BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1867671 =	166 (0.810)	17 (0.090)	10/142	NT	9.7%	intergenic (+45/+80)	USA300HOU_RS09275/ytnP	hypothetical protein/putative quorum‑quenching lactonase YtnP
*	?	USA300TCH1516_ALE	1867709 =	170 (0.940)	17 (0.090)	10/142	NT	9.7%	intergenic (+83/+42)	USA300HOU_RS09275/ytnP	hypothetical protein/putative quorum‑quenching lactonase YtnP

Only 100 of 270 total aligned reads displayed.

AGCGTTAATACGAATTTTATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAATATATGCATCTATGTTT  >  USA300TCH1516_ALE/1867619‑1867799

   gTTAATACGAATTTTATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAAttt                                                                                         <  1:1490018/91‑1 (MQ=255)

      aaTACGAATTTTATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAAtttttt                                                                                      >  1:243833/1‑91 (MQ=255)

        tACGAATTTTATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTAt                                                                                    >  2:3002814/1‑91 (MQ=255)

        tACGAATTTTATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTAt                                                                                    <  2:1209932/91‑1 (MQ=255)

        tACGAATTTTATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTAt                                                                                    >  1:657461/1‑91 (MQ=255)

          cGAATTTTATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTAttt                                                                                  <  2:1286773/91‑1 (MQ=255)

           gAATTTTATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTAtttt                                                                                 <  2:3866684/91‑1 (MQ=255)

           gAATTTTATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTAtttt                                                                                 >  1:1412438/1‑91 (MQ=255)

           gAATTTTATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTAtttt                                                                                 <  1:2123484/91‑1 (MQ=255)

           gAATTTTATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTAtttt                                                                                 <  1:3266651/91‑1 (MQ=255)

           gAATTTTATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTAtttt                                                                                 <  1:1885719/91‑1 (MQ=255)

             aTTTTATCCATATTTGATTTGGATCGTAAAACTTAATAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTg                                                                               <  2:3566913/91‑1 (MQ=255)

             aTTTTATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTg                                                                               >  1:1369443/1‑91 (MQ=255)

              ttttATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGa                                                                              >  2:752031/1‑91 (MQ=255)

              ttttATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGa                                                                              <  1:2178684/91‑1 (MQ=255)

              ttttATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGa                                                                              <  2:3309106/91‑1 (MQ=255)

                ttATCCATATTTGATTTGGATCGTAAAACTTAAGAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGaaa                                                                            <  1:3238614/91‑1 (MQ=255)

                ttATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGaaa                                                                            >  2:2264797/1‑91 (MQ=255)

                ttATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGaaa                                                                            <  2:3088067/91‑1 (MQ=255)

                ttATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGaaa                                                                            <  1:1097966/91‑1 (MQ=255)

                  aTCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAAt                                                                          <  1:3380626/91‑1 (MQ=255)

                   tCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAAtt                                                                         <  1:12940/91‑1 (MQ=255)

                   tCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAAtt                                                                         >  1:2884627/1‑91 (MQ=255)

                     cATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGACAATTTg                                                                       >  2:2545211/1‑91 (MQ=255)

                      atatTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGt                                                                      >  2:2499153/1‑91 (MQ=255)

                           tgatttgGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGAAGTGGCTCAATTTTTTATTTTTTAAACTTTGTTTAGt                                                                 >  2:586949/1‑91 (MQ=255)

                            gatttgGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTa                                                                <  2:1057873/91‑1 (MQ=255)

                              tttgGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAAt                                                              >  2:2859557/1‑91 (MQ=255)

                               ttagATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATa                                                             <  2:2217292/88‑1 (MQ=255)

                                tgGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATAc                                                            >  1:303656/1‑91 (MQ=255)

                                tgGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATAc                                                            >  2:2101816/1‑91 (MQ=255)

                                 ggATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACa                                                           <  2:3720851/91‑1 (MQ=255)

