BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1895575	168 (0.820)	16 (0.090)	9/142	NT	9.0%	intergenic (+27/+95)	putB/ribH	Proline dehydrogenase 2/6,7‑dimethyl‑8‑ribityllumazine synthase
*	?	USA300TCH1516_ALE	= 1895601	174 (0.960)	16 (0.090)	9/142	NT	9.0%	intergenic (+53/+69)	putB/ribH	Proline dehydrogenase 2/6,7‑dimethyl‑8‑ribityllumazine synthase

Only 100 of 230 total aligned reads displayed.

TAGGTTTAAGTACAATTAAAAAATTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTATGCTTTTATAGATTTTAAT  >  USA300TCH1516_ALE/1895511‑1895691

tAGGTTTAAGTACAATTAAAAAATTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAgg                                                                                            <  2:780122/91‑1 (MQ=255)

tAGGTTTAAGTACAATTAAAAAATTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAgg                                                                                            >  1:2920748/1‑91 (MQ=255)

 aGGTTTAAGTACAATTAAAAAATTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGc                                                                                           >  2:2218911‑M2/1‑90 (MQ=255)

   gTTTAAGTACAATTAAAAAATTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGctc                                                                                         >  1:1360320‑M2/1‑88 (MQ=255)

   gTTTAAGTACAATTAAAAAATTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGctc                                                                                         <  2:1889685‑M2/91‑4 (MQ=255)

    tttAAGTACAATTAAAAAATTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGctcc                                                                                        <  1:3540414‑M2/91‑5 (MQ=255)

        aGTACAATTAAAAAATTATGCCGTAAATAGAGCAAGACATAAACAATGATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGctcctaaa                                                                                    >  2:1761513‑M2/1‑83 (MQ=255)

        aGTACAATTAAAAAATTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGctcctaaa                                                                                    <  1:2191663‑M2/91‑9 (MQ=255)

        aGTACAAATAAAAAATTATGCCGGAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGctcctaaa                                                                                    >  2:844402‑M2/1‑83 (MQ=255)

         gTACAATTAAAAAATTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGctcctaaat                                                                                   <  1:2349493‑M2/91‑10 (MQ=255)

          tACAATTAAAAAATTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATg                                                                                  <  2:3454285/91‑1 (MQ=255)

          tACAATTAAAAAATTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATg                                                                                  <  2:1572772/91‑1 (MQ=255)

            cAATTAAAAAATTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGtt                                                                                >  2:2318019/1‑91 (MQ=255)

            cAATTAAAAAATTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGtt                                                                                >  1:3754373/1‑91 (MQ=255)

             aaTTAAAAAATTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTta                                                                               >  1:826145/1‑91 (MQ=255)

               ttAAAAAATTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTtata                                                                             >  1:1142222/1‑91 (MQ=255)

                   aaaaTTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTgg                                                                         <  1:2394102/91‑1 (MQ=255)

                   aaaaTTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTgg                                                                         >  2:460548/1‑91 (MQ=255)

                    aaaTTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGc                                                                        >  1:575905/1‑91 (MQ=255)

                    aaaTTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGc                                                                        <  1:3736286/91‑1 (MQ=255)

                     aaTTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCa                                                                       <  1:3663279/91‑1 (MQ=255)

                     aaTTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCa                                                                       <  1:777712/91‑1 (MQ=255)

                     aaTTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCa                                                                       <  1:1694142/91‑1 (MQ=255)

                     aaTTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCa                                                                       >  1:2495819/1‑91 (MQ=255)

                         aTGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTc                                                                   >  1:1578617/1‑91 (MQ=255)

                          tGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCt                                                                  <  1:2191288/91‑1 (MQ=255)

                           gCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTg                                                                 <  2:1413936/91‑1 (MQ=255)

                           gCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTg                                                                 >  2:2432654/1‑91 (MQ=255)

                            ccGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGa                                                                <  1:3173855/91‑1 (MQ=255)

                             cGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGaa                                                               <  2:2779913/91‑1 (MQ=255)

                              gTAAATATAGCAAGACATAAACGATAATGTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGaaa                                                              <  2:2628550/91‑1 (MQ=255)

                              gTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGaaa                                                              >  1:2511660/1‑91 (MQ=255)

                                aaaTAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACa                                                            <  1:3869714/91‑1 (MQ=255)

                                 aaTAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATGATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACAt                                                           >  2:3051554/1‑91 (MQ=255)

                                    agagCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTta                                                        <  2:445920/91‑1 (MQ=255)

                                    agagCAAGACATAAACAAGAGTTGAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTta                                                        <  2:850081/91‑1 (MQ=255)

                                     gagCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTtat                                                       <  2:1650686/91‑1 (MQ=255)

                                       gCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAACCATTTATaa                                                     >  1:146218/1‑91 (MQ=255)

                                       gCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATaa                                                     >  2:3317699/1‑91 (MQ=255)

                                        cAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATaaa                                                    >  2:2532600/1‑91 (MQ=255)

                                        cAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATaaa                                                    >  1:326854/1‑91 (MQ=255)

                                          aGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATc                                                  <  2:2131512/91‑1 (MQ=255)

                                          aGACATAAACAATAATGTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATc                                                  <  1:524556/91‑1 (MQ=255)

                                           gACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCt                                                 <  1:2992039/91‑1 (MQ=255)

                                            aCATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCtt                                                <  1:936618/91‑1 (MQ=255)

                                            aCATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCtt                                                <  2:3409593/91‑1 (MQ=255)

                                             cATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCttt                                               <  1:1722448/91‑1 (MQ=255)

                                              aTAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTg                                              <  2:387605/91‑1 (MQ=255)

                                              aTAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTg                                              <  2:3167333/91‑1 (MQ=255)

                                               tAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGa                                             <  2:887237/91‑1 (MQ=255)

                                                  aCAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTa                                          >  1:295068/1‑91 (MQ=255)

                                                  aCAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTa                                          >  2:2994763/1‑91 (MQ=255)

                                                  aCAATAAGTTAGGAGGCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTGGATTa                                          <  2:503435/91‑1 (MQ=255)

                                                   cAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTAt                                         >  1:1932267/1‑91 (MQ=255)

                                                   cAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTAt                                         >  2:797935/1‑91 (MQ=255)

                                                   cAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTAt                                         >  2:2023118/1‑91 (MQ=255)

                                                    aataatTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATg                                        >  1:3718346/1‑91 (MQ=255)

                                                    aataatTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATg                                        <  1:1819479/91‑1 (MQ=255)

                                                      taatTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGaa                                      <  1:3645432/91‑1 (MQ=255)

                                                       aatTTAGGAGTCTGGAACAATAATCTATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAAc                                     <  1:3689940/91‑1 (MQ=255)

                                                       aatTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAAc                                     >  1:499040/1‑91 (MQ=255)

                                                       aatTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAAc                                     <  1:986203/91‑1 (MQ=255)

                                                         tttAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTc                                   >  1:2809355/1‑91 (MQ=255)

                                                         tttAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTc                                   <  1:100843/91‑1 (MQ=255)

                                                         tttAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTGTGATTATGAACTc                                   >  1:3954112/1‑91 (MQ=255)

                                                          ttAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTca                                  >  1:2703000/1‑91 (MQ=255)

                                                           tAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTcac                                 >  2:2975538/1‑91 (MQ=255)

                                                           tAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTcac                                 <  2:1675321/91‑1 (MQ=255)

                                                            aGGAGTCTGGAACAATAATCAATGTTCTAGGctcctaaattattgtttatgtcttgctctatttacggcataattttttaattgtacttaa                                <  2:526262‑M2/91‑61 (MQ=255)

                                                            aGGAGTCTGGAACAATAATCAATGTTCTAGGctcctaaattattgtttatgtcttgctctatttacggcataattttttaattgtacttaa                                <  2:257171‑M2/91‑61 (MQ=255)

                                                            aGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTcaca                                >  1:2655604/1‑91 (MQ=255)

