BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1904457 =	247 (1.210)	24 (0.130)	15/146	NT	9.8%	coding (239/855 nt)	atl_2	Bifunctional autolysin
*	?	USA300TCH1516_ALE	1904477 =	217 (1.170)	24 (0.130)	15/146	NT	9.8%	coding (219/855 nt)	atl_2	Bifunctional autolysin

Only 100 of 312 total aligned reads displayed.

AAATTGATATTTTTGCTTTTCATTATCGATAAAAGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACATTTAACTTTTCAATCTT  >  USA300TCH1516_ALE/1904387‑1904566

aaaTTGATATTTTTGCTTTTCATTATCGATAAAAGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGcatca                                                                                           <  2:1408266/91‑1 (MQ=255)

  cattaaacgatgcagcaaagaaacaaataaataattatacgagtcaacaggtatcaaataaaaagaatGATGCATCTCTCCATGCATCAtt                                                                                         >  1:619307‑M1/69‑91 (MQ=255)

    tGATATTTTTGCTTTTCATTATCGATAAAAGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCt                                                                                       >  1:1666435/1‑91 (MQ=255)

     gATATTTTTGCTTTTCATTATCGATAAAAGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCtt                                                                                      <  1:3204726/91‑1 (MQ=255)

      atatTTTTGCTTTTTATTATCGTTAAAAGTACCCATATTTATTGCACTTTTAATTTCATTTGCAGATGCATCTTTCCGTGTATCATTCttt                                                                                     >  2:2913438/1‑91 (MQ=255)

       tatTTTTGCTTTTCATTATCGATAAAAGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCtttt                                                                                    >  1:624510/1‑91 (MQ=255)

       tatTTTTGCTTTTCATTATCGATAAAAGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCtttt                                                                                    <  2:3055774/91‑1 (MQ=255)

         cgatgcagcaaagaaacaaataaataattatacgagtcaacaggtatcaaataaaaagaatGATGCATCTCTCCATGCATCATTCTTTTTa                                                                                  >  1:2113051‑M1/62‑91 (MQ=255)

             tGCTTTTCATTATCGATAAAAGTACCGCTATCCATTGCACTTTTAATTTCAGATGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTg                                                                              <  2:1658215/91‑1 (MQ=255)

                ttttCATTATCGATAAAAGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATa                                                                           <  2:3490940/91‑1 (MQ=255)

                ttttCATTATCGATAAAAGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATa                                                                           <  2:2158071/91‑1 (MQ=255)

                tcaaagaaacaaataaataattatacgagtcaacaggtatcaaataaaaataatgatgcatctctccatgcatcATTCTTTTTATTTGATa                                                                           <  2:3923495‑M2/17‑1 (MQ=255)

                 tttCATTATCGATAAAAGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATAc                                                                          <  1:2469309/91‑1 (MQ=255)

                   tCATTATCGATAAAAGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCt                                                                        <  2:935500/91‑1 (MQ=255)

                        aTCGATAAAAGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGa                                                                   >  1:3795018/1‑91 (MQ=255)

                        aTCGATAAAAGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGa                                                                   >  1:850745/1‑91 (MQ=255)

                        aTCGATAAAAGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGa                                                                   >  2:590531/1‑91 (MQ=255)

                             tacaaGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCACCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGCCTCGt                                                              >  2:3172261/4‑91 (MQ=255)

                             tAAAAGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGt                                                              >  1:3530455/1‑91 (MQ=255)

                             tAAAAGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCAACATTCTTTTTATTTGATACCTGTTGACTCGt                                                              <  1:2641300/91‑1 (MQ=255)

                             tAAAAGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCAACATTCTTTTTATTTGATACCTGTTGACTCGt                                                              <  1:1489057/91‑1 (MQ=255)

                              aaaaGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGta                                                             <  1:2021427/91‑1 (MQ=255)

                                aaGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGtata                                                           >  1:395490/1‑91 (MQ=255)

                                 aGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATaa                                                          <  2:2798268/91‑1 (MQ=255)

                                   attatacgagtcaacaggtatcaaataaaaagaatGATGCATGGAGAGATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAatt                                                        <  1:1817215‑M1/56‑1 (MQ=255)

                                    aCCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAatta                                                       >  1:389411/1‑91 (MQ=255)

