BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1844653 =	249 (1.220)	12 (0.070)	9/142	NT	5.7%	intergenic (+50/+153)	mrcA/isdH	Penicillin‑binding protein 1A/Iron‑regulated surface determinant protein H
*	?	USA300TCH1516_ALE	1844699 =	176 (0.980)	12 (0.070)	9/142	NT	5.7%	intergenic (+96/+107)	mrcA/isdH	Penicillin‑binding protein 1A/Iron‑regulated surface determinant protein H

Only 100 of 270 total aligned reads displayed.

GCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCATACATA  >  USA300TCH1516_ALE/1844609‑1844789

gCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTc                                                                                            <  1:2124415/91‑1 (MQ=255)

  tCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCtt                                                                                          <  2:97050/91‑1 (MQ=255)

  tCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCtt                                                                                          <  2:2738676/91‑1 (MQ=255)

    aCTTTTTAAAGAAACCACAACAATGAATCCAAATATTAAAAGCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCtttt                                                                                        <  2:3466331/91‑1 (MQ=255)

       ttttAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTtttat                                                                                     <  1:623080/91‑1 (MQ=255)

        tttAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTtttatt                                                                                    <  2:775986/91‑1 (MQ=255)

        ttggtttaatggctttcctttagagtaaatattaaaAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTtttatt                                                                                    >  1:2112976‑M1/37‑91 (MQ=255)

         ttAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTtttattt                                                                                   <  1:3186932/91‑1 (MQ=255)

         ttAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTtttattt                                                                                   >  1:2455699/1‑91 (MQ=255)

           aaaGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTAc                                                                                 >  2:3699146/1‑91 (MQ=255)

           aaaGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTAc                                                                                 >  2:427366/1‑91 (MQ=255)

             aGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTActc                                                                               >  1:3837636/1‑91 (MQ=255)

             aGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTActc                                                                               >  2:3775617/1‑91 (MQ=255)

             aGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTActc                                                                               <  1:3747170/91‑1 (MQ=255)

              gTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTActct                                                                              >  1:2696922/1‑91 (MQ=255)

               tAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTa                                                                             <  2:2934337/91‑1 (MQ=255)

                 aCCACAACAATGAGTCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTaaa                                                                           <  2:197078/91‑1 (MQ=255)

                 aCCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTaaa                                                                           >  1:2514333/1‑91 (MQ=255)

                  ccACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAg                                                                          <  1:2176504/91‑1 (MQ=255)

                    acaacaATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGa                                                                        >  2:2145976/1‑91 (MQ=255)

                      aacaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGaaa                                                                      >  2:1514901/1‑91 (MQ=255)

                      aacaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGaaa                                                                      <  1:1197260/91‑1 (MQ=255)

                       acaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAg                                                                     >  1:1255396/1‑91 (MQ=255)

                       acaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAg                                                                     <  1:3451520/91‑1 (MQ=255)

                       acaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAg                                                                     >  1:1145175/1‑91 (MQ=255)

                       acaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAg                                                                     >  1:323886/1‑91 (MQ=255)

                        caaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGc                                                                    <  1:1340126/91‑1 (MQ=255)

                        caaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGc                                                                    >  1:730697/1‑91 (MQ=255)

                        caaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGc                                                                    >  1:2855676/1‑91 (MQ=255)

                         aaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGcc                                                                   <  2:2111126/91‑1 (MQ=255)

                         aaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGcc                                                                   <  2:1413232/91‑1 (MQ=255)

                          aTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCa                                                                  <  1:184352/91‑1 (MQ=255)

                           tGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCAt                                                                 <  2:446769/91‑1 (MQ=255)

                           tGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCAt                                                                 >  2:2282503/1‑91 (MQ=255)

                            gAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAGGGAAAGCCAtt                                                                >  1:3576520/1‑91 (MQ=255)

                            gAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCAtt                                                                >  1:2627940/1‑91 (MQ=255)

                             aaTCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTa                                                               >  1:939370/1‑91 (MQ=255)

                              aTCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTaa                                                              >  1:2443956/1‑91 (MQ=255)

                              aTCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTaa                                                              <  2:356544/91‑1 (MQ=255)

                                 cAAATATTAAAAGCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAAcc                                                           <  2:1627472/91‑1 (MQ=255)

                                  aaaTATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACca                                                          <  1:2252142/91‑1 (MQ=255)

                                  aaaTATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACca                                                          <  2:1923165/91‑1 (MQ=255)

                                   aaTATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACcaa                                                         >  2:1260838/1‑91 (MQ=255)

                                    atatTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACcaat                                                        >  1:894527/1‑91 (MQ=255)

                                    atatTAAAAACACCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACtaat                                                        >  1:3059028/1‑91 (MQ=255)

                                        tAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACcaatcaat                                                    >  1:589918/1‑91 (MQ=255)

                                         aaaaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATa                                                   >  1:1046799/1‑91 (MQ=255)

                                         aaaaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATa                                                   >  2:3210909/1‑91 (MQ=255)

                                          aaaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAg                                                  >  1:2213253/1‑91 (MQ=255)

