BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1682514 =	188 (0.920)	21 (0.120)	11/140	NT	11.3%	intergenic (‑259/+45)	USA300HOU_RS08380/USA300HOU_RS08385	PhoH‑like protein/hypothetical protein
*	?	USA300TCH1516_ALE	1682550 =	164 (0.920)	21 (0.120)	11/140	NT	11.3%	intergenic (‑295/+9)	USA300HOU_RS08380/USA300HOU_RS08385	PhoH‑like protein/hypothetical protein

Only 100 of 279 total aligned reads displayed.

TAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGAT  >  USA300TCH1516_ALE/1682460‑1682640

tAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTc                                                                                            >  2:1368551/1‑91 (MQ=255)

tAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTc                                                                                            >  2:2413233/1‑91 (MQ=255)

ggtatgatatggtcagaaattttagctaaaccaaaacaattataaaattttttgaaaacaagcactatcgtaatggtagttgcttgttttc                                                                                            >  1:1595143‑M2/91‑91 (MQ=255)

 aaCTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCa                                                                                           <  2:1175154/91‑1 (MQ=255)

 aaCGAATATTTCTCGAAAAATTCTCTTTGTTTTTGAATTTTTCGTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCa                                                                                           <  2:2846258/91‑1 (MQ=255)

  aCTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaa                                                                                          >  1:127712/1‑91 (MQ=255)

    tAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaaaa                                                                                        <  1:1661853/91‑1 (MQ=255)

     gatatggtcagaaattttagctaaaccaaaacaattataaaattttttgAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaaaaa                                                                                       >  1:2499911‑M1/50‑91 (MQ=255)

     aaTATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaaaaa                                                                                       >  2:2214274/1‑91 (MQ=255)

      atatTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaaaaaa                                                                                      >  2:694502/1‑91 (MQ=255)

      atatTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaaaaaa                                                                                      >  2:1270142/1‑91 (MQ=255)

       tatTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTTCCATTACGTTAGTGCTTGTTTTCaaaaagt                                                                                     <  1:2563615/91‑3 (MQ=255)

       tatTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAAt                                                                                     >  2:915018/1‑91 (MQ=255)

         tttCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAAttt                                                                                   <  2:1692297/91‑1 (MQ=255)

         tttCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAAttt                                                                                   <  2:1425702/91‑1 (MQ=255)

          ttCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAAtttt                                                                                  <  2:2141441/91‑1 (MQ=255)

          ttCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAAtttt                                                                                  >  2:2572804/1‑91 (MQ=255)

           tctcGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAACACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTta                                                                                 >  2:3893200/1‑91 (MQ=255)

            ctcGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTtat                                                                                <  1:2227817/91‑1 (MQ=255)

            ctcGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTtat                                                                                >  1:2027484/1‑91 (MQ=255)

                 aaaaTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTg                                                                           <  1:2172861/91‑1 (MQ=255)

                 aaaaTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTg                                                                           <  2:2925963/91‑1 (MQ=255)

                  aaaTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGt                                                                          <  2:3404659/91‑1 (MQ=255)

                  aaaTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGt                                                                          >  1:1001637/1‑91 (MQ=255)

                  aaaTTCTCTTTGTTTTTTAATTTTAATTAAAGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGt                                                                          <  2:2635543/91‑1 (MQ=255)

                   aaTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGtt                                                                         <  2:1798228/91‑1 (MQ=255)

                   aaTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGtt                                                                         <  1:879607/91‑1 (MQ=255)

                    aTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGttt                                                                        >  2:47771/1‑91 (MQ=255)

                        tctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTAGCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGt                                                                    <  1:3138879/91‑1 (MQ=255)

                          tttGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCCAAAAATTTTATAATTGTTTTGGttt                                                                  >  2:3422301/1‑91 (MQ=255)

                          tttGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGttt                                                                  <  1:3469411/91‑1 (MQ=255)

                             gTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGc                                                               >  2:2360336/1‑91 (MQ=255)

                                ttttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTaa                                                            <  1:1549172/91‑1 (MQ=255)

                                 tttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTaaa                                                           >  2:2759127/1‑91 (MQ=255)

                                  ttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTaaaa                                                          <  1:1083992/91‑1 (MQ=255)

                                   tAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAAt                                                         >  1:541837/1‑91 (MQ=255)

                                   tAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATAACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAAt                                                         >  1:3337210/1‑91 (MQ=255)

                                     aTTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAAttt                                                       <  1:3691382/91‑1 (MQ=255)

                                     aTTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAAttt                                                       >  2:3260435/1‑91 (MQ=255)

                                       ttttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCt                                                     <  2:715390/91‑1 (MQ=255)

                                       ttttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCt                                                     >  1:2042123/1‑91 (MQ=255)

                                       ttttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCt                                                     <  1:183945/91‑1 (MQ=255)

                                       ttttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCt                                                     >  1:149647/1‑91 (MQ=255)

                                        tttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTg                                                    >  2:3279520/1‑91 (MQ=255)

                                          tCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGAc                                                  >  1:3876946/1‑91 (MQ=255)

                                            ttAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCa                                                <  2:1136735/91‑1 (MQ=255)

