BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1523558 =	198 (0.970)	26 (0.140)	14/150	NT	12.5%	intergenic (‑251/+77)	dnaD/asnS	DNA replication protein DnaD/Asparagine‑‑tRNA ligase
*	?	USA300TCH1516_ALE	1523591 =	180 (0.940)	26 (0.140)	14/150	NT	12.5%	intergenic (‑284/+44)	dnaD/asnS	DNA replication protein DnaD/Asparagine‑‑tRNA ligase

Only 100 of 280 total aligned reads displayed.

ACAAAAGTTTGTTCATGATTAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATGGCGCTGTTTCAC  >  USA300TCH1516_ALE/1523501‑1523681

aCAAAAGTTTGTTCATGATTAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTc                                                                                            <  2:3742650/91‑1 (MQ=255)

 cAAAAGTTTGTTCATGATTAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCt                                                                                           >  1:1022917/1‑91 (MQ=255)

  aaaaGTTTGTTCATGATTAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCtt                                                                                          >  2:1311416/1‑91 (MQ=255)

  aaaaGTTTGTTCATGATTAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCtt                                                                                          <  2:1694266/91‑1 (MQ=255)

      gTTTGTTCATGATTAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATACATCGCCCAGCTATTAATATAGGCTGGACGATTCttttct                                                                                      >  2:1367451/1‑89 (MQ=255)

      gTTTGTTCATGATTAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTtta                                                                                      <  1:2908032/91‑1 (MQ=255)

      gTTTGTTCATGATTAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTtta                                                                                      >  2:2653399/1‑91 (MQ=255)

        ttGTTCATGATTAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTttatt                                                                                    <  1:1902167/91‑1 (MQ=255)

         tGTTCATGATTAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTttatta                                                                                   >  2:2494915/1‑91 (MQ=255)

          gTTCATGATTAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTtattat                                                                                  >  1:33871/1‑91 (MQ=255)

               tGATTAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCataa                                                                             >  1:2826709/1‑91 (MQ=255)

               tGATTAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCataa                                                                             <  1:3132245/91‑1 (MQ=255)

               tGATTAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCataa                                                                             <  1:2543187/91‑1 (MQ=255)

                 aTTAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCataata                                                                           <  2:3527658/91‑1 (MQ=255)

                  ttAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGACCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAatat                                                                          <  2:3550299/91‑1 (MQ=255)

                  aaggtcgttacttaaaatatatattatgataataaaaatAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAatat                                                                          >  2:684360‑M1/40‑91 (MQ=255)

                   tAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAatata                                                                         <  1:1398129/91‑1 (MQ=255)

                   tAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAatata                                                                         <  1:2164806/91‑1 (MQ=255)

                       ataAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATAtt                                                                     <  1:1740280/91‑1 (MQ=255)

                        taAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATAttt                                                                    >  1:462321/1‑91 (MQ=255)

                            ccGCTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAg                                                                <  1:3552661/91‑1 (MQ=255)

                             cGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGt                                                               >  1:375869/1‑91 (MQ=255)

                              gTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTa                                                              <  1:2475077/91‑1 (MQ=255)

                               ttATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTaa                                                             <  1:2457702/91‑1 (MQ=255)

                                tATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAAc                                                            <  2:3441518/91‑1 (MQ=255)

                                  tCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGa                                                          >  1:3086220/1‑91 (MQ=255)

                                  atatatattatgataataaaaagaatcgtccagcctatattaatagctgggcgattCTTTTTATTATCATAATATATATTTTAAGTAACGa                                                          >  1:839410‑M2/57‑91 (MQ=255)

                                  atatatattatgataataaaaagaatcgtccagcctatattaatagctgggcgattCTTTTTATTATCATAATATATATTTTAAGTAACGa                                                          >  1:839281‑M2/57‑91 (MQ=255)

                                    aaTCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACgtcc                                                        >  2:446067/1‑88 (MQ=255)

