| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1980876 | 169 (0.830) | 17 (0.100) | 6/140 | NT | 10.0% | intergenic (‑118/+61) | USA300HOU_RS09865/USA300HOU_RS09870 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1980902 | 158 (0.890) | intergenic (‑144/+35) | USA300HOU_RS09865/USA300HOU_RS09870 | hypothetical protein/hypothetical protein | |||||
Only 100 of 275 total aligned reads displayed.
TTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTC > USA300TCH1516_ALE/1980812‑1980992 | ttttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTa < 2:1500280/91‑1 (MQ=255)ttttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTa < 1:562688/91‑1 (MQ=255)ttttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTa < 1:2380633/91‑1 (MQ=255) atgctaaagaagaattagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACa > 2:2226300‑M1/54‑91 (MQ=255) atgccaaagaagaattagtaagtatctaggcctatatacttttaacaagtgatAAATGCGATGCCTCACCTCTCGAAACAGGTGTGTTACa > 2:753777‑M1/54‑91 (MQ=255) aaTTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatc < 2:1908009‑M2/91‑5 (MQ=255) aTTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcg > 2:15607‑M2/1‑86 (MQ=255) ttCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgc > 1:2532164‑M2/1‑85 (MQ=255) taaagaagaattagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGc > 2:1170402‑M1/50‑91 (MQ=255) taaagaagaattagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGc > 2:2154332‑M1/50‑91 (MQ=255) tCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgct > 1:751901‑M2/1‑84 (MQ=255) tCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgct > 1:2870606‑M2/1‑84 (MQ=255) tCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgcc < 2:3583522‑M2/91‑8 (MQ=255) cATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctt > 1:2310945‑M2/1‑83 (MQ=255) cATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctt < 2:1393139‑M2/91‑9 (MQ=255) aTTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgcttt < 1:1217713‑M2/91‑10 (MQ=255) aTTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgcttt < 2:1434698‑M2/91‑10 (MQ=255) ttAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctttt > 1:2753482‑M2/1‑81 (MQ=255) aaTCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttat < 1:680091/91‑1 (MQ=255) tCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttatta < 2:3151073/91‑1 (MQ=255) tCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttatta < 2:2058567/91‑1 (MQ=255) cATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattat < 1:3599315/91‑1 (MQ=255) aTTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatt > 2:1242130/1‑91 (MQ=255) tttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattattt < 1:629604/91‑1 (MQ=255) tttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattattt < 1:3910154/91‑1 (MQ=255) aCTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatttatta > 2:666418/1‑91 (MQ=255) aCTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatttatta > 1:3771103/1‑91 (MQ=255) aCTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatttatta > 2:2783217/1‑91 (MQ=255) ttCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTaaaa < 1:3702979/91‑1 (MQ=255) tCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAg < 1:85706/91‑1 (MQ=255) cTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGt > 2:2106214/1‑91 (MQ=255) tGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGta < 2:65721/91‑1 (MQ=255) cAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatata < 2:3166742/91‑1 (MQ=255) cAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatata < 2:1689708/91‑1 (MQ=255) aaTTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAg > 1:2591500/1‑91 (MQ=255) aaTTTATTACTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAg > 1:1970580/1‑91 (MQ=255) tttATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGc < 1:3532469/91‑1 (MQ=255) tttATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGc > 1:278058/1‑91 (MQ=255) tttATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGc < 2:3710743/91‑1 (MQ=255) tattattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCt < 1:1628014/91‑1 (MQ=255) attattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTa < 2:1137483/91‑1 (MQ=255) ttattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAg > 1:1699328/1‑91 (MQ=255) ttattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAg > 2:960246/1‑91 (MQ=255) attaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGat > 2:3099758/1‑91 (MQ=255) aGTTTACATACCAAAAGCGATGCCTCACCTCTCGACACAGGTGTGCTACATCGCTATTATTCTTTATTAAAAGTATATAGGCCTAGATATg > 2:1733941/1‑91 (MQ=255) gTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGt > 2:3379305/1‑91 (MQ=255) gTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGt > 2:399248/1‑91 (MQ=255) tttACATACAACACGCGATGCCTCAGCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTa < 2:1630401/91‑1 (MQ=255) tttACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTa > 2:1925471/1‑91 (MQ=255) tttACATACAAAAAGCGATGCCACACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTa < 2:276665/91‑1 (MQ=255) tacatacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACt > 1:934123/1‑91 (MQ=255) catacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTaa < 2:1905675/91‑1 (MQ=255) acaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAttc > 1:3355845/1‑91 (MQ=255) acaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAttc < 2:688594/91‑1 (MQ=255) AAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAttcttc > 2:2876898‑M1/1‑91 (MQ=255) AAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATtcttct > 2:1670127‑M1/1‑91 (MQ=255) AGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCttt > 1:1548647‑M1/1‑91 (MQ=255) GCGATGCCTCCCCTCTCGAAACAGGTGTGTTACATCGCTCTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTa < 2:260896‑M1/91‑1 (MQ=255) GCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTa < 2:2573101‑M1/91‑1 (MQ=255) cGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctttttgtatgtaaactaataataaattgagcagaaagtgaaatgattaatgaat < 1:2769218‑M2/91‑61 (MQ=255) gATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctttttgtatgtaaactaataataaattgagcagaaagtgaaatgattaatgaatt < 1:373157‑M2/91‑62 (MQ=255) GATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc < 1:979935‑M1/91‑1 (MQ=255) GATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc > 1:2169459‑M1/1‑91 (MQ=255) aTGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctttttgtatgtaaactaataataaattgagcagaaagtgaaatgattaatgaatta < 1:492328‑M2/91‑63 (MQ=255) tGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctttttgtatgtaaactaataataaattgagcagaaagtgaaatgattaatgaattaa < 2:882696‑M2/91‑64 (MQ=255) tGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctttttgtatgtaaactaataataaattgagcagaaagtgaaatgattaatgaattaa < 1:1293651‑M2/91‑64 (MQ=255) TGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAt < 2:3420129‑M1/91‑1 (MQ=255) TGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAt < 1:1960917‑M1/91‑1 (MQ=255) TGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAt < 1:1037569‑M1/91‑1 (MQ=255) GCCTCACCTCTCGAAATAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAtt > 2:3788500‑M1/1‑91 (MQ=255) ccTCACCTCTCGAAACAGGTGTGTTAcatcgctttttgtatgtaaactaataataaattgagtagaaagtgaaatgattaatgaattaaaa < 1:2284159‑M2/91‑66 (MQ=255) ccTCACCTCTCGAAACAGGTGTGTTAcatcgctttttgtatgtaaactaataataaattgagcagaaagtgaaatgattaatgaattaaaa < 1:3186528‑M2/91‑66 (MQ=255) ccTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAttt > 1:3708123/1‑91 (MQ=255) ccTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAttt > 2:1996414/1‑91 (MQ=255) aCCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGt > 1:1128815/1‑91 (MQ=255) aCCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGt > 1:3817865/1‑91 (MQ=255) ctctCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTa > 2:881022/1‑91 (MQ=255) ctctCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTa > 2:1804368/1‑91 (MQ=255) ctctCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTa > 2:811860/1‑91 (MQ=255) tctcGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTACTTCTTCTTTAGCATTTCTGTTaa > 1:300052/1‑91 (MQ=255) tctcGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTaa < 2:2299678/91‑1 (MQ=255) ctcGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTaaa > 1:3381664/1‑91 (MQ=255) ctcGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTaaa < 1:1790039/91‑1 (MQ=255) ctcGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTaaa < 2:3865396/91‑1 (MQ=255) cGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGt > 1:1772413/1‑91 (MQ=255) gAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTa < 2:1069659/91‑1 (MQ=255) aaaCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTAt > 1:1879390/1‑91 (MQ=255) aaCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATg < 2:3276975/91‑1 (MQ=255) aCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGt < 1:1382/91‑1 (MQ=255) aCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGt < 1:1740349/91‑1 (MQ=255) cAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGtt < 1:706254/91‑1 (MQ=255) cAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGtt > 2:2410847/1‑91 (MQ=255) aGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCGTTTCTGTTAAAGTATGttt > 1:2056822/1‑91 (MQ=255) aGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGttt > 2:884985/1‑91 (MQ=255) ggTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGCATGTTTc > 1:990920/1‑91 (MQ=255) gtgtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGc > 1:2257093/1‑91 (MQ=255) gtgtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGc > 1:462794/1‑91 (MQ=255) gtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCtt < 1:3227900/91‑1 (MQ=255) gtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCtc > 2:3317501/1‑90 (MQ=255) aCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctc < 1:2499457/91‑1 (MQ=255) | TTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTC > USA300TCH1516_ALE/1980812‑1980992 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |