BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1671778 =	204 (1.000)	24 (0.130)	11/146	NT	12.8%	intergenic (‑23/+108)	trmK/sigA	tRNA (adenine(22)‑N(1))‑methyltransferase/RNA polymerase sigma factor SigA
*	?	USA300TCH1516_ALE	1671809 =	142 (0.760)	24 (0.130)	11/146	NT	12.8%	intergenic (‑54/+77)	trmK/sigA	tRNA (adenine(22)‑N(1))‑methyltransferase/RNA polymerase sigma factor SigA

Only 100 of 252 total aligned reads displayed.

GACTTACCGTCGTTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCATAAAGT  >  USA300TCH1516_ALE/1671719‑1671899

gACTTACCGTCGTTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACctca                                                                                            >  2:958781/1‑91 (MQ=255)

gACTTACCGTCGTTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACctca                                                                                            <  2:2514933/91‑1 (MQ=255)

gACTTACCGTCGTTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACctca                                                                                            >  1:2689134/1‑91 (MQ=255)

 aCTTACCGTCGTTAATCGGTTATTTAACGAAATCATTTTATTCAAAAAAAAAAAAAAAGAGGTTGAACATTATTCAATGTACCAACctcac                                                                                           <  2:858183/91‑1 (MQ=255)

  tgagaccaagacatgaataagcgcttatttatttttagattaagatttaacctgagtGAGGTTGAACATTATTCAATGTACCAACctcact                                                                                          >  2:1489167‑M1/58‑91 (MQ=255)

  cTTACCGTCGTTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACctcact                                                                                          >  2:3326476/1‑91 (MQ=255)

    tACCGTCGTTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACctcactca                                                                                        <  1:3043152/91‑1 (MQ=255)

      ccGTCGTTAATCGGTTATTCAACGAAATCATTTTATTCTCCTTTATGACAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAg                                                                                      >  2:1333810/1‑91 (MQ=255)

       cgtcgtTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGt                                                                                     <  1:207406/91‑1 (MQ=255)

          cgtTAGTCGGTTATTTAACGAAATCATTTTATTCTCCGTTATGACAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTaa                                                                                  <  2:3547672/91‑1 (MQ=255)

            ttAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAGTGTACCAACCTCACTCAAGGTAAAt                                                                                >  1:3675142/1‑91 (MQ=255)

            ttAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAAt                                                                                >  2:1018893/1‑91 (MQ=255)

             tAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATc                                                                               <  1:1737473/91‑1 (MQ=255)

              aaTCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCt                                                                              >  1:3484053/1‑91 (MQ=255)

              aaTCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCt                                                                              >  2:345988/1‑91 (MQ=255)

               aTCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCtt                                                                             >  2:3948601/1‑91 (MQ=255)

                  ggTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAAt                                                                          >  2:1690165/1‑91 (MQ=255)

                   attATTTAACGAAATCATTTTATTCTAAAAAAAAAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATc                                                                         <  2:3524021/90‑1 (MQ=255)

                    ttATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCt                                                                        >  2:499404/1‑91 (MQ=255)

                    ttATTTAACGAAATCATTTTATTCTCCTATATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCt                                                                        <  2:2295886/91‑1 (MQ=255)

                     tATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTa                                                                       >  1:2850984/1‑91 (MQ=255)

                       tttAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTaaa                                                                     <  1:644514/91‑1 (MQ=255)

                       tttAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTaaa                                                                     <  2:2147270/91‑1 (MQ=255)

                       tttAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTaaa                                                                     >  2:1417720/1‑91 (MQ=255)

                        ttAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTaaaa                                                                    >  1:3747961/1‑91 (MQ=255)

                        ttAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTaaaa                                                                    >  1:637551/1‑91 (MQ=255)

                        ttAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTaaaa                                                                    >  2:1700147/1‑91 (MQ=255)

                         tAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTaaaaa                                                                   >  2:25903/1‑91 (MQ=255)

                          aaCGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAaaat                                                                  <  1:2284002/91‑1 (MQ=255)

                           aCGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAaaata                                                                 <  1:2196179/91‑1 (MQ=255)

                            cGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAaaataa                                                                >  2:181596/1‑91 (MQ=255)

                            cGAAATCATTTTATTCAACAAAAAAAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAaaataa                                                                <  2:2715498/91‑1 (MQ=255)

                             gAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTGTTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAaaataaa                                                               <  1:3945240/91‑1 (MQ=255)

                                 tCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAataaataac                                                           >  2:1580344/1‑90 (MQ=255)

                                   aTTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAgcg                                                         >  2:1058913/1‑91 (MQ=255)

                                   aTTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAgcg                                                         >  2:3042938/1‑91 (MQ=255)

                                     tttATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCt                                                       >  2:2231170/1‑91 (MQ=255)

                                     tttATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCt                                                       >  2:2231583/1‑91 (MQ=255)

                                      ttATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCtt                                                      >  1:2388050/1‑91 (MQ=255)

                                      ttATTCTCCGTGATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCtt                                                      <  2:3604552/91‑1 (MQ=255)

                                       tATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTa                                                     <  1:449761/91‑1 (MQ=255)

                                       tATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTa                                                     >  2:2095822/1‑91 (MQ=255)

                                        aTTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTAt                                                    <  1:3414666/91‑1 (MQ=255)

                                             cctgtATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATg                                               <  1:3111964/87‑1 (MQ=255)

                                              ctatATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGt                                              <  2:190630/88‑1 (MQ=255)

                                              cTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCGCTCAAGTTTAATGTTAATCTAAGAATAAATAAGCGCTTATTCATGt                                              <  1:3156776/91‑1 (MQ=255)

