BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1967716 =	182 (0.890)	13 (0.070)	6/146	NT	7.3%	intergenic (+48/+76)	traP/USA300HOU_RS09810	Signal transduction protein TRAP/hypothetical protein
*	?	USA300TCH1516_ALE	1967758 =	165 (0.890)	13 (0.070)	6/146	NT	7.3%	intergenic (+90/+34)	traP/USA300HOU_RS09810	Signal transduction protein TRAP/hypothetical protein

Only 100 of 265 total aligned reads displayed.

GATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATCGT  >  USA300TCH1516_ALE/1967668‑1967848

gATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATg                                                                                            <  2:1938053/91‑1 (MQ=255)

gATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATg                                                                                            >  2:2096070/1‑91 (MQ=255)

  ttCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCa                                                                                          <  2:1136071/91‑1 (MQ=255)

  ttCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCa                                                                                          >  1:1571162/1‑91 (MQ=255)

    cGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCAcc                                                                                        >  2:1172854/1‑91 (MQ=255)

         aaaaCTTCCATTGGTTATGCTGCTAACGTATAGATGCTAATGTAATCTGGACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTac                                                                                   <  2:3002637/91‑1 (MQ=255)

          aaaCTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTaca                                                                                  <  1:1219056/91‑1 (MQ=255)

           aaCTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTTATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTacaa                                                                                 <  2:3478210/91‑1 (MQ=255)

           aaCTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTacaa                                                                                 >  2:215335/1‑91 (MQ=255)

            aCTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTacaac                                                                                >  1:1537559/1‑91 (MQ=255)

             cTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTacaaca                                                                               <  2:2250741/91‑1 (MQ=255)

              ttCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAacat                                                                              >  2:1910845/1‑91 (MQ=255)

              ttCCATTGGTTATACTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGCATCACTTGGCGTTCAACATTACATGCACCTTTacaacct                                                                              >  2:106791/1‑89 (MQ=255)

               tCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAacata                                                                             >  1:2237047/1‑91 (MQ=255)

               tCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAacata                                                                             <  1:598349/91‑1 (MQ=255)

                ccATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAacatac                                                                            >  2:2257701/1‑91 (MQ=255)

                 cATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAacataca                                                                           >  2:1595814/1‑91 (MQ=255)

                       ttATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCaa                                                                     >  2:2622132/1‑91 (MQ=255)

                          tGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATgg                                                                  <  2:3891938/91‑1 (MQ=255)

                          tGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATgg                                                                  <  2:3811105/91‑1 (MQ=255)

                           gCTTTTAACGTATAGATGCTAATGTAATCTGAACGCCGGACCAGTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATTGa                                                                 <  2:662949/91‑1 (MQ=255)

                           gCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGa                                                                 <  1:532547/91‑1 (MQ=255)

                           gCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGa                                                                 <  2:2988930/91‑1 (MQ=255)

                           gCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGa                                                                 >  2:1280998/1‑91 (MQ=255)

                             ggTTAACGTATAGATGCTAATGTAATCTGAGCGCCGTATCATTTTGCGTTCAACATTACATTCACCTTGACAAAATACATGCCAATGGAAg                                                               <  2:3853115/90‑1 (MQ=255)

                              gTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGt                                                              <  1:1732570/91‑1 (MQ=255)

                               ttAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGtt                                                             >  2:1904579/1‑91 (MQ=255)

                               ttAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAACGGCAgct                                                             >  2:812518/1‑89 (MQ=255)

                               ttAACGTATAGATGCTAATGTAATCTCAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGtt                                                             >  2:2241249/1‑91 (MQ=255)

                                 aaCGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGtttt                                                           <  1:1572912/91‑1 (MQ=255)

                                    gTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTa                                                        <  1:2162223/91‑1 (MQ=255)

                                     tataGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAg                                                       >  2:3163353/1‑91 (MQ=255)

                                     tataGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAg                                                       >  2:3560223/1‑91 (MQ=255)

                                     tataGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAg                                                       <  2:75161/91‑1 (MQ=255)

                                          aTGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCg                                                  >  2:771234/1‑91 (MQ=255)

                                           tGCGAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGt                                                 <  1:3068365/91‑1 (MQ=255)

                                             cTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTATCGtaa                                               <  2:335217/91‑1 (MQ=255)

                                              tAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGtaat                                              <  2:1385713/91‑1 (MQ=255)

                                               aaTATAATCAGAACGCCGTATCAATTGACGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTGGTCTCGtaata                                             <  2:2353901/91‑1 (MQ=255)

                                                ATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGtaataa                                            <  2:3210070‑M1/91‑1 (MQ=255)

                                                  GTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATg                                          >  1:43390‑M1/1‑91 (MQ=255)

                                                  GTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATg                                          >  1:2009721‑M1/1‑91 (MQ=255)

                                                    AATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGtt                                        >  2:2450603‑M1/1‑91 (MQ=255)

                                                      TCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTc                                      <  1:1129873‑M1/91‑1 (MQ=255)

                                                       gttgaacgccaaatgatacggcgttcagattacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTcc                                     >  2:2843785‑M2/36‑91 (MQ=255)

                                                        ttgaacgccaaatgatacggcgttcagattacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCt                                    >  2:2653130‑M2/35‑91 (MQ=255)

                                                        tGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCt                                    >  2:3244971/1‑91 (MQ=255)

                                                        tGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCt                                    <  1:1941117/91‑1 (MQ=255)

