New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1858406122 (0.600)17 (0.110) 8/126 NT 13.6% intergenic (‑33/+41) USA300HOU_RS09235/USA300HOU_RS09240 hypothetical protein/hypothetical protein
?USA300TCH1516_ALE = 1858419 121 (0.760)intergenic (‑46/+28) USA300HOU_RS09235/USA300HOU_RS09240 hypothetical protein/hypothetical protein

Only 100 of 275 total aligned reads displayed.

TGTGTTTATTTTTTAATGTTCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTGCTACATTATTAGCTTTGTA  >  USA300TCH1516_ALE/1858328‑1858509
                                                                                           |                                                                                          
 gtgtTTATTTTTTAATGTTCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTc                                                                                            >  2:1284396/1‑91 (MQ=255)
 aatgtagcaactgatgcaaatcatagctatacttctagagtagataaataattaataattaAACAAATGCACTTAAATAAGTAACAACCTc                                                                                            >  2:683656‑M1/62‑91 (MQ=255)
 aatgtagcaactgatgcaaatcatagctatacttctagagtagataaataattaataattaAACAAATGCACTTAAATAAGTAACAACCTc                                                                                            >  1:3868139‑M1/62‑91 (MQ=255)
 aatgtagcaactgatgcaaatcagagctatacttctagagtagataaataattaataatgaAACAAATGCACTTAAATAAGTAACAACCTc                                                                                            >  2:3015701‑M1/62‑91 (MQ=255)
   ggtagcaactgatgcaaatcatagctatacttctagagtagataaataattaataattaAACAAATGCACTTAAATAAGTAACAACCTCAt                                                                                          >  2:2471383‑M1/60‑91 (MQ=255)
    tttATTTTTTAATGTTCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCatt                                                                                         >  1:3237093‑M2/1‑88 (MQ=255)
    tttATTTTTTAATGTTCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCCCatt                                                                                         <  2:1882349‑M2/91‑4 (MQ=255)
    gtagcaactgatgcaaatcatagctatacttctagagtagataaataattaataattaAACAAATGCACTTAAATAAGTAACAACCTCAtt                                                                                         >  2:1209378‑M1/59‑91 (MQ=255)
     tagcaactgatgcaaatcatagctatacttctagagtagataaataattaataattaAACAAATGCACTTAAATAAGTAACAACCTCAttt                                                                                        >  1:535885‑M1/58‑91 (MQ=255)
      tATTTTTTAATGTTCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATTACAAATGCACTTAAATAAGTAACAACCTCattta                                                                                       <  2:3591759‑M2/91‑6 (MQ=255)
       aTTTTTTAATGTTCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCatttaa                                                                                      <  2:3726883‑M2/91‑7 (MQ=255)
        ttttttAATGTTCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCatttaag                                                                                     >  1:3123461‑M2/1‑84 (MQ=255)
        ttttttAATGTTCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCatttaag                                                                                     >  2:3090258‑M2/1‑84 (MQ=255)
        ttttttAATGTTCTTTTATCATTTTGTTGCTGCGTCATTTGCATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCatttaag                                                                                     >  2:3479008‑M2/1‑84 (MQ=255)
        caactgatgcaaatcatagctatacttctagagtagataaataagtaataattaAACAAATGCACTTAAATAAGTAACAACCTCATTTAAg                                                                                     >  2:3544601‑M1/55‑91 (MQ=255)
         aactgatgcaaatcatagctatacttctagagtagataaataattaataattaAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGt                                                                                    >  2:2591974‑M1/54‑91 (MQ=255)
           tttAATGTTCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCatttaagtgc                                                                                  >  1:2271951‑M2/1‑81 (MQ=255)
           tttAATGTTCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCatttaagtgc                                                                                  >  2:3258410‑M2/1‑81 (MQ=255)
             tAATGTTCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCatttaagtgcat                                                                                <  2:3839292‑M2/91‑13 (MQ=255)
             tAATGTTCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCatttaactgcat                                                                                <  2:3642683‑M2/91‑13 (MQ=255)
              aaTGTTCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTAAACAAATGCACTTAAATAAGTAACAACCTCatttaagtgcattt                                                                              <  2:2774460‑M2/91‑15 (MQ=255)
               aTGTTCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCatttaagtgcattt                                                                              <  2:3334830‑M2/91‑15 (MQ=255)
               aTGTTCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCatttaagtgcatct                                                                              <  2:3836212‑M2/91‑15 (MQ=255)
                tGTTCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCatttaagtgcatttg                                                                             >  1:1175808‑M2/1‑76 (MQ=255)
                  ttCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCatttaagtgcatttgtt                                                                           <  2:326718‑M2/91‑18 (MQ=255)
                   tCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGttt                                                                          >  2:2518718/1‑91 (MQ=255)
                   aatcatagctatacttctagagtagataaataattaataattaAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGttt                                                                          >  1:2684568‑M1/44‑91 (MQ=255)
                      tttATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTttaat                                                                       <  2:1753465/91‑1 (MQ=255)
                          tCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTttaattatt                                                                   <  2:2878533/91‑1 (MQ=255)
                           cATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTttaattatta                                                                  <  1:2848330/91‑1 (MQ=255)
