New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1507967 =201 (0.990)20 (0.120) 12/128 NT 12.6% intergenic (‑392/+83) ald1/ypcP Alanine dehydrogenase 1/5'‑3' exonuclease
?USA300TCH1516_ALE 1508010 = 116 (0.710)intergenic (‑435/+40) ald1/ypcP Alanine dehydrogenase 1/5'‑3' exonuclease

Only 100 of 260 total aligned reads displayed.

CTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCGTT  >  USA300TCH1516_ALE/1507920‑1508100
                                                                                          |                                                                                          
ctatcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTta                                                                                            >  2:2591048/1‑91 (MQ=255)
ctatcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTta                                                                                            >  2:189384/1‑91 (MQ=255)
 tatcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTtat                                                                                           <  1:1148054/91‑1 (MQ=255)
 tatcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTtat                                                                                           <  1:3455511/91‑1 (MQ=255)
  atcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTtata                                                                                          <  1:1630485/91‑1 (MQ=255)
   tcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATAc                                                                                         >  1:465352/1‑91 (MQ=255)
      aaaTTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTa                                                                                      <  1:228649/91‑1 (MQ=255)
      aaaTTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTaa                                                                                     >  2:2975307/1‑91 (MQ=255)
       aaTTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTaa                                                                                     <  1:872870/91‑1 (MQ=255)
       aaTTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTaa                                                                                     >  2:688455/1‑91 (MQ=255)
        aTTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAAt                                                                                    >  2:2506441/1‑91 (MQ=255)
          tCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTg                                                                                  <  2:3421582/91‑1 (MQ=255)
           cGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTgg                                                                                 <  2:1368601/91‑1 (MQ=255)
           cGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTgg                                                                                 >  1:2155957/1‑91 (MQ=255)
            ggCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGt                                                                                >  2:3061886/1‑91 (MQ=255)
            ggCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGt                                                                                <  2:2194023/91‑1 (MQ=255)
             gCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGtt                                                                               <  1:1355530/91‑1 (MQ=255)
             gCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGtt                                                                               >  2:2312776/1‑91 (MQ=255)
             gCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGtt                                                                               <  1:1961822/91‑1 (MQ=255)
             gCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGtt                                                                               <  2:647971/91‑1 (MQ=255)
              cTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGttt                                                                              >  2:546859/1‑91 (MQ=255)
              cTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGttt                                                                              <  1:1789490/91‑1 (MQ=255)
                  tttattCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAAtt                                                                          <  1:2840946/91‑1 (MQ=255)
                   ttattCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAAttt                                                                         >  2:3858919/1‑91 (MQ=255)
                    tattCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAAtttt                                                                        >  1:2240463/1‑91 (MQ=255)
                      ttCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTc                                                                      >  2:749038/1‑91 (MQ=255)
                      ttCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTc                                                                      <  1:281210/91‑1 (MQ=255)
                       tCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTAGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCa                                                                     <  1:3945406/91‑1 (MQ=255)
                        cACTCTGACATCTCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCAt                                                                    >  2:210099/1‑91 (MQ=255)
                         aCTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATa                                                                   <  1:3570672/91‑1 (MQ=255)
                             tGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAAt                                                               >  2:1254261/1‑91 (MQ=255)
                              gACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATc                                                              >  1:2486099/1‑91 (MQ=255)
                               aCATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCt                                                             <  1:1298257/91‑1 (MQ=255)
                                cATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCtt                                                            >  2:3695506/1‑91 (MQ=255)
                                    tCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAc                                                        >  1:91380/1‑91 (MQ=255)
                                     ccAGATGCGCAAAAAGACTATTTCTACCTATTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACt                                                       <  2:2543225/91‑1 (MQ=255)
                                     ccAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACt                                                       <  2:2028099/91‑1 (MQ=255)
                                      cAAATACGCAAAAAGAGTATTTCTACCTTGTATCGATAGAAATAGTCTTATTATACTTACTGGGTTTAATTTTTCGTCAATCTTAGACttt                                                     >  2:80288/1‑91 (MQ=255)
                                      cAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACtt                                                      <  1:3633078/91‑1 (MQ=255)
                                       aaaTACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACttt                                                     <  1:1765971/91‑1 (MQ=255)
                                        aaTACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACtttt                                                    <  1:606017/91‑1 (MQ=255)
                                         aTACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACttttt                                                   <  1:2336715/91‑1 (MQ=255)
                                          tACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTa                                                  >  1:2522860/1‑91 (MQ=255)
                                            cGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTaaa                                                >  1:3271067/1‑91 (MQ=255)
                                            cGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTaaa                                                >  1:2950752/1‑91 (MQ=255)
                                            cGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAAGTTTTCATAAAATCTTATACTTTTTaaa                                                <  2:509509/91‑1 (MQ=255)
                                             gCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATTTTATACTTTTTtaaa                                               <  1:143808/91‑1 (MQ=255)
                                             gCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTaaaa                                               >  1:1376463/1‑91 (MQ=255)
                                             gCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTaaaa                                               <  1:78215/91‑1 (MQ=255)
                                             gCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTaaaa                                               <  1:414674/91‑1 (MQ=255)
