BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1660020 =	232 (1.140)	25 (0.140)	9/138	NT	11.9%	coding (1289/1464 nt)	gluP	Rhomboid protease GluP
*	?	USA300TCH1516_ALE	1660066 =	172 (0.980)	25 (0.140)	9/138	NT	11.9%	coding (1243/1464 nt)	gluP	Rhomboid protease GluP

Only 100 of 282 total aligned reads displayed.

TTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATT  >  USA300TCH1516_ALE/1659976‑1660156

    tATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGAta                                                                                        >  2:2571406/1‑91 (MQ=255)

      tCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGAtagt                                                                                      <  1:820924/91‑1 (MQ=255)

      tCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGAtagt                                                                                      <  1:2854820/91‑1 (MQ=255)

       cGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGAtagta                                                                                     >  1:1165253/1‑91 (MQ=255)

       cGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGAtagta                                                                                     >  2:3665901/1‑91 (MQ=255)

         cTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGc                                                                                   >  1:934709/1‑91 (MQ=255)

           aaCTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCa                                                                                 >  2:476756/1‑91 (MQ=255)

           aaCTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCa                                                                                 <  2:2712335/91‑1 (MQ=255)

           aaCTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCa                                                                                 <  1:2961948/91‑1 (MQ=255)

            aCTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCAt                                                                                >  2:1288832/1‑91 (MQ=255)

            aCTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCAt                                                                                >  1:543293/1‑91 (MQ=255)

             cTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATa                                                                               >  2:1969581/1‑91 (MQ=255)

               cAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAAt                                                                             <  2:3855641/91‑1 (MQ=255)

                 aaaTTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCATCGGACTTAGAATTGATAGTAGCCATAATCa                                                                           >  2:2889129/1‑91 (MQ=255)

                 aaaTTTAATAAACCTGATCTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGCACTTAGCATTGATAGTAGCCATAATCa                                                                           >  1:1603714/1‑91 (MQ=255)

                       aataaACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCAc                                                                     <  2:1225019/91‑1 (MQ=255)

                       aataaACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCAc                                                                     <  1:2471443/91‑1 (MQ=255)

                        ataaACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACt                                                                    >  2:1355475/1‑91 (MQ=255)

                         taaACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACtt                                                                   >  1:2778723/1‑91 (MQ=255)

                         taaACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACtt                                                                   >  2:1903233/1‑91 (MQ=255)

                         taaACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACtt                                                                   >  2:1833224/1‑91 (MQ=255)

                            aCCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTaaa                                                                >  2:3604922/1‑91 (MQ=255)

                            aCCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTaaa                                                                <  2:2757875/91‑1 (MQ=255)

                            aCCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTaaa                                                                >  1:719094/1‑91 (MQ=255)

                            aCCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTaaa                                                                >  1:522508/1‑91 (MQ=255)

                             ccTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTGaat                                                               >  1:3558429/1‑91 (MQ=255)

                             ccTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAaat                                                               <  2:1166412/91‑1 (MQ=255)

                             ccTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAaat                                                               <  1:8478/91‑1 (MQ=255)

                             ccTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAaat                                                               >  1:588909/1‑91 (MQ=255)

                               ttaTTTAGGATACATTTTAAGTCCTCTCTTTCTTTCTGTCATACTTTTGGACTTAGAATTGATAGTATCCATCATCATACCACTTAaataa                                                             <  2:2417407/89‑1 (MQ=255)

                               tGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAaataa                                                             >  2:549873/1‑91 (MQ=255)

                                gATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAaataat                                                            >  2:3251608/1‑91 (MQ=255)

                                gATTGAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAaataat                                                            <  1:2135339/91‑1 (MQ=255)

                                 aTTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAataata                                                           >  2:470125/1‑91 (MQ=255)

                                 aTTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAataata                                                           >  1:2296154/1‑91 (MQ=255)

                                  tttAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAatat                                                          >  1:1110021/1‑91 (MQ=255)

                                   ttAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATg                                                         <  2:3340640/91‑1 (MQ=255)

                                     aGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGtt                                                       <  1:2258488/91‑1 (MQ=255)

                                     aGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGtt                                                       <  1:1244388/91‑1 (MQ=255)

                                     aGGAAACATTCTAAGTCCTCGCCCCCATTCTGTCATACCTTCGGACTAAGAATTGATAGTAGCCATAATCATACCACTTAAATAACATGtt                                                       >  1:3959508/1‑91 (MQ=255)

                                       gAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTCGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTg                                                     >  2:1503619/1‑91 (MQ=255)

                                       gAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTg                                                     >  1:368815/1‑91 (MQ=255)

                                        aaaCATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGAGAGTAGCCATAATCATACCACTTAAATAATATGTTTGa                                                    <  1:3337882/91‑1 (MQ=255)

                                          aCATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGatc                                                  >  2:2421342/1‑91 (MQ=255)

                                          aCATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGatc                                                  >  2:3141303/1‑91 (MQ=255)

                                            ATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGatcat                                                <  1:1519005‑M1/91‑1 (MQ=255)

                                             ttctaagtccgaaggtatgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGatcatc                                               >  1:3535522‑M2/46‑91 (MQ=255)

                                             ttCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTCTTCGCAGTCATCATCATCCCAGCTCTATAATATGTTTGatacgc                                               <  2:1424062/91‑5 (MQ=255)