                                           aaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGt                                                 >  2:470637/1‑91 (MQ=255)

                                           aaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGt                                                 >  2:1561658/1‑91 (MQ=255)

                                            AACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGtt                                                >  2:3322463‑M1/1‑91 (MQ=255)

                                              CAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTta                                              <  2:3941940‑M1/91‑1 (MQ=255)

                                               agcagtgagaaattttctaattgaaaataatcttactgctgttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTtat                                             >  1:1628031‑M2/44‑91 (MQ=255)

                                               AGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTtat                                             >  1:1440993‑M1/1‑91 (MQ=255)

                                               AGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTtat                                             <  2:3072056‑M1/91‑1 (MQ=255)

                                                gcagtgagaaattttctaattgaaaataatcttactgctgttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTtata                                            >  2:2261878‑M2/43‑91 (MQ=255)

                                                GCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTtata                                            <  1:937250‑M1/91‑1 (MQ=255)

                                                 CAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATaa                                           >  2:1358028‑M1/1‑91 (MQ=255)

                                                   GTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAAt                                         <  2:218650‑M1/91‑1 (MQ=255)

                                                   GTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAAt                                         >  1:258519‑M1/1‑91 (MQ=255)

                                                   GTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAAt                                         <  1:1463794‑M1/91‑1 (MQ=255)

                                                   GTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAAt                                         <  1:2916152‑M1/91‑1 (MQ=255)

                                                    TAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAAtt                                        >  2:2919103‑M1/1‑91 (MQ=255)

                                                    TAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAAtt                                        >  2:1019957‑M1/1‑91 (MQ=255)

                                                    TAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAAtt                                        >  1:3385588‑M1/1‑91 (MQ=255)

                                                    TAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAAtt                                        <  2:846029‑M1/91‑1 (MQ=255)

                                                      aGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAaattaa                                      <  1:2800831/91‑1 (MQ=255)

                                                       gATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAaattaat                                     <  2:2675364/91‑1 (MQ=255)

                                                        attattTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAaattaatt                                    >  2:3554590/1‑91 (MQ=255)

                                                          tattTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGc                                  <  2:2541261/91‑1 (MQ=255)

                                                          tattTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGc                                  <  2:2743582/91‑1 (MQ=255)

                                                          attttctaattgaaaataatcttactgctgttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGc                                  >  1:808484‑M2/33‑91 (MQ=255)

                                                            ttttCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCtt                                <  2:1815721/91‑1 (MQ=255)

                                                             tttCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCttt                               <  2:1238862/91‑1 (MQ=255)

                                                                cAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTcac                            <  2:2885528/91‑1 (MQ=255)

                                                                 aaTTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTcaca                           <  1:1994481/91‑1 (MQ=255)

                                                                   ttAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACAtt                         <  2:2455699/91‑1 (MQ=255)

                                                                   ttAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACAtt                         <  2:693426/91‑1 (MQ=255)

                                                                   ttAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACAtt                         <  1:569083/91‑1 (MQ=255)

                                                                     aGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGt                       <  2:2774111/91‑1 (MQ=255)

                                                                     aGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGt                       <  1:47633/91‑1 (MQ=255)

                                                                        aaaTTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTa                    >  1:1718527/1‑91 (MQ=255)

                                                                         aaTTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTAc                   <  1:1138232/91‑1 (MQ=255)

                                                                           tttCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACaa                 <  2:2900774/91‑1 (MQ=255)

                                                                             tctcACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAg               <  2:1306661/91‑1 (MQ=255)

                                                                             tctcACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAg               <  1:3424251/91‑1 (MQ=255)

                                                                             tctcACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAg               <  2:3132561/91‑1 (MQ=255)

                                                                              ctcACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAACCCAATCAATAGTTTATCAATTAATTGCTTTCACATTGTCTACAAAGt              >  2:1859544/1‑91 (MQ=255)

                                                                               tcACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGtt             >  2:5455/1‑91 (MQ=255)

                                                                                cACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTTTCTACAAAGTTa            >  2:1077125/1‑91 (MQ=255)

                                                                                 actgctgttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAACTTaa           >  1:3295261‑M2/10‑91 (MQ=255)

                                                                                   tgctgttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATc         <  2:3826746‑M2/84‑1 (MQ=255)

                                                                                    gctgttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATca        <  2:385137‑M2/85‑1 (MQ=255)

                                                                                    gctgttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATca        <  1:1776375‑M2/85‑1 (MQ=255)

                                                                                        ttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAatcataaa    >  2:3713461‑M2/3‑89 (MQ=255)

                                                                                        ttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATcataca    <  1:230218‑M2/89‑1 (MQ=255)

                                                                                         tCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATcatacat   <  1:431678‑M2/90‑1 (MQ=255)

                                                                                         tCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATcatacat   >  2:2083635‑M2/2‑91 (MQ=255)

                                                                                          cTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATcatacata  <  2:392054/91‑1 (MQ=255)

GCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCATACATA  >  USA300TCH1516_ALE/1844609‑1844789

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.