BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1775185 =	146 (0.720)	16 (0.090)	7/142	NT	10.4%	intergenic (‑78/+76)	engB/clpX	putative GTP‑binding protein EngB/ATP‑dependent Clp protease ATP‑binding subunit ClpX
*	?	USA300TCH1516_ALE	1775239 =	146 (0.810)	16 (0.090)	7/142	NT	10.4%	intergenic (‑132/+22)	engB/clpX	putative GTP‑binding protein EngB/ATP‑dependent Clp protease ATP‑binding subunit ClpX

Only 100 of 234 total aligned reads displayed.

TTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTGGTTCAGTTTCTTC  >  USA300TCH1516_ALE/1775149‑1775329

ttATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTc                                                                                            >  2:177082/1‑91 (MQ=255)

ttATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTc                                                                                            <  1:183330/91‑1 (MQ=255)

ttATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTc                                                                                            <  1:3725073/91‑1 (MQ=255)

 tatataATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCa                                                                                           <  2:260054/91‑1 (MQ=255)

 tatataATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCa                                                                                           <  2:2018157/91‑1 (MQ=255)

 tatataATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCa                                                                                           >  1:3570944/1‑91 (MQ=255)

 tatataATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCa                                                                                           <  1:3696231/91‑1 (MQ=255)

  atataATATTTGAACCTTTCGGTACACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCAc                                                                                          <  1:1673093/91‑1 (MQ=255)

   tataATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACt                                                                                         <  1:3067300/91‑1 (MQ=255)

    ataataTTTGAACCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACtt                                                                                        <  2:2677691/91‑1 (MQ=255)

    ataataTTTGAACCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACtt                                                                                        >  2:3938333/1‑91 (MQ=255)

     taataTTTGAACCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACttt                                                                                       <  1:2916035/91‑1 (MQ=255)

        tatTTGAACCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTtat                                                                                    <  2:1842498/91‑1 (MQ=255)

         atTTGAACCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTtata                                                                                   >  1:994744/1‑91 (MQ=255)

          tttGAACCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATaa                                                                                  <  1:3467417/91‑1 (MQ=255)

              aaCCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAAcaca                                                                              >  1:3051029/1‑91 (MQ=255)

              aaCCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAAcaca                                                                              >  1:2836757/1‑91 (MQ=255)

              aaCCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGAGTGGAGCTTTTCACTTTTATAAcaca                                                                              >  1:3671634/1‑91 (MQ=255)

               aCCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACAt                                                                             >  1:633252/1‑91 (MQ=255)

               aCCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACAt                                                                             <  2:2292366/91‑1 (MQ=255)

                ccTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATc                                                                            <  1:15550/91‑1 (MQ=255)

                   ttCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAAt                                                                         >  2:3478372/1‑91 (MQ=255)

                    tCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATg                                                                        <  2:2322185/91‑1 (MQ=255)

                       gTATACATTATAAAAAAGCTCCGAGCAAAGTTAAACTATTTGAGCTTCAACTTTGATTGGAGCTTTTAACTTTTATAACACATCAATGAta                                                                     >  2:733956/1‑90 (MQ=255)

                         ataCATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTaa                                                                   <  1:2822216/91‑1 (MQ=255)

                         ataCATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTaa                                                                   <  1:865839/91‑1 (MQ=255)

                         ataCATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTaa                                                                   >  2:1342661/1‑91 (MQ=255)

                              ttATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGa                                                              <  1:3231313/91‑1 (MQ=255)

                               tataAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGAt                                                             >  1:174993/1‑91 (MQ=255)

                                ataAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATg                                                            >  1:791672/1‑91 (MQ=255)

                                 taAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGt                                                           >  1:2255437/1‑91 (MQ=255)

                                  aaaaaaGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGtt                                                          <  2:2841704/91‑1 (MQ=255)

                                   aaaaaGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTGTCACTTTTATAACACATCAATGATTAAGCTGATGttt                                                         >  1:2560644/1‑91 (MQ=255)

                                    AAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGtttt                                                        <  2:1902563‑M1/91‑1 (MQ=255)

                                      AAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTtaa                                                      <  2:3929742‑M1/91‑2 (MQ=255)

                                        gctccaatcaaagttgacgctcaaatagtttaactttgatcggagcttttCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACta                                                    >  2:639932‑M2/51‑91 (MQ=255)

                                        GCTCCGATCAAAGTTAAACTATTTGAGCGACAACTTTGATTGGAGCTTTTCACTTCTATAACACATCAATGATTAAGCTGATGTTTTActt                                                    <  2:1303627‑M1/91‑2 (MQ=255)

                                            caatcaaagttgacgctcaaatagtttaactttgatcggagcttttCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACtattat                                                >  1:2684222‑M2/47‑91 (MQ=255)

                                            caatcaaagttgacgctcaaatagtttaactttgatcggagcttttCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACtattat                                                >  1:448122‑M2/47‑91 (MQ=255)

                                            caatcaaagttgacgctcaaatagtttaactttgatcggagcttttCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACtattat                                                >  1:728547‑M2/47‑91 (MQ=255)

                                            CGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACtattat                                                >  2:330520‑M1/1‑91 (MQ=255)

                                            CGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACtattat                                                <  2:2914535‑M1/91‑1 (MQ=255)

                                             gATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTattatt                                               <  2:2588134/91‑1 (MQ=255)

                                             gATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTattatt                                               <  1:2628413/91‑1 (MQ=255)

                                             gATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTattatt                                               >  1:2747813/1‑91 (MQ=255)

                                             aatcaaagttgacgctcaaatagtttaactttgatcggagcttttCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTattatt                                               >  2:811891‑M2/46‑91 (MQ=255)