                           cATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTttaattatta                                                                  >  1:3617641/1‑91 (MQ=255)
                           cATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTttaattatta                                                                  <  2:2083659/91‑1 (MQ=255)
                            aTTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTttaattattaa                                                                 <  1:3934163/91‑1 (MQ=255)
                                tgttgCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTtaattattaattat                                                             >  2:409607/1‑91 (MQ=255)
                                  ttgCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAAttattt                                                           <  1:594680/91‑1 (MQ=255)
                                  ttgCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAAttattt                                                           >  1:1697372/1‑91 (MQ=255)
                                    tagagtagataaataattaataattaAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAAttatttat                                                         <  1:3481064‑M1/65‑1 (MQ=255)
                                    gctgcGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAAttatttat                                                         <  2:1576454/91‑1 (MQ=255)
                                    gctgcGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAAttatttat                                                         >  1:3612180/1‑91 (MQ=255)
                                    gctgcGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAAttatttat                                                         >  1:1356514/1‑91 (MQ=255)
                                     ctgcGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATc                                                        >  1:2375099/1‑91 (MQ=255)
                                      tgcGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCt                                                       <  2:391903/91‑1 (MQ=255)
                                        cGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTAc                                                     >  1:1471664/1‑91 (MQ=255)
                                          tCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTActc                                                   >  2:869928/1‑91 (MQ=255)
                                            aTTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTa                                                 <  1:1997645/91‑1 (MQ=255)
                                              ttGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGa                                               >  1:1749232/1‑91 (MQ=255)
                                               tGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGaa                                              >  1:917549/1‑91 (MQ=255)
                                                gTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAg                                             >  2:2325501/1‑91 (MQ=255)
                                                gTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAg                                             <  2:942379/91‑1 (MQ=255)
                                                  atatCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGta                                           <  1:1254129/91‑1 (MQ=255)
                                                   tatCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGtat                                          <  2:1124260/91‑1 (MQ=255)
                                                     tcctccTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAg                                        <  2:1430873/91‑1 (MQ=255)
                                                     tcctccTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAg                                        <  2:2534921/91‑1 (MQ=255)
                                                      cctcctATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGc                                       >  1:3165114/1‑91 (MQ=255)
                                                      cctcctATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGc                                       <  2:1656138/91‑1 (MQ=255)
                                                      cctcctATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGc                                       >  2:240857/1‑91 (MQ=255)
                                                        tcctATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTa                                     >  2:3608069/1‑91 (MQ=255)
                                                         cctATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTAt                                    <  1:196595/91‑1 (MQ=255)
                                                           tataACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGa                                  <  1:3716221/91‑1 (MQ=255)
                                                            ataACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGAt                                 >  2:1503253/1‑91 (MQ=255)
                                                            ataACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGAt                                 >  2:2854418/1‑91 (MQ=255)
                                                             taACACATGCACTTAAATAAGTAACAACCTCATTTAAGTGCAGTTGTTTAATCATTAATTATTTATCTACTCTAGCAGTATAGCTATGagt                                >  1:2788280/1‑89 (MQ=255)
                                                             taACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGAtt                                <  1:3770322/91‑1 (MQ=255)
                                                              AACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCACCTGTTTAATTATTAATCATTTATCTCCTCTAGAAGTATAGCTATGAttt                               <  2:1852706‑M1/91‑1 (MQ=255)
                                                               ACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTg                              <  1:1550888‑M1/91‑1 (MQ=255)
                                                               ACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTg                              <  1:2469242‑M1/91‑1 (MQ=255)
                                                                CAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGc                             >  2:2364984‑M1/1‑91 (MQ=255)