                                                ttATGAAAAAAGAGGTTGAACATTATGCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCt                                            <  2:148074/91‑1 (MQ=255)

                                                  aTGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTg                                          >  1:1026638/1‑91 (MQ=255)

                                                  aTGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTg                                          <  1:2619471/91‑1 (MQ=255)

                                                   tGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTgg                                         <  1:1952976/91‑1 (MQ=255)

                                                     aaaaaaGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTa                                       <  2:2198008/91‑1 (MQ=255)

                                                     aaaaaaGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTa                                       >  1:3535314/1‑91 (MQ=255)

                                                     aaaaaaGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTa                                       >  2:2895695/1‑91 (MQ=255)

                                                      aaaaaGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTat                                      <  2:1627320/91‑1 (MQ=255)

                                                       aaaaGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTatc                                     >  2:3735912/1‑91 (MQ=255)

                                                         aaGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTatcaa                                   <  2:2932504/91‑1 (MQ=255)

                                                          agagGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTatcaat                                  >  2:3945083/1‑91 (MQ=255)

                                                           GAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTatcaatc                                 <  1:3337388‑M1/91‑1 (MQ=255)

                                                            AGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTatcaatca                                >  2:609263‑M1/1‑91 (MQ=255)

                                                             ggttggtacattgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCAt                               >  1:2941798‑M2/30‑91 (MQ=255)

                                                             GGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTATTCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCAt                               <  2:3362227‑M1/91‑1 (MQ=255)

                                                             GGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCAt                               <  2:3924268‑M1/91‑1 (MQ=255)

                                                              gttggtacattgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCAtt                              >  1:2580888‑M2/29‑91 (MQ=255)

                                                              gttggtacattgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCAtt                              >  2:379060‑M2/29‑91 (MQ=255)

                                                              GTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTACTCATGTCTTGGTATCAATCAtt                              <  2:3185634‑M1/91‑1 (MQ=255)

                                                               ttggtacattgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTa                             >  2:627606‑M2/28‑91 (MQ=255)

                                                               TTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTa                             <  1:5497‑M1/91‑1 (MQ=255)

                                                               TTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTa                             <  1:3084914‑M1/91‑1 (MQ=255)

                                                                tggtacattgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATATGCGCTTATTCATGTCTTGGTATCAATCATTaa                            >  1:3370787‑M2/27‑91 (MQ=255)

                                                                TGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTaa                            >  1:151140‑M1/1‑91 (MQ=255)

                                                                TGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTaa                            >  1:785544‑M1/1‑91 (MQ=255)

                                                                 ggtacattgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTaaa                           >  1:688274‑M2/26‑91 (MQ=255)

                                                                  gtacattgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTaaaa                          >  1:839427‑M2/25‑91 (MQ=255)

                                                                  aaCATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTaaaa                          >  1:986085/1‑91 (MQ=255)

                                                                   tacattgaataatgctcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAAt                         >  2:2851795‑M2/24‑91 (MQ=255)

                                                                   aCATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAAt                         >  2:2135191/1‑91 (MQ=255)

                                                                     cattgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTg                       >  1:735501‑M2/22‑91 (MQ=255)

                                                                     cattgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTg                       >  2:3261467‑M2/22‑91 (MQ=255)

                                                                     cattgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAAT‑AATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGa                      >  2:386853‑M2/22‑91 (MQ=255)

                                                                       ttgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGat                     >  1:1375617‑M2/20‑91 (MQ=255)

                                                                       ttgaataatgttcaacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGat                     >  2:3242106‑M2/20‑91 (MQ=255)

                                                                          tCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGAtata                  >  2:1748142/1‑91 (MQ=255)

                                                                           cAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATaa                 >  1:412760/1‑91 (MQ=255)

                                                                            aaTGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATaaa                <  1:1091208/91‑1 (MQ=255)

                                                                             aTGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAAt               >  1:2887542/1‑91 (MQ=255)

                                                                              tGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAAtt              <  1:2551007/91‑1 (MQ=255)

                                                                              tGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAAtt              >  2:701833/1‑91 (MQ=255)

                                                                               gTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTa             >  2:3071604/1‑91 (MQ=255)

                                                                                tACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTaa            >  2:3104103/1‑91 (MQ=255)

                                                                                   caacctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATcc         <  1:3822619‑M2/84‑1 (MQ=255)

                                                                                     acctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCAt       <  1:2174860‑M2/86‑1 (MQ=255)

                                                                                     acctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCAt       >  1:1515114‑M2/6‑91 (MQ=255)

                                                                                     acctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCAt       >  2:1886893‑M2/6‑91 (MQ=255)

                                                                                     acctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCAt       >  1:1261844‑M2/6‑91 (MQ=255)

                                                                                       ctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCATaa     <  1:1881095‑M2/88‑1 (MQ=255)

                                                                                       ctcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCATaa     <  2:2768212‑M2/88‑1 (MQ=255)

                                                                                        tcACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCATaaa    <  2:1970589‑M2/89‑1 (MQ=255)

                                                                                         cACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCATAAAg   <  1:679369‑M2/90‑1 (MQ=255)

                                                                                         cACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCATAAAg   >  2:1381054‑M2/2‑91 (MQ=255)

                                                                                          actcaAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCATAAAGt  >  2:775371/1‑91 (MQ=255)

GACTTACCGTCGTTAATCGGTTATTTAACGAAATCATTTTATTCTCCTTTATGAAAAAAGAGGTTGAACATTATTCAATGTACCAACCTCACTCAAGTTAAATCTTAATCTAAAAATAAATAAGCGCTTATTCATGTCTTGGTATCAATCATTAAAATTGATATAAATTAATCCATAAAGT  >  USA300TCH1516_ALE/1671719‑1671899

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.