2:1138745‑M2/90‑1 (MQ=255)

                                                                                         aTTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAACACAAAGGATTGATAATTat  <  1:1459349/91‑1 (MQ=255)

GAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAACACAAAGGATTGATAATTAT  >  USA300TCH1516_ALE/1435328‑1435507

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.