                                  gATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGATAATTTGTTTAGTAATACAt                                                          >  2:1363258/1‑91 (MQ=255)

                                  gATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACAt                                                          >  1:2687805/1‑91 (MQ=255)

                                   aTCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATc                                                         <  2:281804/91‑1 (MQ=255)

                                   aTCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATc                                                         >  2:3652454/1‑91 (MQ=255)

                                   aTCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATc                                                         <  2:485227/91‑1 (MQ=255)

                                    tCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCt                                                        <  1:3904487/91‑1 (MQ=255)

                                     cGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCtt                                                       <  1:2854540/91‑1 (MQ=255)

                                     cGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCtt                                                       <  1:1481443/91‑1 (MQ=255)

                                        aaaaCTTAAAAATGAGCCACACCCTTATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTAt                                                    <  1:3686881/91‑1 (MQ=255)

                                        aaaaCTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTAt                                                    >  1:2938442/1‑91 (MQ=255)

                                         aaaCTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTAtt                                                   <  1:3419827/91‑1 (MQ=255)

                                         aaaCTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTAtt                                                   <  1:1746697/91‑1 (MQ=255)

                                           aCTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTAtttt                                                 <  1:2212623/91‑1 (MQ=255)

                                            cTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTa                                                >  1:164601/1‑91 (MQ=255)

                                            cTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTa                                                <  1:1806550/91‑1 (MQ=255)

                                               aaaaaTGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGtt                                             >  1:690809/1‑91 (MQ=255)

                                               aaaaaTGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGtt                                             <  1:837264/91‑1 (MQ=255)

                                               aaaaaTGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGtt                                             >  1:2956815/1‑91 (MQ=255)

                                                aaattgagccacatccaatcttactaattagggtgtggctcaATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGtta                                            >  2:3616589‑M2/43‑91 (MQ=255)

                                                aaaattgagccacatccaatcttactaattagggtgtggctcATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGtta                                            >  1:1972058‑M2/43‑91 (MQ=255)

                                                 aaaTGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGttat                                           >  1:2385845/1‑91 (MQ=255)

                                                  aaTGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGttatt                                          >  1:2768350/1‑91 (MQ=255)

                                                  aaTGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGttatt                                          >  1:2012389/1‑91 (MQ=255)

                                                     gagccacatccaatcttactaattagggtgtggctcaATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATc                                       >  1:528732‑M2/38‑91 (MQ=255)

                                                     GAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATc                                       >  2:2187281‑M1/1‑91 (MQ=255)

                                                     GAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATc                                       >  2:2042507‑M1/1‑91 (MQ=255)

                                                      AGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGTAAATTTGTTTAGTAATACATCTTTATTTTAgttattatta                                      <  2:2342746‑M1/91‑3 (MQ=255)

                                                       GCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCaa                                     >  1:1560084‑M1/1‑91 (MQ=255)

                                                        CCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAAc                                    <  2:258984‑M1/91‑1 (MQ=255)

                                                         CACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACt                                   >  2:1128445‑M1/1‑91 (MQ=255)

                                                         CACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACt                                   >  2:1953470‑M1/1‑91 (MQ=255)

                                                         CACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACt                                   >  2:2007403‑M1/1‑91 (MQ=255)

                                                           catccaatcttactaattagggtgtggctcaATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTaa                                 >  1:1268052‑M2/32‑91 (MQ=255)

                                                               caatcttactaattagggtgtggctcaATTTTTTATTTTTGATATTTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGtt                             >  2:3328073‑M2/28‑91 (MQ=255)

                                                                tAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGttt                            <  2:1487432/91‑1 (MQ=255)

                                                                tAATTAGTAAGATTGGATGGGGCTCAATTTTTTATTTTTGAAAATGTGTTTAGTAATACATCTTTA‑TTTAGTTATTATCAACTGATGTTTc                           <  2:1356169/91‑1 (MQ=255)

                                                                 atcttactaattagggtgtggctcaATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTc                           >  1:982541‑M2/26‑91 (MQ=255)

                                                                 aaTTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTc                           <  2:2395062/91‑1 (MQ=255)

                                                                  aTTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCa                          >  2:24332/1‑91 (MQ=255)

                                                                  aTTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCa                          >  2:2759535/1‑91 (MQ=255)

                                                                  aTTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCa                          <  2:3603592/91‑1 (MQ=255)

                                                                   ttAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCAc                         >  2:3765174/1‑91 (MQ=255)

                                                                   ttAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCAc                         <  2:1783092/91‑1 (MQ=255)

                                                                   ttAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCAc                         >  2:1396780/1‑91 (MQ=255)

                                                                     aGTAATATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGt                       <  2:3947341/91‑1 (MQ=255)

                                                                       tAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTaa                     >  2:3521528/1‑91 (MQ=255)

                                                                       tAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTaa                     >  2:2156106/1‑91 (MQ=255)

                                                                         aGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTaaaa                   <  1:3516842/91‑1 (MQ=255)

                                                                         aGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTaaaa                   >  1:2718891/1‑91 (MQ=255)

                                                                          gATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAat                  >  1:76134/1‑91 (MQ=255)

                                                                            ttGGATGTGGCTCAATTTTTTATTTTTTTTAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAActat                >  2:1685686/1‑91 (MQ=255)

                                                                             tGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAatata               <  2:1642674/91‑1 (MQ=255)

                                                                              ggATGTGGCTCAATTTTTTATTTTTGAGAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAatatat              <  1:1004596/91‑1 (MQ=255)

                                                                              ggATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAatatat              <  2:1193655/91‑1 (MQ=255)

                                                                              ggATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAatatat              <  1:964363/91‑1 (MQ=255)

                                                                              ggATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAatatat              <  1:2463689/91‑1 (MQ=255)

                                                                                aTGTGGCTCAATTTTTTATTTTTGATAATTTGCTTAGTAATACATCTTTATTCTAGTTATTATCAACTAATGTTTCTCGTAAAATATATGc            >  2:3884081/1‑91 (MQ=255)

                                                                                aTGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAATATATGc            >  2:3130601/1‑91 (MQ=255)

                                                                                aTGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAATATATGc            >  2:433434/1‑91 (MQ=255)

                                                                                aTGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAATATATGc            <  1:3788235/91‑1 (MQ=255)

                                                                                aTGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAATATATGc            >  1:2570728/1‑91 (MQ=255)

                                                                                 tgtggctcaATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAATATATGCa           <  1:413826‑M2/82‑1 (MQ=255)

                                                                                  gtggctcaATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAATATATGCAt          >  2:2627638‑M2/9‑91 (MQ=255)

                                                                                     gctcaATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAATATATGCATCTa       <  1:1515369‑M2/86‑1 (MQ=255)

                                                                                      ctcaATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAATATATGCATCTAt      <  2:3080547‑M2/87‑1 (MQ=255)

                                                                                      ctcaATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAATATATGCATCTAt      >  1:434763‑M2/5‑91 (MQ=255)

                                                                                        caATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAATATATGCATCTATGt    >  2:1479567‑M2/3‑91 (MQ=255)

                                                                                         aATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAATATATGCATCTATGtt   >  2:3410229‑M2/2‑91 (MQ=255)

AGCGTTAATACGAATTTTATCCATATTTGATTTGGATCGTAAAACTTAAAAATGAGCCACACCCTAATTAGTAAGATTGGATGTGGCTCAATTTTTTATTTTTGAAAATTTGTTTAGTAATACATCTTTATTTTAGTTATTATCAACTAATGTTTCACGTAAAATATATGCATCTATGTTT  >  USA300TCH1516_ALE/1867619‑1867799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.