                                                         tgaacgccaaatgatacggcgttcagattacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTg                                   >  1:3548935‑M2/34‑91 (MQ=255)

                                                         gAACGCCGTATCATTTGGCGTTCAACATTACATGCACCCTTACAACATACATGCCAAAGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTg                                   >  2:1811474/1‑91 (MQ=255)

                                                          gaacgccaaatgatacggcgttcagattacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGa                                  >  2:3069996‑M2/33‑91 (MQ=255)

                                                            gccaaatgatacggcgttcagattacattaGCATCTATACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGata                                >  1:2091086‑M2/31‑91 (MQ=255)

                                                            cGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGata                                >  2:895705/1‑91 (MQ=255)

                                                            acgccaaatgatacggcgttcagattacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGata                                >  1:1916701‑M2/31‑91 (MQ=255)

                                                             gccaaatgatacggcgttcaacattacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGatat                               >  1:3495576‑M2/30‑91 (MQ=255)

                                                             gCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGatat                               <  1:991473/91‑1 (MQ=255)

                                                              ccGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATAtt                              >  2:1480845/1‑91 (MQ=255)

                                                              ccGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATAtt                              <  2:2874726/91‑1 (MQ=255)

                                                              ccGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATAtt                              <  2:2659508/91‑1 (MQ=255)

                                                              ccGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATAtt                              <  1:2271634/91‑1 (MQ=255)

                                                              ccGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATAtt                              <  1:2271334/91‑1 (MQ=255)

                                                               cGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATAttt                             <  1:2690254/91‑1 (MQ=255)

                                                                 tATCATTTGGCGTTCAACATTACATGCACCTTTACAACATCCATGCCGATGGAAGTTTTTTAGTCTCCTAATAATGCTTCCTGATATTTCa                           >  2:3670158/1‑91 (MQ=255)

                                                                 tATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCa                           >  2:234333/1‑91 (MQ=255)

                                                                 tATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCa                           <  1:309494/91‑1 (MQ=255)

                                                                  aTCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCaa                          <  1:3716468/91‑1 (MQ=255)

                                                                  aTCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCaa                          >  2:1726075/1‑91 (MQ=255)

                                                                   tCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAAc                         >  2:1024050/1‑91 (MQ=255)

                                                                      tttGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACttt                      >  1:766046/1‑91 (MQ=255)

                                                                      tttGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACttt                      >  1:766739/1‑91 (MQ=255)

                                                                       ttGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACtttt                     <  1:1491693/91‑1 (MQ=255)

                                                                       ttGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACtttt                     <  1:2499381/91‑1 (MQ=255)

                                                                        tGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACttttt                    <  1:2549009/91‑1 (MQ=255)

                                                                         ggCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTta                   <  1:1334828/91‑1 (MQ=255)

                                                                             ttCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTtaataa               >  1:287768/1‑91 (MQ=255)

                                                                             gtCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTtaataa               <  1:2855900/90‑1 (MQ=255)

                                                                              tCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTaataat              <  2:569399/91‑1 (MQ=255)

                                                                              tCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTaataat              <  1:3895203/91‑1 (MQ=255)

                                                                               cAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAataata             >  1:1259159/1‑91 (MQ=255)

                                                                               cAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAataata             >  1:30109/1‑91 (MQ=255)

                                                                                aaCATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATAc            <  1:1511905/91‑1 (MQ=255)

                                                                                aaCATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGGTTCCTGATATTTCAACTTTTTAATAATAc            >  2:179512/1‑91 (MQ=255)

                                                                                 aCATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACt           <  2:1215586/91‑1 (MQ=255)

                                                                                   attacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTc         >  1:3900050‑M2/8‑91 (MQ=255)

                                                                                   attacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTc         >  1:1010236‑M2/8‑91 (MQ=255)

                                                                                   attacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTc         >  2:880943‑M2/8‑91 (MQ=255)

                                                                                   attacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTACTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTc         <  1:3131916‑M2/84‑1 (MQ=255)

                                                                                    ttacatGCACCTTTACAACATACCTGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCt        <  1:3647394‑M2/85‑1 (MQ=255)

                                                                                    ttacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCt        <  1:1869590‑M2/85‑1 (MQ=255)

                                                                                    ttacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCt        >  2:2001376‑M2/7‑91 (MQ=255)

                                                                                    ttacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCt        <  2:147060‑M2/85‑1 (MQ=255)

                                                                                     tacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTa       <  2:3625754‑M2/86‑1 (MQ=255)

                                                                                      acatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTaa      >  2:3753196‑M2/5‑91 (MQ=255)

                                                                                      acatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTaa      >  1:2676352‑M2/5‑91 (MQ=255)

                                                                                       catGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAAt     <  2:426783‑M2/88‑1 (MQ=255)

                                                                                        atGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATc    >  1:2823014‑M2/3‑91 (MQ=255)

                                                                                        atGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATc    <  1:870722‑M2/89‑1 (MQ=255)

                                                                                         tGCACCTTTACAACATACATGCCAATGGAAGTTTTTTCGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATCg   >  1:3331789‑M2/2‑91 (MQ=255)

                                                                                          gCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATCGt  <  1:3301859/91‑1 (MQ=255)

                                                                                          gCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATCGt  >  2:338108/1‑91 (MQ=255)

GATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATCGT  >  USA300TCH1516_ALE/1967668‑1967848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.