                                                              gAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCacaac                              >  2:1703135/1‑91 (MQ=255)

                                                               aGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATATTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCacaaca                             >  1:3334845/1‑91 (MQ=255)

                                                                   tGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGACACATTTATAAATCTTTGATTATGAGCTCACAACAGTGc                         <  2:1232797/91‑1 (MQ=255)

                                                                   tGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGc                         <  1:1985123/91‑1 (MQ=255)

                                                                    ggAACAATAATCAATGTTCTAGGctcctaaattattgtttatgtcttgctctatttacggcataattttttaattgtacttaaacctaaca                        <  1:548255‑M2/91‑69 (MQ=255)

                                                                     gAACAATAATCAATGTTCTAGGctcctaaattattgtttatgtcttgctctatttacggcataattttttaattgtacttaaacctaacat                       <  1:1160487‑M2/91‑70 (MQ=255)

                                                                     gAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGctc                       <  1:417559/91‑1 (MQ=255)

                                                                     gAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGctc                       <  2:3261870/91‑1 (MQ=255)

                                                                      aaCAATAATCAATGTTCTAGGctcctaaattattgtttatgtcttgctctatttacggcataattttttaattgtacttaaacctaacata                      <  2:1032657‑M2/91‑71 (MQ=255)

                                                                      aaCAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGctct                      <  2:1150121/91‑1 (MQ=255)

                                                                       aCAATAATCAATGTTCTAGGctcctaaattattgtttatgtcttgctctatttacggcataattttttaattgtacttaaacctaacataa                     <  1:1193834‑M2/91‑72 (MQ=255)

                                                                       aCAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTa                     >  1:1799085/1‑91 (MQ=255)

                                                                       aCAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTa                     >  1:3775732/1‑91 (MQ=255)

                                                                       aCAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTa                     >  2:2582976/1‑91 (MQ=255)

                                                                             atCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTATGCttt               <  2:236850/91‑1 (MQ=255)

                                                                              tcgaTGTTCTAGGCTCCTAAATGTGATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAGCTCACAACAGTGCTCTATGCtttt              <  2:3670089/88‑1 (MQ=255)

                                                                               cAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTATGCTTTta             >  2:2101253/1‑91 (MQ=255)

                                                                               cAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTATGCTTTta             >  2:613519/1‑91 (MQ=255)

                                                                                aaTGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTATGCTTTtat            <  1:3849337/91‑1 (MQ=255)

                                                                                aaTGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTATGCTTTtat            <  1:644688/91‑1 (MQ=255)

                                                                                 aTGTTCTAGGCTCCTAACTGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTATGCTTTtata           >  2:1334124/1‑91 (MQ=255)

                                                                                   gTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTATGCTTTTATAGa         <  1:738672/91‑1 (MQ=255)

                                                                                     tCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTATGCTTTTATAGAtt       <  2:393401/91‑1 (MQ=255)

                                                                                     tCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTATGCTTTTATAGAtt       <  2:2832457/91‑1 (MQ=255)

                                                                                      cTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTATGCTTTTATAGAttt      <  1:2318019/91‑1 (MQ=255)

                                                                                        aGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTATGCTTTTATAGATTTta    >  1:1877304/1‑91 (MQ=255)

                                                                                         ggCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTATGCTTTTATAGATTTtaa   <  2:3895576/91‑1 (MQ=255)

                                                                                         ggCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTATGCTTTTATAGATTTtaa   >  1:142393/1‑91 (MQ=255)

                                                                                          gCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTATGCTTTTATAGATTTtaat  <  2:3235729/91‑1 (MQ=255)

TAGGTTTAAGTACAATTAAAAAATTATGCCGTAAATAGAGCAAGACATAAACAATAATTTAGGAGTCTGGAACAATAATCAATGTTCTAGGCTCCTAAATGTTATATTGGCAGTTCTGAAACATTTATAAATCTTTGATTATGAACTCACAACAGTGCTCTATGCTTTTATAGATTTTAAT  >  USA300TCH1516_ALE/1895511‑1895691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.