                                    aCCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAatta                                                       <  1:1620671/91‑1 (MQ=255)

                                    aCCGCTATCCATTGCACTTTTAATTTCAGTTGCAAATGAATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTGGTATAatta                                                       <  2:1125295/91‑1 (MQ=255)

                                     ccGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAattat                                                      >  2:1211999/1‑91 (MQ=255)

                                     ccGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAattat                                                      >  2:2313508/1‑91 (MQ=255)

                                      cGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAattatt                                                     >  1:3382349/1‑91 (MQ=255)

                                        cTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAAttattta                                                   <  2:3074782/91‑1 (MQ=255)

                                        cTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAAttattta                                                   <  2:2392434/91‑1 (MQ=255)

                                         tATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAAttatttat                                                  >  2:1147620/1‑91 (MQ=255)

                                         tATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAAttatttat                                                  >  2:2075308/1‑91 (MQ=255)

                                         tATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAAttatttat                                                  <  2:2847956/91‑1 (MQ=255)

                                         tATCCATTGCACTTTTAATATCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAAttatttat                                                  >  2:3457708/1‑91 (MQ=255)

                                          aTCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATtatttatt                                                 <  1:1342708/91‑1 (MQ=255)

                                          aTCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATtatttatt                                                 >  1:2283538/1‑91 (MQ=255)

                                          aTCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATtatttatt                                                 <  2:3133947/91‑1 (MQ=255)

                                           tCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTatttattt                                                <  2:1277989/91‑1 (MQ=255)

                                            ccATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTg                                               <  1:3133292/91‑1 (MQ=255)

                                            ccATTGCACTTTTAATTTCAGTTGCAGATGCATCGCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATCATTATTTATTTg                                               <  2:3173600/91‑1 (MQ=255)

                                             cATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGt                                              <  2:3886023/91‑1 (MQ=255)

                                             cATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGt                                              <  2:454419/91‑1 (MQ=255)

                                              aTTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGtt                                             >  2:84737/1‑91 (MQ=255)

                                               ttGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGttt                                            <  2:1734230/91‑1 (MQ=255)

                                               ttGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTACTTGATACCTGTTGACTCGTATAATTATTTTTTTGttt                                            >  2:1437979/1‑91 (MQ=255)

                                                 gCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCt                                          >  1:3021896/1‑91 (MQ=255)

                                                   aCTTTTAATTTCAGTTGCAGATGCACCTCTCCAGTCATCATTCTTTTTATTCGATACCTGTTGACTCGTATAATTATTTATTTGTTTCttt                                        <  2:2263146/91‑1 (MQ=255)

                                                    cTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTtg                                       >  1:3270061/1‑91 (MQ=255)

                                                    cTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTtg                                       <  2:150575/91‑1 (MQ=255)

                                                      tttAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTtgct                                     >  1:3619142/1‑91 (MQ=255)

                                                        tAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTtgctgc                                   <  1:371049/91‑1 (MQ=255)

                                                        tAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTtgctgc                                   <  1:42737/91‑1 (MQ=255)

                                                        tAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTtgctgc                                   <  1:1540722/91‑1 (MQ=255)

                                                        tAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTtgctgc                                   >  1:3429/1‑91 (MQ=255)

                                                        tAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTtgctgc                                   >  1:2140926/1‑91 (MQ=255)

                                                         aaTTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCa                                  >  1:1967614/1‑91 (MQ=255)

                                                         aaTTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCa                                  <  1:2488070/91‑1 (MQ=255)

                                                          aTTTCAGTTGCAGATGCATCTCTCCATGTATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCAt                                 <  1:722639/91‑1 (MQ=255)

                                                          aTTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCAt                                 <  1:2780052/91‑1 (MQ=255)

                                                          aTTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCAt                                 >  2:621515/1‑91 (MQ=255)

                                                          aTTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCAt                                 <  2:1007189/91‑1 (MQ=255)

                                                            ttCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCg                               >  1:2849924/1‑91 (MQ=255)

                                                            ttCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCg                               >  1:2397613/1‑91 (MQ=255)

                                                            ttCAGTTGCAGATGCATCTCTCCACGCATCATTCTTTTTATTTGATACCTTTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCg                               <  2:3664181/91‑1 (MQ=255)