                                            ttAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCa                                                <  1:760818/91‑1 (MQ=255)

                                             tAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCat                                               <  1:553707/91‑1 (MQ=255)

                                              aaCGTAAAAAAACAAGCAACTTCCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCata                                              >  2:348532/1‑91 (MQ=255)

                                              aaCGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCata                                              <  2:2616264/91‑1 (MQ=255)

                                              aaCGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCata                                              >  1:1370757/1‑91 (MQ=255)

                                               aCGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCatat                                             <  1:1916731/91‑1 (MQ=255)

                                               aCGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCatat                                             <  1:2334250/91‑1 (MQ=255)

                                                  tttgaaaacaagcactatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCAt                                          >  1:3195183‑M2/41‑91 (MQ=255)

                                                  tttgaaaacaagcactatcgtaatggtagttgcatgtcttCAAAAACTTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCAt                                          >  1:3151039‑M2/41‑91 (MQ=255)

                                                  tAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCAt                                          >  2:2426746/1‑91 (MQ=255)

                                                  tAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCAt                                          <  1:1043338/91‑1 (MQ=255)

                                                  tAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCAt                                          >  2:1477944/1‑91 (MQ=255)

                                                   aaaaaaaCAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATa                                         <  1:2874062/91‑1 (MQ=255)

                                                      aaaacaagcactatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCa                                      >  1:2762826‑M2/37‑91 (MQ=255)

                                                       AAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCAt                                     >  1:2646789‑M1/1‑91 (MQ=255)

                                                        AACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCAtt                                    >  2:1021574‑M1/1‑91 (MQ=255)

                                                         acaagcactatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTg                                   >  2:1281004‑M2/34‑91 (MQ=255)

                                                         ACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTg                                   >  1:2981615‑M1/1‑91 (MQ=255)

                                                          CAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGa                                  <  1:1596166‑M1/91‑1 (MQ=255)

                                                           AAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGAt                                 <  2:3713600‑M1/91‑1 (MQ=255)

                                                            agcactatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGAtt                                >  2:2680209‑M2/31‑91 (MQ=255)

                                                            AGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGAtt                                <  2:157639‑M1/91‑1 (MQ=255)

                                                            AGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGAtt                                <  1:633133‑M1/91‑1 (MQ=255)

                                                            AGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGAtt                                <  1:1600027‑M1/91‑1 (MQ=255)

                                                             gcactatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTa                               >  1:3856003‑M2/30‑91 (MQ=255)

                                                             GCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTa                               <  1:908594‑M1/91‑1 (MQ=255)

                                                              cactatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTAc                              >  2:2600890‑M2/29‑91 (MQ=255)

                                                              cactatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTAc                              >  2:1885275‑M2/29‑91 (MQ=255)

                                                              CAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTAc                              <  2:2924958‑M1/91‑1 (MQ=255)

                                                               actatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACt                             >  2:2553977‑M2/28‑91 (MQ=255)

                                                               actatcgtaatggtagttgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACt                             >  1:3852270‑M2/28‑91 (MQ=255)

                                                                    ccATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATc                        <  2:1078101/91‑1 (MQ=255)

                                                                    ccATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATc                        <  2:770899/91‑1 (MQ=255)

                                                                    ccATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATc                        >  2:2812278/1‑91 (MQ=255)

                                                                      aTTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCtt                      <  2:2530077/91‑1 (MQ=255)

                                                                      aTTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCtt                      >  1:3132458/1‑91 (MQ=255)

                                                                        tACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTa                    >  1:1205579/1‑91 (MQ=255)

                                                                           gATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCa                 <  1:3766231/91‑1 (MQ=255)

                                                                            aTAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCaa                <  1:48267/91‑1 (MQ=255)

                                                                              aGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTCCTTCATCTTTATCAAAt              >  2:3177464/1‑91 (MQ=255)

                                                                              aGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAAt              <  1:1943426/91‑1 (MQ=255)

                                                                              aGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAAt              >  2:3943483/1‑91 (MQ=255)

                                                                               gTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAAtt             >  2:3723991/1‑91 (MQ=255)

                                                                                tgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTg            <  1:690673‑M2/81‑1 (MQ=255)

                                                                                tgcttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATCTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTg            >  1:3421253‑M2/11‑91 (MQ=255)

                                                                                  cttgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGa          <  1:1791686‑M2/83‑1 (MQ=255)

                                                                                    tgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAAc        <  2:942385‑M2/85‑1 (MQ=255)

                                                                                    tgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAAc        <  1:2440588‑M2/85‑1 (MQ=255)

                                                                                    tgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAAc        >  2:643415‑M2/7‑91 (MQ=255)

                                                                                    tgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAAc        >  2:569903‑M2/7‑91 (MQ=255)

                                                                                    tgttttCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAAc        >  2:3631002‑M2/7‑91 (MQ=255)

                                                                                         tCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGa   >  2:3823888‑M2/2‑91 (MQ=255)

                                                                                         tCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGa   <  1:3626103‑M2/90‑1 (MQ=255)

                                                                                          cAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGAt  >  2:1513405/1‑91 (MQ=255)

TAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGAT  >  USA300TCH1516_ALE/1682460‑1682640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.