BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1970888 =	209 (1.030)	25 (0.140)	13/142	NT	11.6%	intergenic (+77/‑656)	USA300HOU_RS09825/USA300HOU_RS09830	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1970925 =	197 (1.090)	25 (0.140)	13/142	NT	11.6%	intergenic (+114/‑619)	USA300HOU_RS09825/USA300HOU_RS09830	hypothetical protein/hypothetical protein

Only 100 of 300 total aligned reads displayed.

TATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATT  >  USA300TCH1516_ALE/1970835‑1971015

tATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATctct                                                                                            <  2:350474/91‑1 (MQ=255)

tATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATctct                                                                                            <  1:1667042/91‑1 (MQ=255)

   ttttATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCtttt                                                                                         <  1:1403277/91‑1 (MQ=255)

   caatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCtttt                                                                                         >  1:1221008‑M1/51‑91 (MQ=255)

    tttATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCttttt                                                                                        >  1:3357303/1‑91 (MQ=255)

    tttATTAATAACAGCATATTTATTTTTTAAAATTAAATGCAAAATAACCGAGATGACATTAGAAATGCGATATTTCTTGTCATCTCttttt                                                                                        >  2:3676952/1‑91 (MQ=255)

      tattaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTa                                                                                      >  2:315949/1‑91 (MQ=255)

      tattaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTa                                                                                      >  2:581242/1‑91 (MQ=255)

       attaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTaa                                                                                     <  2:3170868/91‑1 (MQ=255)

        ttaGTAACAGCGTATTTATTTTTGAAAATTAAATGCCAAATAAACGAGATGACATTAGAGATTAGATATTTCTTGTCATCTCTTTTTTaaa                                                                                    <  2:3019090/91‑1 (MQ=255)

        ttaGTAACAGCATATTTATTTTTTATATTTTTATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTata                                                                                    >  2:2218838/1‑89 (MQ=255)

        ttaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTaaa                                                                                    >  1:3220739/1‑91 (MQ=255)

        ttaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTaaa                                                                                    <  2:2789726/91‑1 (MQ=255)

         taGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTaaaa                                                                                   <  2:200777/91‑1 (MQ=255)

           gTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACt                                                                                 <  2:3274092/91‑1 (MQ=255)

           gTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACt                                                                                 <  2:1722315/91‑1 (MQ=255)

           gTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACt                                                                                 >  1:3903980/1‑91 (MQ=255)

           gTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACt                                                                                 >  2:852453/1‑91 (MQ=255)

            tAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTc                                                                                >  1:597986/1‑91 (MQ=255)

            tAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTc                                                                                >  1:598196/1‑91 (MQ=255)

              aCAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCaa                                                                              >  1:1754432/1‑91 (MQ=255)

              aCAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCaa                                                                              <  1:1692570/91‑1 (MQ=255)

               cAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCaaa                                                                             <  2:798177/91‑1 (MQ=255)

                aGCATATTTCTTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAAt                                                                            <  1:3783482/91‑1 (MQ=255)

                 gCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATg                                                                           >  1:2189449/1‑91 (MQ=255)

                 gCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTCGTCATCTCTTTTTTAAAACTCAAATg                                                                           <  2:2236492/91‑1 (MQ=255)

                   atatTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGaa                                                                         <  1:2650264/91‑1 (MQ=255)

                    tatttattTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTTAAATGAAc                                                                        >  2:3165292/1‑91 (MQ=255)

                     atttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACt                                                                       >  2:2174112/1‑91 (MQ=255)

                     atttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACt                                                                       >  1:3025630/1‑91 (MQ=255)

                     atttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACt                                                                       >  1:3109602/1‑91 (MQ=255)

                      tttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACtt                                                                      >  1:1868502/1‑91 (MQ=255)

                        tatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTAt                                                                    <  2:3110048/91‑1 (MQ=255)

                        tatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTAt                                                                    >  2:627990/1‑91 (MQ=255)

                         atttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATg                                                                   >  1:96772/1‑91 (MQ=255)

                          ttttttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGt                                                                  >  1:3615461/1‑91 (MQ=255)

                             tttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTa                                                               <  2:3079720/91‑1 (MQ=255)

                              ttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTAc                                                              >  1:3874791/1‑91 (MQ=255)

                                aaaaTTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACaa                                                            <  2:674063/91‑1 (MQ=255)

                                 aaaTTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACaaa                                                           >  2:397905/1‑91 (MQ=255)

                                 aaaTTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACaaa                                                           >  1:3771674/1‑91 (MQ=255)

                                      aaaTGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATtata                                                      >  1:1596930/1‑91 (MQ=255)

                                      aaaTGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATtata                                                      >  2:1225786/1‑91 (MQ=255)

                                      aaaTGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTCTTTAAAACTCAAATGAACTTATGTTTACAAATtata                                                      >  2:3567402/1‑91 (MQ=255)

                                       aaTGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAg                                                     >  2:2622592/1‑91 (MQ=255)

                                        aTGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAgg                                                    >  2:1794239/1‑91 (MQ=255)

                                         tGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGa                                                   <  2:2662698/91‑1 (MQ=255)

                                          gCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGaa                                                  >  2:3751664/1‑91 (MQ=255)

                                           ccAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAg                                                 <  1:1515124/91‑1 (MQ=255)