                                                              cAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGtt                             >  2:719669/1‑91 (MQ=255)

                                                              cAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGtt                             >  2:3309883/1‑91 (MQ=255)

                                                              cAGTTGCAGATACATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTAGAATTATTTATTTGTTTCTTTGCTGCATCGtt                             <  2:3018475/91‑1 (MQ=255)

                                                                gTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTa                           >  2:2290842/1‑91 (MQ=255)

                                                                aagaatgatgcatggagagatgcatcATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTa                           >  1:1706510‑M2/27‑91 (MQ=255)

                                                                   gCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATg                        >  1:2736936/1‑91 (MQ=255)

                                                                   aatgatgcatggagagatgcatcATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATg                        >  1:619325‑M2/24‑91 (MQ=255)

                                                                    cAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGt                       >  2:1619425/1‑91 (MQ=255)

                                                                    cAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGt                       >  2:902532/1‑91 (MQ=255)

                                                                    cAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGt                       <  2:1981062/91‑1 (MQ=255)

                                                                    atgatgcatggagagatgcatcATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGt                       >  2:560143‑M2/23‑91 (MQ=255)

                                                                    atgatgcatggagagatgcatcATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGt                       >  1:2763017‑M2/23‑91 (MQ=255)

                                                                    atgatgcatggagagatgcatcATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGt                       >  1:258588‑M2/23‑91 (MQ=255)

                                                                       atgcatggagagatgcatcATTCTTTTTATTTGATACCTGTTGACTCGTCTCATTCTTTATTTGTCTCTTTGCTGCATCGTTtcatgcacc                    >  2:2535271‑M2/20‑87 (MQ=255)

                                                                       ATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAAc                    <  1:2107497‑M1/91‑1 (MQ=255)

                                                                        TGCATCTCTCAATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACa                   >  2:2054911‑M1/1‑91 (MQ=255)

                                                                         gcatggagagatgcatcATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACAt                  >  1:1381891‑M2/18‑91 (MQ=255)

                                                                          catggagagatgcatcATGCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTACTTGTTTCTTTGCGGCATCGGTTCATGTAacact                 >  2:188583‑M2/17‑89 (MQ=255)

                                                                          CATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACAtt                 >  1:2068851‑M1/1‑91 (MQ=255)

                                                                           ATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACAttt                >  1:791185‑M1/1‑91 (MQ=255)

                                                                           ATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACAttt                >  1:2721869‑M1/1‑91 (MQ=255)

                                                                            tggagagatgcatcATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACATTTa               >  1:888165‑M2/15‑91 (MQ=255)

                                                                            tggagagatgcatcATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACATTTa               >  1:515422‑M2/15‑91 (MQ=255)

                                                                            TCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACATTTa               <  2:2022911‑M1/91‑1 (MQ=255)

                                                                            TCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACATTTa               <  1:918105‑M1/91‑1 (MQ=255)

                                                                            TCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACATTTa               <  2:3846113‑M1/91‑1 (MQ=255)

                                                                             ggagagatgcatcATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACATTTaa              >  2:2603437‑M2/14‑91 (MQ=255)

                                                                             ctctcCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACATTTaa              <  2:1772865/91‑1 (MQ=255)

                                                                                tcCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACATTTAACtt           >  2:33747/1‑91 (MQ=255)

                                                                                      catcATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACATTTAACTTTTCAAt     <  1:110270‑M2/87‑1 (MQ=255)

                                                                                       atcATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACATTTAACTTTTCAATc    >  2:2356118‑M2/4‑91 (MQ=255)

                                                                                         cATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACATTTAACTTTTCAATCtt  <  2:764944‑M2/90‑1 (MQ=255)

                                                                                         cATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACATTTAACTTTTCAATCtt  >  2:3556651‑M2/2‑91 (MQ=255)

AAATTGATATTTTTGCTTTTCATTATCGATAAAAGTACCGCTATCCATTGCACTTTTAATTTCAGTTGCAGATGCATCTCTCCATGCATCATTCTTTTTATTTGATACCTGTTGACTCGTATAATTATTTATTTGTTTCTTTGCTGCATCGTTTAATGTAACATTTAACTTTTCAATCTT  >  USA300TCH1516_ALE/1904387‑1904566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.