                                                                CAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGc                             <  2:1916600‑M1/91‑1 (MQ=255)
                                                                  AATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCAt                           >  2:2711731‑M1/1‑91 (MQ=255)
                                                                   ATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATc                          <  2:656943‑M1/91‑1 (MQ=255)
                                                                     gCACTTAAATAAGTAACAACCTCatttaagtgcatttgttataggaggatatacaaatgacgcagcaacaaaatgataaaagaacattaaa                        <  2:601241‑M2/91‑69 (MQ=255)
                                                                     GCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAg                        <  2:1108845‑M1/91‑1 (MQ=255)
                                                                     GCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAg                        <  1:3018408‑M1/91‑1 (MQ=255)
                                                                     GCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAg                        <  1:2528409‑M1/91‑1 (MQ=255)
                                                                      cACTTAAATAAGTAACAACCTCatttaagtgcatttgttataggaggatatacaaatgacgcagcaacaaaatgataaaagaacattaaaa                       <  2:3382041‑M2/91‑70 (MQ=255)
                                                                      CACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGt                       >  2:3152026‑M1/1‑91 (MQ=255)
                                                                       ACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGtt                      <  1:2582484‑M1/91‑1 (MQ=255)
                                                                        cTTAAATAAGTAACAACCTCatttaagtgcatttgttataggaggatatacaaatgacgcagcaacaaaatgataaaagaacattaaaaaa                     <  1:1016637‑M2/91‑72 (MQ=255)
                                                                        CTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTg                     <  1:905149‑M1/91‑1 (MQ=255)
                                                                          TAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTGCt                   <  2:457820‑M1/91‑1 (MQ=255)
                                                                          TAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTGCt                   <  2:1030951‑M1/91‑1 (MQ=255)
                                                                          TAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTGCt                   <  1:796446‑M1/91‑1 (MQ=255)
                                                                            aaTAAGTAACAACCTCatttaagtgcatttgttataggaggatatacaaatgacgcagcaacaaaatgataaaagcacattaaaaaataaa                 <  1:1621753‑M2/91‑76 (MQ=255)
                                                                            aaTAAGTAACAACCTCatttaagtgcatttgttataggaggatatacaaatgacgcagcaacaaaatgataaaagaacattaaaaaataaa                 <  2:2170317‑M2/91‑76 (MQ=255)
                                                                            aaTAAGTAACAACCTCatttaagtgcatttgttataggaggatatacaaatgacgcagcaacaaaatgataaaagaacattaaaaaataaa                 <  1:2636385‑M2/91‑76 (MQ=255)
                                                                             aTAAGTAACAACCTCatttaagtgcatttgttataggaggatatacaaatgacgcagcaacaaaatgataaaagaacattaaaaaataaac                <  1:2913799‑M2/91‑77 (MQ=255)
                                                                             ATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTGCTACa                >  2:1450524‑M1/1‑91 (MQ=255)
                                                                             ATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTGCTACa                >  2:505844‑M1/1‑91 (MQ=255)
                                                                              TAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTGCTACAt               >  1:2330492‑M1/1‑91 (MQ=255)
                                                                               aaGTAACAACCTCatttaagtgcatttgttataggaggatatacaaatgacgcagcaacaaaatgataaaagaacattaaaaaataaacac              <  1:577929‑M2/91‑79 (MQ=255)
                                                                                 gTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTGCTACattat            >  1:3517005/1‑91 (MQ=255)
                                                                                 gTAACAACCTCATTTAAGTGCATTTGTTTAATAATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTGCTACattat            >  2:3877858/1‑91 (MQ=255)
                                                                                  tAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTGCTACattatt           >  2:3333460/1‑91 (MQ=255)
                                                                                    acaacCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTGCTACATTATTAg         >  2:3514743/1‑91 (MQ=255)
                                                                                      aacCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTGCTACATTATTAGCt       <  2:3575532/91‑1 (MQ=255)
                                                                                        ccTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTGCTACATTATTAGCttt     <  2:2941069/91‑1 (MQ=255)
                                                                                         cTCATTTAAGTGCATTTGTTTAATTATTAATTCTTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTGCTACATTATTAGCTTTg    <  1:3364887/91‑1 (MQ=255)
                                                                                          tCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTGCTACATTATTAGCTTTGt   >  2:1772143/1‑91 (MQ=255)
                                                                                          tCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTGCTACATTATTAGCTTTGt   >  1:1093864/1‑91 (MQ=255)
                                                                                           cATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTGCTACATTATTAGCTTTGTa  >  2:2312519/1‑91 (MQ=255)
                                                                                           |                                                                                          
TGTGTTTATTTTTTAATGTTCTTTTATCATTTTGTTGCTGCGTCATTTGTATATCCTCCTATAACAAATGCACTTAAATAAGTAACAACCTCATTTAAGTGCATTTGTTTAATTATTAATTATTTATCTACTCTAGAAGTATAGCTATGATTTGCATCAGTTGCTACATTATTAGCTTTGTA  >  USA300TCH1516_ALE/1858328‑1858509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.