BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2150647 =	177 (0.870)	19 (0.110)	11/136	NT	10.9%	intergenic (+310/+57)	agrA/scrK	Accessory gene regulator A/Fructokinase
*	?	USA300TCH1516_ALE	2150691 =	161 (0.930)	19 (0.110)	11/136	NT	10.9%	intergenic (+354/+13)	agrA/scrK	Accessory gene regulator A/Fructokinase

Only 100 of 284 total aligned reads displayed.

ATAAAATGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTGCAGCAAC  >  USA300TCH1516_ALE/2150601‑2150781

   acattacaagaggttgaacaagcattttaaataattcatttaaAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATaa                                                                                         >  1:3308740‑M1/44‑91 (MQ=255)

    aaTGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATaaa                                                                                        <  1:1000493/91‑1 (MQ=255)

     aTGCTATAATTTCCCACTCCGTGAATCTTATTTTGTTTTATAACACAGTGTAGCCCAAGATTCAACTTGTTTCCTACACTGTTTTATaaaa                                                                                       >  2:3410176/1‑90 (MQ=255)

      tGCTGTAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATg                                                                                      >  1:3125814/1‑91 (MQ=255)

      tGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATg                                                                                      >  1:141414/1‑91 (MQ=255)

        cTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGaa                                                                                    <  2:1466536/91‑1 (MQ=255)

        cTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGaa                                                                                    >  1:258384/1‑91 (MQ=255)

            aaTTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAactat                                                                                >  1:3193622/1‑91 (MQ=255)

             aggttgaacaagcattttaaataattcatttatAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAattatt                                                                               >  1:1992303‑M1/34‑91 (MQ=255)

              tttCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTAttt                                                                              <  2:1614501/91‑1 (MQ=255)

              tttCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTAttt                                                                              <  1:2562052/91‑1 (MQ=255)

              tttCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTAttt                                                                              <  2:59098/91‑1 (MQ=255)

              tttCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTAttt                                                                              <  1:529502/91‑1 (MQ=255)

              tttCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTAttt                                                                              <  2:2408083/91‑1 (MQ=255)

              tttCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTAttt                                                                              >  2:2781176/1‑91 (MQ=255)

              tttCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTAttt                                                                              <  2:1242834/91‑1 (MQ=255)

                  cTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTaaaa                                                                          <  2:2341348/91‑1 (MQ=255)

                   tACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAAt                                                                         >  1:458936/1‑91 (MQ=255)

                    aCTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATg                                                                        >  1:2699238/1‑91 (MQ=255)

                     cTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGc                                                                       >  2:2378215/1‑91 (MQ=255)

                     cTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGc                                                                       <  2:2174364/91‑1 (MQ=255)

                       ccGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAGAATGCtt                                                                     >  1:1970652/1‑91 (MQ=255)

                       ccGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCtt                                                                     <  1:2496153/91‑1 (MQ=255)

                       ccGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCtt                                                                     <  2:2234153/91‑1 (MQ=255)

                       ccGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCtt                                                                     <  2:557071/91‑1 (MQ=255)

                           gAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTc                                                                 <  2:1374799/91‑1 (MQ=255)

                           gAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTAAAAATGCTTGTTc                                                                 >  1:2194503/1‑91 (MQ=255)

                            aaTCTTATTTTGTTTTAAAAGACAGGGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTGAAAATGCTTGTTCa                                                                <  2:2195165/91‑1 (MQ=255)

                              tCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAAc                                                              >  2:1342345/1‑91 (MQ=255)

                              tCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAAc                                                              <  2:1973822/91‑1 (MQ=255)

                               cTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAAcc                                                             <  2:1001941/91‑1 (MQ=255)

                                aataattcatttataaaacagtgtaggaaacaagttgaatcttgtgctacactgttttTTAAATGAATTATTTAAAATGCTTGTTCAACct                                                            >  2:2959752‑M2/59‑91 (MQ=255)

                                 tATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctc                                                           <  2:18006/91‑1 (MQ=255)

                                  aTTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctct                                                          <  2:2095120/91‑1 (MQ=255)

                                  aTTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctct                                                          >  2:1048662/1‑91 (MQ=255)

                                  aTTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctct                                                          <  2:2055832/91‑1 (MQ=255)

                                  aTTTTGTTCTAAAAAACAGTGTAGCACAAGATACAACTTGTTTCCTACCCTGTTTTATAAATGAATTATTTAAAATGCATGTTCAACctct                                                          >  2:1105729/1‑91 (MQ=255)

                                   ttttGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCtt                                                         <  1:3090873/91‑1 (MQ=255)

                                   ttttGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCtt                                                         <  2:2914133/91‑1 (MQ=255)

                                     ttGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGt                                                       >  1:1346101/1‑91 (MQ=255)

                                         tttAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATg                                                   <  1:773270/91‑1 (MQ=255)

                                         tttAAAAAACAGCGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATg                                                   >  1:3055550/1‑91 (MQ=255)

                                           tAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGtt                                                 <  1:2233694/91‑1 (MQ=255)

                                           tAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGtt                                                 >  1:427685/1‑91 (MQ=255)

                                            aaaaaaCAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTg                                                <  2:491171/91‑1 (MQ=255)

                                             aaaaaCAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTgg                                               >  2:3569501/1‑91 (MQ=255)

                                             aaaaaCAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTgg                                               <  1:1583748/91‑1 (MQ=255)

                                                taCATTGTAGCACAAGATTCAACTTGATTCCTTCACGGTTTTATAAATGATTTATTTAAAATGCTTGTTTAACCTCTTGTAATGTTGGCag                                            <  2:3915815/90‑2 (MQ=255)

                                                AACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCaa                                            <  1:1861663‑M1/91‑1 (MQ=255)

                                                 acagtgtaggaaacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAATATGCTTGTTCAACCTCTTGTAATGTTGGCaaa                                           >  1:3357110‑M2/42‑91 (MQ=255)

                                                 acagtgtaggaaacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCaaa                                           >  2:1695689‑M2/42‑91 (MQ=255)

                                                 ACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAAtgttggtaaa                                           >  1:3392925‑M1/1‑87 (MQ=255)

                                                 ACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCaaa                                           <  1:865792‑M1/91‑1 (MQ=255)

                                                   AGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACt                                         <  1:611238‑M1/91‑1 (MQ=255)

                                                    gtgtaggaaacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTa                                        >  1:12690‑M2/39‑91 (MQ=255)

                                                    GTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTCTTTAAACTGCTTGTTCACCCTCTTGTCATGATGTCAAActt                                        <  2:3741363‑M1/91‑2 (MQ=255)

                                                    GTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTa                                        >  1:1800669‑M1/1‑91 (MQ=255)

                                                    GTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTa                                        >  1:1488903‑M1/1‑91 (MQ=255)

                                                     TGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTAt                                       >  1:545803‑M1/1‑91 (MQ=255)

                                                     TGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTAt                                       >  1:49303‑M1/1‑91 (MQ=255)

                                                     TGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTAt                                       <  1:3021798‑M1/91‑1 (MQ=255)

                                                     TGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTAt                                       >  1:2283586‑M1/1‑91 (MQ=255)

                                                     TGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTAt                                       >  2:805353‑M1/1‑91 (MQ=255)

                                                     TGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTAt                                       >  1:1099887‑M1/1‑91 (MQ=255)

                                                      GTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTAtt                                      <  2:855854‑M1/91‑1 (MQ=255)

                                                         ggaaacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAAt                                   >  1:1767592‑M2/34‑91 (MQ=255)

                                                         GCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAAt                                   <  1:1793851‑M1/91‑1 (MQ=255)

                                                          cacaAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATa                                  <  1:2815550/91‑1 (MQ=255)

                                                           aaacaagttgaatcttgtgctacactgttttATAAATCAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAg                                 >  1:3332435‑M2/32‑91 (MQ=255)

                                                              aGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTAGTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCAc                              >  2:1641291/1‑91 (MQ=255)

                                                                aTTCAACTTGTTTCCTGCACTGTTTTATAAATGAATTATTTAAAATGCTTGTGCCGCCTCTTGTAATGTTGGCGAACTATTAATAGCGCCa                            <  2:2635367/91‑1 (MQ=255)

                                                                aTTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCa                            <  1:232249/91‑1 (MQ=255)

                                                                aTTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCa                            <  2:1511086/91‑1 (MQ=255)

                                                                aTTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCa                            <  2:2270403/91‑1 (MQ=255)

                                                                  tCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATa                          <  1:1675256/91‑1 (MQ=255)

                                                                   cAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCATCATAc                         >  2:3635382/1‑91 (MQ=255)

                                                                   cAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATAc                         <  2:2684299/91‑1 (MQ=255)

                                                                   cAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATAc                         >  1:2033866/1‑91 (MQ=255)

                                                                   cAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATAc                         >  1:2145302/1‑91 (MQ=255)

                                                                    aaCTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACt                        >  2:1344091/1‑91 (MQ=255)

                                                                    aaCTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACt                        <  1:2369696/91‑1 (MQ=255)

                                                                     aCTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACtt                       >  2:2587266/1‑91 (MQ=255)

                                                                     aCTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACtt                       >  2:3837181/1‑91 (MQ=255)

                                                                       ttGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCg                     <  1:373885/91‑1 (MQ=255)

                                                                        tGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGt                    <  1:952773/91‑1 (MQ=255)

                                                                         gTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGtt                   <  1:3306985/91‑1 (MQ=255)

                                                                          tttCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTg                  >  1:1220137/1‑91 (MQ=255)

                                                                            tCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTc                <  1:1126134/91‑1 (MQ=255)

                                                                            tCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTc                <  2:3223976/91‑1 (MQ=255)

                                                                             ccTACACTGTTTTATAAATGAATTTTTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCa               >  1:3101306/1‑91 (MQ=255)

                                                                             ccTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCa               <  1:2927939/91‑1 (MQ=255)

                                                                             ccTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCa               >  1:3800573/1‑91 (MQ=255)

                                                                                acactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTa            >  2:3070573‑M2/11‑91 (MQ=255)

                                                                                   ctgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTg         <  1:3658798‑M2/84‑1 (MQ=255)

                                                                                        ttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTgcagca    >  2:3496877‑M2/3‑91 (MQ=255)

                                                                                        ttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTGCGTTGTCACTATTgcagca    <  2:2794514‑M2/89‑1 (MQ=255)

                                                                                          ataAATGTATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTCATGCAGCAAc  <  2:178023/91‑1 (MQ=255)

                                                                                          ataAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTGCAGCAAc  <  1:8159/91‑1 (MQ=255)

                                                                                          ataAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTGCAGCAAc  <  2:1976065/91‑1 (MQ=255)

                                                                                          ataAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATAAATAGCACCATACTTCGTTGTCACTATTGCAGCAAc  >  2:3901101/1‑91 (MQ=255)

ATAAAATGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTGCAGCAAC  >  USA300TCH1516_ALE/2150601‑2150781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.