BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1870541 =	223 (1.090)	24 (0.130)	15/144	NT	10.4%	intergenic (‑28/+522)	srkA/dat	Stress response kinase A/D‑alanine aminotransferase
*	?	USA300TCH1516_ALE	1870573 =	213 (1.160)	24 (0.130)	15/144	NT	10.4%	intergenic (‑60/+490)	srkA/dat	Stress response kinase A/D‑alanine aminotransferase

Only 100 of 318 total aligned reads displayed.

TGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAA  >  USA300TCH1516_ALE/1870484‑1870663

tgtCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCatat                                                                                           <  2:3254001/91‑1 (MQ=255)

 gtCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCatata                                                                                          >  2:581127/1‑91 (MQ=255)

  tCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCatatat                                                                                         >  2:1558021/1‑91 (MQ=255)

   ccACCCTAATTGATAATACGGAGCCAACTCGTCCACCTCACTTTCTGCAAGAACATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATAtt                                                                                        <  2:1080064/91‑1 (MQ=255)

   ccACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATAtt                                                                                        >  2:414510/1‑91 (MQ=255)

   acaataactatctggacataatatttgtaccagtatggtgttataaattagaaaATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATAtt                                                                                        >  1:1973845‑M1/55‑91 (MQ=255)

    cACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTc                                                                                       <  2:1947076/91‑1 (MQ=255)

     aCCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCt                                                                                      >  2:1868498/1‑91 (MQ=255)

     aCCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCt                                                                                      <  2:1724652/91‑1 (MQ=255)

      cccTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTa                                                                                     >  2:2933029/1‑91 (MQ=255)

       taattatctggacataatatttgtaccagtatggtgttataaattagaaaATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTaa                                                                                    >  1:3408608‑M1/51‑91 (MQ=255)

        ttatctggacataatatttgtaccagtatggtgttataaattagaatatatggctctagaaataggtttttcaagagccatATATTCTAAt                                                                                   <  2:2201893‑M2/10‑1 (MQ=255)

        cTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAAt                                                                                   <  2:2380658/91‑1 (MQ=255)

         tAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAAtt                                                                                  <  2:78826/91‑1 (MQ=255)

            ttGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGGTTTTCAAGAGCCATATATTCTAATTtat                                                                               <  2:2482774/91‑1 (MQ=255)

             tGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTtata                                                                              >  2:1242428/1‑91 (MQ=255)

              gATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATaa                                                                             >  1:2636541/1‑91 (MQ=255)

               aTAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAac                                                                            <  1:1075173/91‑1 (MQ=255)

               aTAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAac                                                                            <  1:2516811/91‑1 (MQ=255)

                tAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAaca                                                                           >  1:2691934/1‑91 (MQ=255)

                 aaaaCTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTACAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAacac                                                                          >  2:3467373/1‑91 (MQ=255)

                  aaaCTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACAcc                                                                         <  1:2036727/91‑1 (MQ=255)

                    aCTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCAt                                                                       >  1:3267350/1‑91 (MQ=255)

                       gCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACt                                                                    >  1:1711335/1‑91 (MQ=255)

                        cTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTg                                                                   >  2:624376/1‑91 (MQ=255)

                         tCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTgg                                                                  >  1:2384493/1‑91 (MQ=255)

                          ccAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGt                                                                 <  1:496553/91‑1 (MQ=255)

                          ccAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGt                                                                 <  2:3579863/91‑1 (MQ=255)

                            aaCTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTAc                                                               >  2:3132875/1‑91 (MQ=255)

                            aaCTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTAc                                                               >  2:2266199/1‑91 (MQ=255)

                            aaCTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTAc                                                               <  1:3638760/91‑1 (MQ=255)

                            aaCTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTAc                                                               >  1:3000306/1‑91 (MQ=255)

                             aCTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTCGAAATAGGTTTTTCGAGAGCCATATATTCTAATTTATAACACCATACTGGTACa                                                              >  2:2549138/1‑91 (MQ=255)

                             aCTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACa                                                              >  2:3541178/1‑91 (MQ=255)

                               tCGTCCGCCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACaaa                                                            <  2:3697443/91‑1 (MQ=255)

                                cGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAat                                                           >  2:3287533/1‑91 (MQ=255)

                                 gTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAata                                                          <  2:1306893/91‑1 (MQ=255)

                                   ccACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAAtatt                                                        >  1:1493229/1‑91 (MQ=255)

                                   ccACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAAtatt                                                        >  1:2081693/1‑91 (MQ=255)

                                    cACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAAtatta                                                       >  2:2968065/1‑91 (MQ=255)

                                     aCCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAAtattat                                                      <  2:2707600/91‑1 (MQ=255)

                                     aCCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAAtattat                                                      >  2:1814418/1‑91 (MQ=255)

                                      ccTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATg                                                     <  2:1169473/91‑1 (MQ=255)

                                      ccTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATg                                                     >  1:3276170/1‑91 (MQ=255)

                                       ctctctTGCAGTTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGt                                                    <  2:3514473/91‑1 (MQ=255)

                                         cACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTcc                                                  <  1:1171686/91‑1 (MQ=255)

                                           cTTTCAATTAGAAAATGGCTCTAGAATTAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACATATATTATGTCCAg                                                >  2:2236207/1‑91 (MQ=255)

                                           cTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAg                                                <  2:2300021/91‑1 (MQ=255)

                                             ttCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGAt                                              <  1:2752534/91‑1 (MQ=255)

                                             ttCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGAt                                              >  2:3893329/1‑91 (MQ=255)