                                     aTCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGAccc                                                       <  1:2995569/91‑1 (MQ=255)

                                     aTCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGAccc                                                       <  1:2360259/91‑1 (MQ=255)

                                     aTCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCCGGACGATCCTTTTTCTTATCATAATATATGTTTCACGCAACGAccc                                                       >  2:1645496/1‑91 (MQ=255)

                                      tCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCt                                                      <  1:938536/91‑1 (MQ=255)

                                      tCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCt                                                      <  1:3209814/91‑1 (MQ=255)

                                        ttCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTaa                                                    <  2:1627156/91‑1 (MQ=255)

                                        ttCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTaa                                                    >  1:57380/1‑91 (MQ=255)

                                         tCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTaaa                                                   >  1:2777066/1‑91 (MQ=255)

                                         tCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTaaa                                                   <  2:2779113/91‑1 (MQ=255)

                                          cATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTaaaa                                                  >  1:1484169/1‑91 (MQ=255)

                                           aTTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAAc                                                 <  1:1184345/91‑1 (MQ=255)

                                            ttttCCACGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACt                                                <  1:1966534/91‑1 (MQ=255)

                                            ttttCCACGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACt                                                <  1:1965420/91‑1 (MQ=255)

                                            ttttCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACt                                                <  2:931328/91‑1 (MQ=255)

                                            ttttCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACt                                                <  2:752956/91‑1 (MQ=255)

                                              ttCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTa                                              >  2:297047/1‑91 (MQ=255)

                                              ttCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTa                                              >  1:2097770/1‑91 (MQ=255)

                                                 cAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATgg                                           >  1:792503/1‑91 (MQ=255)

                                                  aaGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGa                                          <  2:1972870/91‑1 (MQ=255)

                                                     aaTAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGatat                                       >  2:825362/1‑91 (MQ=255)

                                                      aTAAATCGCTCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGAtata                                      >  1:1982513/1‑91 (MQ=255)

                                                      aTAAATCGCCCAGCTATTAATATAGGCTGGACGAATCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGAtata                                      >  1:178647/1‑91 (MQ=255)

                                                        gaatcgtccagcctatattaatagctgggagattCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATaaa                                    >  2:1229674‑M2/35‑91 (MQ=255)

                                                        aaaTCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATaaa                                    <  1:1020287/91‑1 (MQ=255)

                                                         aatcgtccagcctatattaatagctgggcgattCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAAc                                   >  1:297660‑M2/34‑91 (MQ=255)

                                                         AATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAAc                                   <  1:40985‑M1/91‑1 (MQ=255)

                                                         AATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAAc                                   >  1:364409‑M1/1‑91 (MQ=255)

                                                          ATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATAGAAACg                                  <  2:3636896‑M1/91‑1 (MQ=255)

                                                           TCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCTTAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACgg                                 <  2:3336467‑M1/91‑1 (MQ=255)

                                                           TCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACgg                                 <  2:2533220‑M1/91‑1 (MQ=255)

                                                           TCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACgg                                 <  2:1122371‑M1/91‑1 (MQ=255)

                                                            CGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGt                                <  2:191731‑M1/91‑1 (MQ=255)

                                                            CGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGt                                >  2:2447224‑M1/1‑91 (MQ=255)

                                                             GCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGtt                               <  2:3137357‑M1/91‑1 (MQ=255)

                                                             GCCCAGCTATTAATATAGGCTGGACGAGTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGtt                               >  2:1043002‑M1/1‑91 (MQ=255)

                                                               ccAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTta                             <  2:2579057/91‑1 (MQ=255)

                                                                cAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATGTAAACGGTTtaa                            <  2:1040947/91‑1 (MQ=255)

                                                                 agcctatattaatagctgggcgattCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTtaat                           >  1:3695076‑M2/26‑91 (MQ=255)

                                                                 aGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTtaat                           <  2:890542/91‑1 (MQ=255)

                                                                  gcctatattaatagctgggcgattCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTtaata                          >  2:3059306‑M2/25‑91 (MQ=255)

                                                                  gCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTtaata                          <  1:1114779/91‑1 (MQ=255)

                                                                    tATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTaataat                        >  1:986650/1‑91 (MQ=255)

                                                                    ctatattaatagctgggcgattCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTaataat                        >  2:2284429‑M2/23‑91 (MQ=255)

                                                                     aTTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATc                       <  1:1601931/91‑1 (MQ=255)

                                                                      ttAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCt                      >  1:3574641/1‑91 (MQ=255)

                                                                      ttAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCt                      <  1:3104539/91‑1 (MQ=255)

                                                                       tattaatagctgggcgattCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCtt                     >  2:1843854‑M2/20‑91 (MQ=255)

                                                                       tAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCtt                     >  2:3387638/1‑91 (MQ=255)

                                                                        aaTATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTg                    <  2:1063897/91‑1 (MQ=255)

                                                                             aGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAAt               <  1:961333/91‑1 (MQ=255)

                                                                             aGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAAt               <  1:3903091/91‑1 (MQ=255)

                                                                              ggCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATg              <  1:2054616/91‑1 (MQ=255)

                                                                              ggCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATg              <  1:3815955/91‑1 (MQ=255)

                                                                              ggCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATg              <  1:671768/91‑1 (MQ=255)

                                                                               gCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATgg             <  1:2198814/91‑1 (MQ=255)

                                                                                cTGGATGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATGgc            <  2:3645670/91‑1 (MQ=255)

                                                                                cTGGACGATTCTTTTTATTATCATAATATATAGTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATGgc            <  2:3831796/91‑1 (MQ=255)

                                                                                cTGGACGATTCTTTCTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATGgc            >  2:3357034/1‑91 (MQ=255)

                                                                                 tGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATGgcg           <  1:334896/91‑1 (MQ=255)

                                                                                 tGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATGgcg           >  1:2674990/1‑91 (MQ=255)

                                                                                   gACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAATACTTATGGATATAAACGGTTTAATAATCTTGGGAATGGCGCt         <  2:1166049/91‑1 (MQ=255)

                                                                                    aCGATTCTTTTTATTATAATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATGGCGCTg        <  2:2875260/91‑1 (MQ=255)

                                                                                     cgattCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATGGCGCTGt       >  1:1688617‑M2/6‑91 (MQ=255)

                                                                                     cgattCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATGGCGCTGt       <  2:219745‑M2/86‑1 (MQ=255)

                                                                                        ttCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATGGCGCTGTTTc    >  1:3274093‑M2/3‑91 (MQ=255)

                                                                                        ttCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATGGCGCTGTTTc    >  2:327877‑M2/3‑91 (MQ=255)

                                                                                        ttCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATGGCGCTGTTTc    <  2:2147062‑M2/89‑1 (MQ=255)

                                                                                        ttCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATGGCGCTGTTTc    <  2:1560241‑M2/89‑1 (MQ=255)

                                                                                          cTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATGGCGCTGTTTCAc  <  1:470960/91‑1 (MQ=255)

                                                                                          cTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATGGCGCTGTTTCAc  <  1:1302024/91‑1 (MQ=255)

                                                                                          cTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATGGCGCTGTTTCAc  >  1:2614062/1‑91 (MQ=255)

ACAAAAGTTTGTTCATGATTAATATAAGCCGTTATCAATCTTCATTTTCCAAGAATAAATCGCCCAGCTATTAATATAGGCTGGACGATTCTTTTTATTATCATAATATATATTTTAAGTAACGACCCTAAAACTTATGGATATAAACGGTTTAATAATCTTGGGAATGGCGCTGTTTCAC  >  USA300TCH1516_ALE/1523501‑1523681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.