                                            cAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGa                                                <  1:3537398/91‑1 (MQ=255)

                                            cAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGa                                                <  1:1113440/91‑1 (MQ=255)

                                             aaaTAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGAc                                               >  2:932976/1‑91 (MQ=255)

                                              aaTAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACa                                              <  1:1328239/91‑1 (MQ=255)

                                               aTAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAt                                             <  1:1065938/91‑1 (MQ=255)

                                                tAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAtt                                            >  1:2904813/1‑91 (MQ=255)

                                                  aaCGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgt                                          >  1:1721119/1‑91 (MQ=255)

                                                  aaCGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgt                                          >  1:1929421/1‑91 (MQ=255)

                                                   aCGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgtt                                         <  1:1498909/91‑1 (MQ=255)

                                                   aCGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgtt                                         <  2:2580371/91‑1 (MQ=255)

                                                    agagatgacaagaaatatccaatttccaatgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgttt                                        >  2:2235580‑M2/39‑91 (MQ=255)

                                                     gagatgacaagaaatatctaatttctaatgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgtttg                                       >  1:2430123‑M2/38‑91 (MQ=255)

                                                       gatgacaagaaatatctaatttctaatgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTa                                     >  1:3005284‑M2/36‑91 (MQ=255)

                                                        ATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAg                                    >  2:292622‑M1/1‑91 (MQ=255)

                                                        ATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAg                                    >  2:2991691‑M1/1‑91 (MQ=255)

                                                         tgacaagaaatatctaatttctaatgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGt                                   >  2:1582701‑M2/34‑91 (MQ=255)

                                                         TGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGt                                   >  2:2872152‑M1/1‑91 (MQ=255)

                                                          gacaagaaatatctaatttctaatgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTg                                  >  1:747064‑M2/33‑91 (MQ=255)

                                                          GACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTg                                  >  2:727293‑M1/1‑91 (MQ=255)

                                                           acaagaaatatctaatttctaatgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGa                                 >  2:2364279‑M2/32‑91 (MQ=255)

                                                           acaagaaatatctaatttctaatgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGa                                 >  2:2756697‑M2/32‑91 (MQ=255)

                                                           ACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGa                                 >  2:2729447‑M1/1‑91 (MQ=255)

                                                           ACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGa                                 >  2:1452167‑M1/1‑91 (MQ=255)

                                                           ACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGa                                 <  1:2361232‑M1/91‑1 (MQ=255)

                                                            CATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAt                                <  2:1256507‑M1/91‑1 (MQ=255)

                                                            CATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAt                                <  2:36205‑M1/91‑1 (MQ=255)

                                                            CATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAt                                >  1:856684‑M1/1‑91 (MQ=255)

                                                             aagaaatatctaatttctaatgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAtt                               >  1:2486369‑M2/30‑91 (MQ=255)

                                                              ttAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAttt                              <  1:1797868/91‑1 (MQ=255)

                                                              ttAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAttt                              <  2:1734513/91‑1 (MQ=255)

                                                              ttAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAttt                              <  2:3420286/91‑1 (MQ=255)

                                                              ttAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAttt                              <  1:777110/91‑1 (MQ=255)

                                                                  aaatatctaatttcttgtcatctcTTTTTTAAAACTCAAATGACCTTATGTTTACAACTTATAGGAAGACATTGTTTGTATTGATTTTCGc                          >  2:2409584‑M2/25‑91 (MQ=255)

                                                                  aaaTTAGATATTTCTTGTCATCTCTTTTTTAACACTCAAATGAACTTATGTCTACAAATTATAGGGAGACATTGTTTGTAGTGATTTTCGc                          >  2:2194336/1‑91 (MQ=255)

                                                                  aaaTTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGc                          >  2:2894378/1‑91 (MQ=255)

                                                                  aaaTTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGc                          >  1:210967/1‑91 (MQ=255)

                                                                  aaaTTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGc                          <  1:2576709/91‑1 (MQ=255)

                                                                   aaTTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCt                         <  2:1660803/91‑1 (MQ=255)

                                                                   aaTTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCt                         >  2:1321500/1‑91 (MQ=255)

                                                                   aaTTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCt                         >  1:3400829/1‑91 (MQ=255)

                                                                       aGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTaaa                     >  2:1082554/1‑91 (MQ=255)

                                                                       aGATATTTCTTGTCATCACTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTaaa                     <  1:3382243/91‑1 (MQ=255)

                                                                        gATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAAt                    <  1:3656477/91‑1 (MQ=255)

                                                                            tttCTTGTCATCTCGTTTTTAAAACTCAAATGAACGTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCata                <  2:2640063/91‑1 (MQ=255)

                                                                                 tgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTAt           <  1:1709935‑M2/82‑1 (MQ=255)

                                                                                   tcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGa         <  1:275860‑M2/84‑1 (MQ=255)

                                                                                    catctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGaa        >  2:2119187‑M2/7‑91 (MQ=255)

                                                                                     ttctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAAt       <  2:3929781‑M2/86‑1 (MQ=255)

                                                                                      tctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAAtt      <  2:1115921‑M2/87‑1 (MQ=255)

                                                                                      tctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAAtt      >  2:1904773‑M2/5‑91 (MQ=255)

                                                                                      tctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAAtt      >  1:568783‑M2/5‑91 (MQ=255)

TATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATT  >  USA300TCH1516_ALE/1970835‑1971015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.