                                               tCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTattaa                                             <  1:210647/91‑1 (MQ=255)

                                               tCAAAGTTAAACTATTTGAGCGTCAACGTTGATTGGAGCTTTTCACTTTTATAGCACATCAATGATTAAGCGGATGGTTTACTATTattaa                                             <  2:1663884/91‑1 (MQ=255)

                                                cAAAGTTAAACTATTTGAGCGTCAACTTTGCTTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTattaat                                            >  1:3094963/1‑91 (MQ=255)

                                                 aaaGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTGTAACACATCGATGATTAAGCTGATGTTTTACTATTattaatt                                           <  2:1136222/91‑1 (MQ=255)

                                                 aaaGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTattaatt                                           >  1:3550205/1‑91 (MQ=255)

                                                   agttgacgctcaaatagtttaactttgatcggagcttttCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTAttaattaa                                         >  1:1657724‑M2/40‑91 (MQ=255)

                                                     ttAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAAt                                       <  1:207648/91‑1 (MQ=255)

                                                       aaaCTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTg                                     >  1:2773155/1‑91 (MQ=255)

                                                       aaaCTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTg                                     >  2:3450202/1‑91 (MQ=255)

                                                       aaaCTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTg                                     >  1:2414657/1‑91 (MQ=255)

                                                         aCTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGcc                                   <  2:1248380/91‑1 (MQ=255)

                                                         aCTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATAAAGCTGATGTTTTACTATTATTAATTAAATTGcc                                   <  2:1558153/91‑1 (MQ=255)

                                                          cTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCt                                  >  1:19755/1‑91 (MQ=255)

                                                          cTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCt                                  >  2:1876542/1‑91 (MQ=255)

                                                           tATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCtt                                 >  2:1412271/1‑91 (MQ=255)

                                                            aTTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTc                                <  2:2848702/91‑1 (MQ=255)

                                                            aTTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTc                                >  2:560162/1‑91 (MQ=255)

                                                              ttGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTg                              <  2:1672570/91‑1 (MQ=255)

                                                              ttGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTg                              <  1:2526959/91‑1 (MQ=255)

                                                               tGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGc                             <  2:1935680/91‑1 (MQ=255)

                                                                  gCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGcgtc                          >  2:3123377/1‑91 (MQ=255)

                                                                    gTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGcgtcgt                        <  2:2820393/91‑1 (MQ=255)

                                                                    gTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGcgtcgt                        <  2:1631884/91‑1 (MQ=255)

                                                                    gTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGcgtcgt                        <  2:631427/91‑1 (MQ=255)

                                                                    gTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGcgtcgt                        <  2:336413/91‑1 (MQ=255)

                                                                    gTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTGTTACTATTATTAATTAAATTGCCTTCTGcgtcgt                        <  2:3136724/91‑1 (MQ=255)

                                                                     tCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGta                       >  1:2125184/1‑91 (MQ=255)

                                                                       aaCTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGtata                     >  2:3221588/1‑91 (MQ=255)

                                                                       aaCTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGtata                     <  1:3772244/91‑1 (MQ=255)

                                                                        aCTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAg                    <  1:1218076/91‑1 (MQ=255)

                                                                         cTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGt                   <  2:1985354/91‑1 (MQ=255)

                                                                         cTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGt                   >  1:2952067/1‑91 (MQ=255)

                                                                         cTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGt                   <  2:3079653/91‑1 (MQ=255)

                                                                           ttGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTc                 >  1:2195458/1‑91 (MQ=255)

                                                                           ttGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGAAGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTc                 >  1:182062/1‑91 (MQ=255)

                                                                            tGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCt                <  2:796739/91‑1 (MQ=255)

                                                                             gATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTg               >  2:3794354/1‑91 (MQ=255)

                                                                             gATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTg               >  1:1032673/1‑91 (MQ=255)

                                                                             gATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTg               >  1:2987571/1‑91 (MQ=255)

                                                                              aTTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTGTAGTTCTgg              <  2:172833/91‑1 (MQ=255)

                                                                              aTTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTgg              <  1:738846/91‑1 (MQ=255)

                                                                              aTTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTgg              <  1:2354680/91‑1 (MQ=255)

                                                                               ttGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTGGt             <  2:1227895/91‑1 (MQ=255)

                                                                               ttGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTGGt             <  2:2507351/91‑1 (MQ=255)

                                                                               ttGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTGGt             >  1:820842/1‑91 (MQ=255)

                                                                                tGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTGGtt            <  2:2959759/91‑1 (MQ=255)

                                                                                 ggagcttttCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTGGTTc           <  2:3400862‑M2/82‑1 (MQ=255)

                                                                                   agcttttCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTGGTTCAg         >  2:51383‑M2/8‑91 (MQ=255)

                                                                                   agcttttCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTGGTTCAg         >  1:341338‑M2/8‑91 (MQ=255)

                                                                                   agcttttCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTGGTTCAg         >  1:3345480‑M2/8‑91 (MQ=255)

                                                                                       tttCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTGGTTCAGTttc     >  2:859442‑M2/4‑91 (MQ=255)

                                                                                       tttCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTGGTTCAGTttc     >  2:907382‑M2/4‑91 (MQ=255)

                                                                                        ttCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTGGTTCAGTttct    <  2:219849‑M2/89‑1 (MQ=255)

                                                                                         tCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTGGTTCAGTttctt   >  1:1323910‑M2/2‑91 (MQ=255)

TTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCGATCAAAGTTAAACTATTTGAGCGTCAACTTTGATTGGAGCTTTTCACTTTTATAACACATCAATGATTAAGCTGATGTTTTACTATTATTAATTAAATTGCCTTCTGCGTCGTATAGTTCTGGTTCAGTTTCTTC  >  USA300TCH1516_ALE/1775149‑1775329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.