| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1702267 | 173 (0.850) | 11 (0.060) | 6/138 | NT | 6.9% | intergenic (‑11/+38) | comEA/tylM1 | ComE operon protein 1/dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase |
| ? | USA300TCH1516_ALE | = 1702290 | 148 (0.840) | intergenic (‑34/+15) | comEA/tylM1 | ComE operon protein 1/dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase | |||||
Only 100 of 254 total aligned reads displayed.
AATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCA > USA300TCH1516_ALE/1702200‑1702380 | atagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGc > 2:1828211‑M1/58‑91 (MQ=255)aaTATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGGTACAATGAAACCACTCCTCATCTTTATACACGTCTGAGc < 2:2490952/91‑1 (MQ=255)aaTATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGc > 2:3271746/1‑91 (MQ=255) tgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTg > 2:41959‑M1/53‑91 (MQ=255) ataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgagtg > 2:3801363‑M2/1‑86 (MQ=255) ataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgagtg > 2:362542‑M2/1‑86 (MQ=255) taACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgagtgg < 1:2293400‑M2/91‑7 (MQ=255) aaCTACCAATGCGCTAAAAAATCTTTATAGCGTAATAAAAAATGCTACAATAAAACCACTTCTCAACTTTATACACTACTGAGCGAGTGGt > 2:99108/1‑91 (MQ=255) acataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGtt > 1:40302‑M1/50‑91 (MQ=255) cTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgcgtggttt < 2:595257‑M2/91‑10 (MQ=255) ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt < 1:392959/91‑1 (MQ=255) ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt < 2:1961123/91‑1 (MQ=255) ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt < 1:2552696/91‑1 (MQ=255) ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt < 1:1768512/91‑1 (MQ=255) ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt < 1:1429604/91‑1 (MQ=255) tGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACtttt < 1:1756488/91‑1 (MQ=255) gTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtt > 2:3195212/1‑91 (MQ=255) gTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtt < 2:2653685/91‑1 (MQ=255) gTTAAAAAATCTTAATAGCGTAATATAAATTGATACAATAAAACTACACCTTAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtt > 2:1630363/1‑91 (MQ=255) ttAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAttt < 2:1891157/91‑1 (MQ=255) tgctgaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTGTTACTTTTAttt > 1:3057857‑M1/38‑91 (MQ=255) tAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtttt < 2:2626930/91‑1 (MQ=255) aaaaaaTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAttttt > 2:79500/1‑91 (MQ=255) cTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAAt > 1:1381969/1‑91 (MQ=255) tttATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCCATg > 2:2041468/1‑91 (MQ=255) ttgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATg < 1:2798679‑M1/64‑1 (MQ=255) ttATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGa > 2:2086696/1‑91 (MQ=255) ttATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGa > 1:1519553/1‑91 (MQ=255) tataGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaa > 2:304229/1‑91 (MQ=255) tataGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaa > 1:2897347/1‑91 (MQ=255) tataGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaa > 2:2415430/1‑91 (MQ=255) tataGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCCGACCGAGTGGTTTTACTTTTCTTTTTTCGCCATGaa > 2:1283957/1‑91 (MQ=255) ataGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaaa < 2:256525/91‑1 (MQ=255) cGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACa > 1:1460232/1‑91 (MQ=255) gTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACaa < 2:338356/91‑1 (MQ=255) taataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAAt > 1:3914078/1‑91 (MQ=255) ataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCt > 1:810239/1‑91 (MQ=255) taaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCtt < 1:1298283/91‑1 (MQ=255) taaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCtt > 1:693221/1‑91 (MQ=255) taaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCtt < 1:2267846/91‑1 (MQ=255) aaaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTc < 2:2176232/91‑1 (MQ=255) aaaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTc > 2:2462398/1‑91 (MQ=255) aTTGATACAATAAAACCACTCCTCAACTTTATGCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc < 1:3360977/91‑1 (MQ=255) aTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc > 1:3787510/1‑91 (MQ=255) aTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc < 1:322692/91‑1 (MQ=255) aTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc < 2:48331/91‑1 (MQ=255) tGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCAt < 1:653197/91‑1 (MQ=255) gATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATc < 2:669561/91‑1 (MQ=255) gATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATc > 2:2381944/1‑91 (MQ=255) gATACAATAAAACCACTCCTCAACTTTAGACACGTCTGCGCGAGTGGCTTTACTTTTATTTTTTCGCAATGAACACCAATCTTTCTGCGTc > 2:1141388/1‑91 (MQ=255) aTACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCt < 2:3107555/91‑1 (MQ=255) aTACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCt > 1:1223321/1‑91 (MQ=255) aaTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAt < 1:1883172/91‑1 (MQ=255) aTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAtt < 1:1935559/91‑1 (MQ=255) aTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAtt < 1:2706577/91‑1 (MQ=255) aaaCCACTCCTCAACTTTATACACGTCTGAGCgagtggttttattgtatcaatttttattacgctataaagattttttaactcaatggaag < 1:1402867‑M2/91‑60 (MQ=255) CCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTc < 1:315545‑M1/91‑1 (MQ=255) CCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTc < 1:1028224‑M1/91‑1 (MQ=255) aCTCCTCAACTTTATACACGTCTGAGCgagtggttttattgtatcaatttttattgtgctatcaagatttgttaactcaatggaagttata < 2:1699749‑M2/91‑65 (MQ=255) aCTCCTCAACTTTATACACGTCTGAGCgagtggttttattgtatcaatttttattacgctataaagattttttaactcaatggaagttata < 1:875448‑M2/91‑65 (MQ=255) ACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCAt < 1:3529408‑M1/91‑1 (MQ=255) gtcctcATATCTATACACGTATGTGCGTGTGGATCTACTTCTATTTTTTCGCAATGAAAAACAAACAATCGGCATCTTCATTATGTTCATc < 2:2700763/90‑1 (MQ=255) tcctcAACTTTATACACGTCTGAGCgagtggttttattgtatcaatttttattacgctataaagattttttaactcaatggaagttatata < 2:1931894‑M2/91‑67 (MQ=255) TCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCt < 1:2192326‑M1/91‑1 (MQ=255) TCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCt > 2:2417508‑M1/1‑91 (MQ=255) TCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCt > 2:2417482‑M1/1‑91 (MQ=255) TCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCt < 1:724136‑M1/91‑1 (MQ=255) cctcAACTTTATACGCGTCTGAGCgaacggttttattgtatcaatttttattacgctataaagattttttaattcagtggaagttatatat < 2:2249286‑M2/91‑68 (MQ=255) CCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTa > 2:3575087‑M1/1‑91 (MQ=255) tcAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCtata > 1:2179083/1‑91 (MQ=255) tcAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCtata > 1:479823/1‑91 (MQ=255) tcAACTTTATACACGTCTGAGCGAGTGGTTGTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCtata < 2:1475653/91‑1 (MQ=255) cAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTatat < 1:3773147/91‑1 (MQ=255) cAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTatat > 1:663658/1‑91 (MQ=255) cTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTaa > 2:2304899/1‑91 (MQ=255) tttATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTaaa > 1:573549/1‑91 (MQ=255) tttATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTaaa < 2:3756157/91‑1 (MQ=255) ttATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTaaaa > 2:3508142/1‑91 (MQ=255) tataCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCTCATTGAACAACAATCTTTCTGCCTCTTCATTATGTTCATCTATATTAAAAt > 2:831099/1‑91 (MQ=255) ataCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATc > 2:3430689/1‑91 (MQ=255) taCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTTTCTTTTTAAAACAATCTTCCTGCATCTTCATTATGTTCATTTATATTAAAATCa > 2:382130/1‑91 (MQ=255) taCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCa > 1:1007811/1‑91 (MQ=255) taCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCa > 1:1948470/1‑91 (MQ=255) taCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCa > 2:1528553/1‑91 (MQ=255) taCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCa > 1:3118715/1‑91 (MQ=255) acatGTCTTAGCGAGTGGATTTACTTTTATTTTTTCGCAATTAAAAACAATCTTTCTGCATCTTCATTTTGTTCTTCTATATTATAATTAg > 2:1002689/1‑91 (MQ=255) acacGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAg < 2:3449989/91‑1 (MQ=255) cacGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGt > 2:3694283/1‑91 (MQ=255) acGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTa > 1:1841153/1‑91 (MQ=255) cGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTaa < 1:1094071/91‑1 (MQ=255) gTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTaaa > 1:1736365/1‑91 (MQ=255) gTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTaaa < 1:2611248/91‑1 (MQ=255) tCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAAt < 2:2907006/91‑1 (MQ=255) tCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAAt > 2:185781/1‑91 (MQ=255) tCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAAt > 2:1029877/1‑91 (MQ=255) aGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGttt > 2:2574016/1‑91 (MQ=255) aGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGttt < 1:3613941/91‑1 (MQ=255) gCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTc < 2:295370/91‑1 (MQ=255) cGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCa > 2:3582691/1‑91 (MQ=255) cGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCa > 1:2448487/1‑91 (MQ=255) | AATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCA > USA300TCH1516_ALE/1702200‑1702380 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |