BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1708636 =	216 (1.060)	21 (0.130)	12/132	NT	10.3%	intergenic (+81/+121)	USA300HOU_RS08530/entA_3	hypothetical protein/Enterotoxin type A
*	?	USA300TCH1516_ALE	1708685 =	189 (1.130)	21 (0.130)	12/132	NT	10.3%	intergenic (+130/+72)	USA300HOU_RS08530/entA_3	hypothetical protein/Enterotoxin type A

Only 100 of 352 total aligned reads displayed.

TCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAG  >  USA300TCH1516_ALE/1708595‑1708775

tCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGttttt                                                                                            >  2:208662/1‑91 (MQ=255)

 cGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTa                                                                                           >  1:3877331/1‑91 (MQ=255)

 cGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTa                                                                                           >  1:2252577/1‑91 (MQ=255)

  gTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTAt                                                                                          >  2:27368/1‑91 (MQ=255)

  gTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTAt                                                                                          >  2:684278/1‑91 (MQ=255)

  gTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTAt                                                                                          <  2:1546045/91‑1 (MQ=255)

   tATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTAtt                                                                                         <  1:1607768/91‑1 (MQ=255)

    aTCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTAttt                                                                                        >  2:2536120/1‑91 (MQ=255)

      cGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGt                                                                                      >  2:823988/1‑91 (MQ=255)

           tCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTaacaa                                                                                 <  2:3409378/91‑1 (MQ=255)

            ccTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTaacaac                                                                                >  2:2451083/1‑91 (MQ=255)

              tttGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACAt                                                                              >  1:409226/1‑91 (MQ=255)

              tttGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACAt                                                                              <  2:3893027/91‑1 (MQ=255)

                tgtgCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATaa                                                                            <  1:990580/91‑1 (MQ=255)

                 gtgCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTCAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAAt                                                                           >  1:3137765/1‑91 (MQ=255)

                 gtgCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAAt                                                                           <  1:2847879/91‑1 (MQ=255)

                 gtgCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAAt                                                                           >  2:3534352/1‑91 (MQ=255)

                  tgCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATg                                                                          <  1:1515029/91‑1 (MQ=255)

                  tgCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATg                                                                          <  1:465376/91‑1 (MQ=255)

                   gCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGa                                                                         <  2:1610397/91‑1 (MQ=255)

                   gCATTAAAGATAATGCTAATAGAACACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACCACATAATGa                                                                         <  2:3160620/91‑1 (MQ=255)

                      ttAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAg                                                                      >  2:331008/1‑91 (MQ=255)

                      ttAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAg                                                                      <  1:2233247/91‑1 (MQ=255)

                        aaaGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGt                                                                    >  2:1901150/1‑91 (MQ=255)

                            aTAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACtt                                                                <  1:1356622/91‑1 (MQ=255)

                            aTAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACtt                                                                >  1:3809293/1‑91 (MQ=255)

                            aTAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACtt                                                                <  1:1240237/91‑1 (MQ=255)

                            aTAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTT‑TTTTTTACAACATAATGACAGGTACttt                                                               >  2:1402737/1‑91 (MQ=255)

                             tAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACttt                                                               >  1:861034/1‑91 (MQ=255)

                             tAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACttt                                                               >  2:1538296/1‑91 (MQ=255)

                              aaTTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTta                                                              >  1:2447960/1‑91 (MQ=255)

                              aaTTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTta                                                              <  2:2573390/91‑1 (MQ=255)

                               aTTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTtat                                                             >  2:1464120/1‑91 (MQ=255)

                                   tAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATAttt                                                         <  2:2157282/91‑1 (MQ=255)

                                    aaTAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTc                                                        >  2:3105579/1‑91 (MQ=255)

                                    aaTAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTc                                                        <  2:2879118/91‑1 (MQ=255)

                                    aaTAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTc                                                        >  1:1103949/1‑91 (MQ=255)

                                     aTAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCa                                                       <  1:32712/91‑1 (MQ=255)

                                     aTAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCa                                                       >  2:3347578/1‑91 (MQ=255)

                                      tAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCAc                                                      <  1:666519/91‑1 (MQ=255)

                                      tAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCAc                                                      <  1:3390490/91‑1 (MQ=255)

                                       aGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACt                                                     <  1:2870861/91‑1 (MQ=255)

                                         AAAACAGCAGTCAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGt                                                   >  1:3585217‑M1/1‑91 (MQ=255)

                                         AAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGt                                                   >  1:589355‑M1/1‑91 (MQ=255)

                                           AACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCa                                                 >  2:3067530‑M1/1‑91 (MQ=255)

                                            ACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCaa                                                <  2:1070‑M1/91‑1 (MQ=255)

                                            ACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCaa                                                <  1:1045364‑M1/91‑1 (MQ=255)

                                             CAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCaaa                                               <  1:3481751‑M1/91‑1 (MQ=255)

                                              agcagtaaggatgctaacacttagaaaagtcttactgctgttttTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAg                                              >  2:845682‑M2/45‑91 (MQ=255)

                                              AGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAg                                              <  1:2696674‑M1/91‑1 (MQ=255)

                                              AGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAg                                              >  2:3663233‑M1/1‑91 (MQ=255)