                                             TTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGatcatc                                               >  2:2211634‑M1/1‑91 (MQ=255)

                                              TCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCg                                              <  1:219848‑M1/91‑1 (MQ=255)

                                                TAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGc                                            >  2:1554928‑M1/1‑91 (MQ=255)

                                                TAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGc                                            >  2:130387‑M1/1‑91 (MQ=255)

                                                TAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGc                                            <  2:854393‑M1/91‑1 (MQ=255)

                                                TAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGc                                            >  2:138760‑M1/1‑91 (MQ=255)

                                                TAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGc                                            <  1:3173129‑M1/91‑1 (MQ=255)

                                                TAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGc                                            <  1:80088‑M1/91‑1 (MQ=255)

                                                  AGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCAt                                          <  2:2739984‑M1/91‑1 (MQ=255)

                                                  AGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCAt                                          <  1:964990‑M1/91‑1 (MQ=255)

                                                  AGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCAt                                          <  2:2154597‑M1/91‑1 (MQ=255)

                                                  AGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCAt                                          >  2:2140830‑M1/1‑91 (MQ=255)

                                                    TCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATaa                                        >  2:1327693‑M1/1‑91 (MQ=255)

                                                     ccgaaggtatgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAt                                       >  1:3905695‑M2/38‑91 (MQ=255)

                                                      cgaaggtatgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAtt                                      >  1:3094755‑M2/37‑91 (MQ=255)

                                                       tCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAttt                                     >  2:3731917/1‑91 (MQ=255)

                                                       tCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAttt                                     <  1:3788286/91‑1 (MQ=255)

                                                       gaaggtatgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAttt                                     >  1:2649005‑M2/36‑91 (MQ=255)

                                                       gaaggtatgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAttt                                     >  2:2458403‑M2/36‑91 (MQ=255)

                                                        cGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAtttt                                    >  1:2912537/1‑91 (MQ=255)

                                                        cGCTCCCATTCTGTCATACATTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAtttt                                    >  2:3455364/1‑91 (MQ=255)

                                                        aaggtatgacagaatgggagcgaggacttagaatTGATAGTCGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAtttt                                    >  1:3424834‑M2/35‑91 (MQ=255)

                                                         gCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAttttt                                   <  2:3557482/91‑1 (MQ=255)

                                                          cTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTttta                                  <  1:1887839/91‑1 (MQ=255)

                                                           tCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTtttat                                 <  1:2361499/91‑1 (MQ=255)

                                                           tCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTAATCATCGGCATAATTtttat                                 <  2:1448815/91‑1 (MQ=255)

                                                             atgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTtttattt                               >  1:1200744‑M2/30‑91 (MQ=255)

                                                               aTTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTttatttat                             <  2:1624647/91‑1 (MQ=255)

                                                               aTTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTttatttat                             >  1:664136/1‑91 (MQ=255)

                                                               aTTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTttatttat                             >  2:969133/1‑91 (MQ=255)

                                                               aTTCTGGCATACCTTCGGACTTAGAATTGAGAGTAGAGATAATCGTTCCACTTAATTAATATGTTTGTTCATTGGCATAAGTTttatttat                             <  2:3361727/91‑1 (MQ=255)

                                                                ttCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTtatttatt                            >  2:721788/1‑91 (MQ=255)

                                                                ttCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTtatttatt                            >  2:1799379/1‑91 (MQ=255)

                                                                ttCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTtatttatt                            >  1:3253574/1‑91 (MQ=255)

                                                                 tCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTGAATAATATGTTTGATCATCGGCATAATTTTTATTTATTg                           <  2:824864/91‑1 (MQ=255)

                                                                 ccgttCATGCCTTAGGACTGAGAATTGATGGGGGCCATTATGATGCCACTTGCTTAGTTTGTTTGACCATCGGCATAATTTTTGTTTATTg                           <  2:3392222/87‑1 (MQ=255)

                                                                      cATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGc                      >  1:3016827/1‑91 (MQ=255)

                                                                        tACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCtt                    >  1:2716740/1‑91 (MQ=255)

                                                                        tACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCtt                    <  1:251816/91‑1 (MQ=255)

                                                                            ttCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTcaca                <  2:2962139/91‑1 (MQ=255)

                                                                            ttCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTcaca                <  1:2091846/91‑1 (MQ=255)

                                                                             tCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACaa               >  2:1789141/1‑91 (MQ=255)

                                                                             tCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACaa               >  1:1743697/1‑91 (MQ=255)

                                                                             gcGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACaa               <  2:2512736/90‑1 (MQ=255)

                                                                              cGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAat              >  2:1444382/1‑91 (MQ=255)

                                                                                gacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAatat            >  2:2822422‑M2/11‑91 (MQ=255)

                                                                                  cttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATAttt          <  1:3391656‑M2/83‑1 (MQ=255)

                                                                                    tagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTg        <  2:2282254‑M2/85‑1 (MQ=255)

                                                                                       aatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGc     <  1:133438‑M2/88‑1 (MQ=255)

                                                                                        atTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCa    >  2:3701320‑M2/3‑91 (MQ=255)

                                                                                         tTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCAt   >  2:1707745‑M2/2‑91 (MQ=255)

                                                                                          tGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCAtt  <  1:75697/91‑1 (MQ=255)

TTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATT  >  USA300TCH1516_ALE/1659976‑1660156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.