New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2090954191 (0.940)15 (0.080) 6/142 NT 8.0% intergenic (‑188/+350) USA300HOU_RS10575/USA300HOU_RS10590 hypothetical protein/hypothetical protein
?USA300TCH1516_ALE = 2090971 177 (0.980)intergenic (‑205/+333) USA300HOU_RS10575/USA300HOU_RS10590 hypothetical protein/hypothetical protein

Only 100 of 264 total aligned reads displayed.

TACCCTAATGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTACTA  >  USA300TCH1516_ALE/2090881‑2091062
                                                                                          |                                                                                           
tACCCTAATGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAg                                                                                             <  2:679796/91‑1 (MQ=255)
 aCCCTAATGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGc                                                                                            <  1:1095246‑M2/91‑2 (MQ=255)
 aCCCTAATGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGc                                                                                            <  1:1152935‑M2/91‑2 (MQ=255)
  cccTAATGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcg                                                                                           >  2:435090‑M2/1‑89 (MQ=255)
   ccTAATGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcga                                                                                          >  1:2319138‑M2/1‑88 (MQ=255)
   ccTAATGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcga                                                                                          >  1:2851162‑M2/1‑88 (MQ=255)
    cTAATGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcgat                                                                                         >  2:839204‑M2/1‑87 (MQ=255)
    cTAATGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcgat                                                                                         >  1:3921842‑M2/1‑87 (MQ=255)
     tAATGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcgatg                                                                                        <  2:998368‑M2/91‑6 (MQ=255)
      aaTGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAGACCAGCCAAAGTTAGcgatgg                                                                                       >  1:1312977‑M2/1‑85 (MQ=255)
      aaTGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcgatgg                                                                                       >  1:866816‑M2/1‑85 (MQ=255)
       aTGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcgatggt                                                                                      >  2:3539516‑M2/1‑84 (MQ=255)
        tGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcgatggtt                                                                                     <  2:154271‑M2/91‑9 (MQ=255)
        tGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcgatggtt                                                                                     <  1:2926431‑M2/91‑9 (MQ=255)
        tGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcgatggtt                                                                                     >  1:770383‑M2/1‑83 (MQ=255)
         gAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcgatggtta                                                                                    >  1:2511525‑M2/1‑82 (MQ=255)
         gAGCCCGTGAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcgatggtta                                                                                    >  2:1207054‑M2/1‑82 (MQ=255)
          aGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAt                                                                                   <  1:2598075/91‑1 (MQ=255)
            cccGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAttt                                                                                 <  1:844717/91‑1 (MQ=255)
             ccGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAtttt                                                                                <  2:2205457/91‑1 (MQ=255)
              cGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAttttt                                                                               >  1:638131/1‑91 (MQ=255)
              cGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAttttt                                                                               <  1:779782/91‑1 (MQ=255)
                 tAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAAGCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTAt                                                                            <  1:3944971/91‑1 (MQ=255)
                 tAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTAt                                                                            <  2:3773489/91‑1 (MQ=255)
                  aaaaaGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTAtt                                                                           >  2:170058/1‑91 (MQ=255)
                  aaaaaGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTAtt                                                                           >  1:885562/1‑91 (MQ=255)
                  aaaaaGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTAtt                                                                           >  2:30607/1‑91 (MQ=255)
                  aaaaaGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTAtt                                                                           <  2:3445069/91‑1 (MQ=255)
                    aaaGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGc                                                                         >  1:1037986/1‑91 (MQ=255)
                    aaaGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGc                                                                         <  2:1617980/91‑1 (MQ=255)
                     aaGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCt                                                                        <  2:2844412/91‑1 (MQ=255)
                     aaGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCt                                                                        >  1:2567094/1‑91 (MQ=255)
                      aGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCtt                                                                       <  2:2598600/91‑1 (MQ=255)
                         cGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAAt                                                                    >  2:1997819/1‑91 (MQ=255)
                           gTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTc                                                                  <  2:2992440/91‑1 (MQ=255)
                            tGGCTATTTTAGATTAAAGATTAAATTAATAAGCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTGTTATTGCTTAATTCa                                                                 <  1:3375911/91‑1 (MQ=255)
                            tGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCa                                                                 >  1:3098153/1‑91 (MQ=255)
                              gCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAAt                                                               <  2:535392/91‑1 (MQ=255)
                               cTATTTTAGAGTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATa                                                              <  2:1003485/91‑1 (MQ=255)
                                 aTTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAg                                                            <  1:2206929/91‑1 (MQ=255)
                                 aTTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAg                                                            >  1:1579906/1‑91 (MQ=255)
                                 aTTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAg                                                            <  2:3659090/91‑1 (MQ=255)
                                   tttAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCt                                                          >  1:2080142/1‑91 (MQ=255)
                                   tttAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCt                                                          <  1:893176/91‑1 (MQ=255)
                                   tttAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCCTAATTCAATAAGCt                                                          <  1:803935/91‑1 (MQ=255)
                                    ttAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCtt                                                         >  1:1998666/1‑91 (MQ=255)
                                    ttAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCtt                                                         >  2:3618687/1‑91 (MQ=255)
                                    ttAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGCTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCtt                                                         >  1:930700/1‑91 (MQ=255)
                                      agattaaagattaaATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGa                                                       <  2:2391126/91‑1 (MQ=255)
                                        attaaagattaaaTTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGAtt                                                     <  2:1630836/91‑1 (MQ=255)
                                         ttaaagattaaaTTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTa                                                    >  1:3871603/1‑91 (MQ=255)
                                          taaagattaaaTTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTAc                                                   <  2:1023821/91‑1 (MQ=255)
                                            aagattaaaTTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATCGCTTAATTCAATAAGCTTGATTACTa                                                 <  2:2245874/91‑1 (MQ=255)
                                              gattaaaTTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGa                                               >  2:1259675/1‑91 (MQ=255)
                                               attaaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGAc                                              <  2:943608/91‑1 (MQ=255)
                                               attaaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGAc                                              <  1:1389169/91‑1 (MQ=255)
                                               attaaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGAc                                              <  1:3460189/91‑1 (MQ=255)
                                               attaaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGAc                                              <  1:1584629/91‑1 (MQ=255)
                                                ttaaattaaTAACCATTTAACCATCGAAAGCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGAcc                                             <  1:3175443/91‑1 (MQ=255)
                                                  aaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTTCTTAATTCAATAAGCTTGATTACTAGATCtt                                           >  2:2783446/1‑90 (MQ=255)
                                                  aaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTa                                           <  1:504614/91‑1 (MQ=255)
                                                    attaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATc                                         <  1:2586401/91‑1 (MQ=255)
                                                      taataaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCaa                                       <  1:2430042/91‑1 (MQ=255)
                                                      taataaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCaa                                       <  1:2492143/91‑1 (MQ=255)
                                                       aataaCCATTTAACCATCGAAACCAGCCGAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAAt                                      <  2:1791241/91‑1 (MQ=255)
                                                       aataaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAAt                                      >  1:22704/1‑91 (MQ=255)
                                                       aataaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAAt                                      >  2:2339337/1‑91 (MQ=255)
                                                       aataaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAAt                                      >  2:3849756/1‑91 (MQ=255)
                                                       aataaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAAt                                      <  2:3801986/91‑1 (MQ=255)
                                                         taaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGc                                    >  1:3894404/1‑91 (MQ=255)
                                                          aaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCATTAAGCTTGATTACTAGACCTATCAATGCa                                   >  1:3171737/1‑91 (MQ=255)
                                                          aaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCa                                   >  2:1863066/1‑91 (MQ=255)
                                                            ccATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAAt                                 <  1:403377/91‑1 (MQ=255)
                                                            ccATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAAt                                 >  2:594848/1‑91 (MQ=255)
                                                             cATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATa                                <  1:102195/91‑1 (MQ=255)
                                                             cATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATa                                >  2:2722849/1‑91 (MQ=255)
                                                                     cATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATaa                        >  1:3246248/1‑91 (MQ=255)
                                                                      aTCGAAACCAGCCAAAGTTAGcgatggttaaatggttattaatttaatctttaatctaaaatagccaccgtctttttaacgggctcattag                       <  1:218149‑M2/91‑71 (MQ=255)
                                                                      aTCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATaaa                       >  1:3762630/1‑91 (MQ=255)
                                                                      aTCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATaaa                       >  1:3197807/1‑91 (MQ=255)
                                                                       tCGAAACCAGCCAAAGTTAGcgatggttaaatggttattaatttaatctttaatctaaaatagccaccgtctttttaacgggctcattagg                      <  2:3332350‑M2/91‑72 (MQ=255)
                                                                        cGAAACCAGCCAAAGTTAGcgatggttaaatggttattaatttaatctttaatctaaaatagccaccgtctttttaacgggctcattaggg                     <  1:2802056‑M2/91‑73 (MQ=255)
                                                                         gAAACCAGCCAAAGTTAGcgatggttaaatggttattaatttaatctttaatctaaaatagccaccgtctttttaacgggctcattagggt                    <  2:1494802‑M2/91‑74 (MQ=255)
                                                                            aCCAGCCAAAGTTAGcgatggttaaatggttattaatttaatctttaatctaaaatagccaccgtctttttaacgggctcattagggtaac                 <  2:1523782‑M2/91‑77 (MQ=255)
                                                                            aCCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAAGTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAGCCAAAc                 <  2:11564/91‑1 (MQ=255)
                                                                             ccAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACt                >  2:726155/1‑91 (MQ=255)
                                                                             ccAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACt                >  1:3668347/1‑91 (MQ=255)
                                                                             ccAGCCAAAGTTAGCGATGGTTATTTTATATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACt                <  2:1340171/91‑1 (MQ=255)
                                                                              cAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTg               >  1:1922157/1‑91 (MQ=255)
                                                                              cAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTg               >  1:2335421/1‑91 (MQ=255)
                                                                                gCCAAAGTTAGCGATAGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACATATCAATGCAATAAGGAATAAACCAAACTGCa             >  1:3366820/1‑91 (MQ=255)
                                                                                   aaaGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACa          >  1:1287182/1‑91 (MQ=255)
                                                                                    aaGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACAt         <  2:2691169/91‑1 (MQ=255)
                                                                                    aaGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACAt         <  2:2952190/91‑1 (MQ=255)
                                                                                        tAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTa     <  2:3956036/91‑1 (MQ=255)
                                                                                         aGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTAc    <  2:3163563/91‑1 (MQ=255)
                                                                                          gCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTACt   >  1:2695953/1‑91 (MQ=255)
                                                                                          gCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTACt   <  1:728890/91‑1 (MQ=255)
                                                                                          gCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTACt   <  1:842655/91‑1 (MQ=255)
                                                                                          gCGATGGTTA‑TTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTACTa  <  1:1555308/91‑1 (MQ=255)
                                                                                          |                                                                                           
TACCCTAATGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTACTA  >  USA300TCH1516_ALE/2090881‑2091062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.