                                               gcagtaaggatgctaacacttagataagtcttactgctgttttTATTTGTAACAACATAATGACAGGTATTTTATATTTCACTGTCAATGa                                             >  2:1180209‑M2/44‑91 (MQ=255)

                                               GCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGa                                             >  2:1237894‑M1/1‑91 (MQ=255)

                                               GCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGa                                             >  2:3747344‑M1/1‑91 (MQ=255)

                                               GCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGa                                             >  1:3290840‑M1/1‑91 (MQ=255)

                                                CAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGat                                            <  2:312088‑M1/91‑1 (MQ=255)

                                                CAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGat                                            <  2:2356614‑M1/91‑1 (MQ=255)

                                                CAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGat                                            <  2:3232‑M1/91‑1 (MQ=255)

                                                CAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGGTCTTTATATTTCACTGTCAAAGat                                            <  2:748393‑M1/91‑1 (MQ=255)

                                                  GTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGatta                                          <  2:1638091‑M1/91‑1 (MQ=255)

                                                  GTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGatta                                          <  2:2498053‑M1/91‑1 (MQ=255)

                                                    AAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGattatt                                        >  2:1845436‑M1/1‑91 (MQ=255)

                                                    AAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGattatt                                        <  2:729309‑M1/91‑1 (MQ=255)

                                                    AAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGattatt                                        <  2:3601297‑M1/91‑1 (MQ=255)

                                                     aggatgctaacacttagaaaagtcttactgctgttttTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGAttatta                                       >  1:2665487‑M2/38‑91 (MQ=255)

                                                       gatgctaacacttagaaaagtcttactgctgttttTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAAt                                     >  2:109737‑M2/36‑91 (MQ=255)

                                                       aCTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAAt                                     >  1:1788456/1‑91 (MQ=255)

                                                       aCTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAAt                                     <  2:1363400/91‑1 (MQ=255)

                                                        atgctaacacttagaaaagtctcactgctgttttTATTTGTAACAACATAATGACCGGGACTTGATCTTTCACTCTCAAAGATTATTAATg                                    >  2:2003334‑M2/35‑91 (MQ=255)

                                                         ttttCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGa                                   <  1:1001802/91‑1 (MQ=255)

                                                         ttttCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGa                                   <  1:2752482/91‑1 (MQ=255)

                                                          tttCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGAt                                  >  1:214062/1‑91 (MQ=255)

                                                            tCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTa                                >  1:1940436/1‑91 (MQ=255)

                                                            tCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTa                                <  2:776332/91‑1 (MQ=255)

                                                             cTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTaa                               <  1:910877/91‑1 (MQ=255)

                                                                   gtTATCATCCTTACTGCTGTTTTTATTTGTAACAGTATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACttaat                         <  1:2092583/91‑1 (MQ=255)

                                                                   gtTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACttaat                         <  2:296221/91‑1 (MQ=255)

                                                                    ttAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACttaatt                        >  1:710914/1‑91 (MQ=255)

                                                                     tAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACttaatta                       <  2:2296275/91‑1 (MQ=255)

                                                                       gCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaa                     >  1:2491536/1‑91 (MQ=255)

                                                                       gCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaa                     >  1:995182/1‑91 (MQ=255)

                                                                        cATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaat                    <  2:2822306/91‑1 (MQ=255)

                                                                         aTCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaatt                   <  2:3693287/91‑1 (MQ=255)

                                                                          tCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTTCTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaatta                  >  2:459570/1‑91 (MQ=255)

                                                                          tCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaatta                  >  1:1890087/1‑91 (MQ=255)

                                                                          tCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaatta                  <  2:41406/91‑1 (MQ=255)

                                                                           ccTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTAt                 >  2:1013513/1‑91 (MQ=255)

                                                                             ttactgctgttttTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGa               >  2:2625852‑M2/14‑91 (MQ=255)

                                                                             ttactgctgttttTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGa               >  2:637005‑M2/14‑91 (MQ=255)

                                                                               actgctgttttTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGAtt             <  1:171586‑M2/80‑1 (MQ=255)

                                                                               actgctgttttTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGAtt             <  1:1379554‑M2/80‑1 (MQ=255)

                                                                                 tgctgttttTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTg           <  2:945494‑M2/82‑1 (MQ=255)

                                                                                 tgctgttttTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTg           <  2:569935‑M2/82‑1 (MQ=255)

                                                                                   ctgttttTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGaa         >  1:2402001‑M2/8‑91 (MQ=255)

                                                                                   ctgttttTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGaa         <  1:2580744‑M2/84‑1 (MQ=255)

                                                                                   ctgttttTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGaa         >  1:769090‑M2/8‑91 (MQ=255)

                                                                                   ctgttttTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGaa         <  1:3027536‑M2/84‑1 (MQ=255)

                                                                                     gttttTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGaata       >  2:3809662‑M2/6‑91 (MQ=255)

                                                                                      ttttTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGaataa      <  1:415506‑M2/87‑1 (MQ=255)

                                                                                          tATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAg  >  1:3696994/1‑91 (MQ=255)

TCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAG  >  USA300TCH1516_ALE/1708595‑1708775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.