                                              cAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTaaaaa                                              >  1:3313261/1‑91 (MQ=255)
                                               AAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTACTTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAAt                                             <  2:2462137‑M1/91‑1 (MQ=255)
                                                   agactatttctatcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGa                                         >  2:287697‑M2/40‑91 (MQ=255)
                                                   agactatttctatcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGa                                         >  2:3873791‑M2/40‑91 (MQ=255)
                                                   AGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGa                                         >  2:3461502‑M1/1‑91 (MQ=255)
                                                   AGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGa                                         <  1:1483395‑M1/91‑1 (MQ=255)
                                                     actatttctatcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATg                                       >  1:3623042‑M2/38‑91 (MQ=255)
                                                       TATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGTGATGaa                                     <  2:1460187‑M1/91‑1 (MQ=255)
                                                        ATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGaaa                                    <  2:1075123‑M1/91‑1 (MQ=255)
                                                        ATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGaaa                                    <  2:3763617‑M1/91‑1 (MQ=255)
                                                        ATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGaaa                                    >  2:181306‑M1/1‑91 (MQ=255)
                                                        ATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGaaa                                    >  1:388603‑M1/1‑91 (MQ=255)
                                                         tttctatcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAat                                   >  1:63649‑M2/34‑91 (MQ=255)
                                                          ttctatcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAata                                  >  2:1780610‑M2/33‑91 (MQ=255)
                                                          TTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAata                                  <  1:2669161‑M1/91‑1 (MQ=255)
                                                          TTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTCAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAata                                  >  1:1221796‑M1/1‑91 (MQ=255)
                                                           tctatcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAatat                                 >  2:1522629‑M2/32‑91 (MQ=255)
                                                             tatcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAatatat                               >  1:3179731‑M2/30‑91 (MQ=255)
                                                             TACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAatatat                               <  1:1016012‑M1/91‑1 (MQ=255)
                                                              ACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTACTTTTTCATAAAATATTATACTTTTTAAAAATGGGATGAAATATAtt                              <  2:3314883‑M1/91‑1 (MQ=255)
                                                               ccTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATAttt                             <  2:1567868/91‑1 (MQ=255)
                                                                 ctGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTc                           <  1:1866070/90‑1 (MQ=255)
                                                                  tGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTcc                          >  1:2118029/1‑91 (MQ=255)
                                                                    tATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTg                        <  2:3348831/91‑1 (MQ=255)
                                                                     aTCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGa                       <  1:3701723/91‑1 (MQ=255)
                                                                     aTCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGa                       <  2:2174908/91‑1 (MQ=255)
                                                                      tCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGaa                      >  1:726699/1‑91 (MQ=255)
                                                                       cGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGaaa                     >  2:1680885/1‑91 (MQ=255)
                                                                        gATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAAc                    <  2:2811280/91‑1 (MQ=255)
                                                                         aTAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACa                   <  2:1090513/91‑1 (MQ=255)
                                                                          tagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTAATAAAAATGGGATGAAATATATTTTCCTGAAACAt                  <  2:1557471‑M2/75‑1 (MQ=255)
                                                                              aatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTaa              <  2:2679894‑M2/79‑1 (MQ=255)
                                                                              aatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTaa              <  1:909382‑M2/79‑1 (MQ=255)
                                                                               atagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAAt             <  1:1899438‑M2/80‑1 (MQ=255)
                                                                               atagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAAt             <  2:3279920‑M2/80‑1 (MQ=255)
                                                                               atagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAAt             >  2:1187740‑M2/12‑91 (MQ=255)
                                                                                tagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAAtt            >  1:741915‑M2/11‑91 (MQ=255)
                                                                                tagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAAtt            <  1:3753094‑M2/81‑1 (MQ=255)
                                                                                 agtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTc           <  1:2750559‑M2/82‑1 (MQ=255)
                                                                                  gtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAACTATATTTTCCTGAAACATGTAATTCa          >  2:3532177‑M2/9‑91 (MQ=255)
                                                                                  gtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCa          <  1:120703‑M2/83‑1 (MQ=255)
                                                                                  gtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCa          <  1:2576345‑M2/83‑1 (MQ=255)
                                                                                  gtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCa          <  2:826724‑M2/83‑1 (MQ=255)
                                                                                  gtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTCATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCa          >  2:3249080‑M2/9‑91 (MQ=255)
                                                                                      ttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGtt      >  2:3174201‑M2/5‑91 (MQ=255)
                                                                                        ttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCg    <  2:2343237‑M2/89‑1 (MQ=255)
                                                                                         tATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCGt   >  1:3536809‑M2/2‑91 (MQ=255)
                                                                                         tATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCGt   >  2:3125403‑M2/2‑91 (MQ=255)
                                                                                         tATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCGt   <  2:2522621‑M2/90‑1 (MQ=255)
                                                                                         tATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTCCTGAAACATGTAATTCATGTTCGtt  >  2:3627196‑M2/2‑91 (MQ=255)
                                                                                          |                                                                                          
CTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCGTT  >  USA300TCH1516_ALE/1507920‑1508100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.