                                             ttCAATTAGAAAAGGGCTCTAGAAATAGGGTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGAt                                              <  2:65335/91‑1 (MQ=255)

                                              tCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATa                                             >  1:1448601/1‑91 (MQ=255)

                                              tCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATa                                             >  1:1375654/1‑91 (MQ=255)

                                              tCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATa                                             >  1:2317596/1‑91 (MQ=255)

                                                ttagaatatatggctcttgaaaaacctatttctagagccat‑T‑TTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAatta                                         >  2:1013274‑M2/42‑91 (MQ=255)

                                                 aTTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAatt                                          >  1:405431/1‑91 (MQ=255)

                                                 aTTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAatt                                          >  2:696121/1‑91 (MQ=255)

                                                 aTTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAatt                                          >  2:476993/1‑91 (MQ=255)

                                                  ttagaatatatggctcttgaaaaacctatttcaagagccATCTTCTAATTTATAACACCATAGTGGTACAAATATTATGTCCAGACAatta                                         >  1:3426121‑M2/40‑91 (MQ=255)

                                                  ttAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAatta                                         <  1:1099854/91‑1 (MQ=255)

                                                  agaatatATGGCTCTTGAAAAACCTATTTCTAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAatta                                         <  2:1290088‑M1/84‑1 (MQ=255)

                                                   tAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAattat                                        >  2:3800424/1‑91 (MQ=255)

                                                   tAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAattat                                        >  2:1700031/1‑91 (MQ=255)

                                                   tAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAattat                                        >  1:3732246/1‑91 (MQ=255)

                                                    aGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAattatt                                       >  1:1795548/1‑91 (MQ=255)

                                                     gAAAATGGCTCTAGAAATAGGTTTTTCTTTTTTTTTATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTg                                      >  2:543380/1‑91 (MQ=255)

                                                     gAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTg                                      >  2:205568/1‑91 (MQ=255)

                                                     gAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTg                                      <  1:2184790/91‑1 (MQ=255)

                                                     gAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTg                                      >  1:3510691/1‑91 (MQ=255)

                                                      tatATGGCTCTTGAAAAACCTATTTCTAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGt                                     <  2:3391915‑M1/88‑1 (MQ=255)

                                                       aaaTGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTa                                    >  1:2437532/1‑91 (MQ=255)

                                                       aaaTGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTa                                    >  1:3393597/1‑91 (MQ=255)

                                                       aaaTGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTa                                    >  2:1477345/1‑91 (MQ=255)

                                                           gtCTCTAGAAATAAGTTTTACAAGAGACATATATTCTAATTTATAACACCATACTGGTACAAAGATTATGTCCAGATAATTATTGTAGATc                                >  2:190693‑M1/3‑91 (MQ=255)

                                                           GGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATc                                <  1:527887‑M1/91‑1 (MQ=255)

                                                           GGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATc                                >  1:56253‑M1/1‑91 (MQ=255)

                                                              TCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTc                             <  2:1618862‑M1/91‑1 (MQ=255)

                                                                 tgaaaaacctatttctagagccatATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGAAAATCCTcaaa                          >  2:3466951‑M2/25‑90 (MQ=255)

                                                                  gAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAAcc                         <  1:2468784/91‑1 (MQ=255)

                                                                  gAAATAGGTTTTTCAAGAGCCATATATTCTAAGTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAAcc                         <  1:3371241/91‑1 (MQ=255)

                                                                   aaaaacctatttctagagccatATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCa                        >  2:3844397‑M2/23‑91 (MQ=255)

                                                                    aaTAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCaa                       >  2:3867031/1‑91 (MQ=255)

                                                                     aaacctatttctagagccatATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCATCCAAt                      >  2:3651939‑M2/21‑91 (MQ=255)

                                                                      aacctatttctagagccatATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATg                     >  2:342313‑M2/20‑91 (MQ=255)

                                                                       aGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGc                    >  1:2819365/1‑91 (MQ=255)

                                                                        ggTTTTTCAGGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGcc                   <  1:3782408/91‑1 (MQ=255)

                                                                        ggTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGcc                   <  1:1845804/91‑1 (MQ=255)

                                                                        ggTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGcc                   <  1:2128688/91‑1 (MQ=255)

                                                                         gTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCt                  >  1:1188978/1‑91 (MQ=255)

                                                                          tttttCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTa                 <  1:760614/91‑1 (MQ=255)

                                                                           ttttCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTAc                >  2:2890168/1‑91 (MQ=255)

                                                                            tttCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACa               >  1:2330950/1‑91 (MQ=255)

                                                                              tCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACAtt             >  2:2651945/1‑91 (MQ=255)

                                                                              tCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACAtt             >  1:81232/1‑91 (MQ=255)

                                                                               ctagagccatATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTa            >  1:3126648‑M2/11‑91 (MQ=255)

                                                                               cAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTa            <  1:1257418/91‑1 (MQ=255)

                                                                                  gagccatATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTacac         >  1:66287‑M2/8‑91 (MQ=255)

                                                                                  gagccatATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTacac         >  1:161756‑M2/8‑91 (MQ=255)

                                                                                       atATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTa    <  2:2561573‑M2/89‑1 (MQ=255)

                                                                                         atatTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTaaa  >  1:626884/1‑91 (MQ=255)

TGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAATAGGTTTTTCAAGAGCCATATATTCTAATTTATAACACCATACTGGTACAAATATTATGTCCAGATAATTATTGTAAATCCTCAACCAATGCCTACATTACACGACTAAA  >  USA300TCH1516_ALE/1870484‑1870663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.